epitools / epitools

63%

Build Type

push

github

Committed by web-flow

Commit Message

142 add 3d quality metric (#143)

- Added 3D quality metric computation
- Displays an overlay with the cells fullfilling the criteria of the
percentage of slice a cell should be in.
- It calculates features on only those cells and it can be exported into
a csv file.

Improvements to be made:
- The name should change to 'Cell persistence score' or what we at the
end decide.
- Tests are relatively simple to made. They have not been made.

Improvement to be made in the future:
- Features can be displayed as a table in napari instead of be hidden.

Run Details

16 of 106 new or added lines in 6 files covered. (15.09%)

2 existing lines in 2 files now uncovered.

392 of 619 relevant lines covered (63.33%)

2.53 hits per line