clintval / vartovcf

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main: 98%

LAST BUILD ON BRANCH cv_less_code

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• cv_less_code
• chore/bump-3.1.0
• chore/refresh-build
• chore/release-2.0.0
• chore/release-3.0.0
• chore/release-3.0.1
• chore/release-4.0.0
• chore/release-4.1.0
• chore/release-5.0.0
• chore/release-5.1.0
• chore/release-6.0.0
• chore/release-7.0.0
• copilot/add-cli-flag-to-skip-non-variants
• cv_add_cli_test
• cv_add_first_tests
• cv_add_odds_ratio_logic
• cv_add_reference_to_header
• cv_allow_duplicates
• cv_alphabetical
• cv_backwards
• cv_benchmarks
• cv_better_io
• cv_ci_and_lint
• cv_cleanup_todos
• cv_err_tests
• cv_fai
• cv_faster_hash
• cv_few_more_tests
• cv_format_fields
• cv_gvcf
• cv_max_mean_mismatches
• cv_microsatellite
• cv_mode_support
• cv_more_tests
• cv_move_img
• cv_multi_ci
• cv_no_duplicates
• cv_off_by_one
• cv_proglog
• cv_progress_logger
• cv_revise_tags
• cv_signal_to_noise_float
• cv_simplify_test
• cv_skip_duplicates
• cv_skippables
• cv_small_typo
• cv_stdout
• cv_sv_info
• cv_test_cov
• cv_test_exception
• cv_test_rename
• cv_test_run
• cv_tweak_readme_example
• cv_types_strand_bias
• cv_typo
• cv_windows
• dependabot/cargo/cargo-83c7e119df
• dependabot/github_actions/github-actions-2e39b05bd3
• dependabot/github_actions/github-actions-4a537e7f8d
• dependabot/github_actions/github-actions-d69754c0e8
• dependabot/github_actions/github-actions-fac0e3f76d
• docs/correct-stated-behaviour
• docs/filter-example-usage
• docs/generic-paired-warning
• docs/honest-dp-description
• docs/paired-allele-loss-measured
• docs/reads-figure-ref-base
• docs/rerun-benchmarks
• docs/review-158-followups
• docs/simplify-readme
• docs/tighten-header-descriptions
• feat/context-3mer
• feat/drop-hicnt-filters
• feat/fill-gvcf
• feat/filter-high-mean-mismatches
• feat/filter-low-ad
• feat/filter-low-af
• feat/filter-low-dp-and-hicnt
• feat/filter-low-hicnt-fraction
• feat/filter-low-mean-mapq
• feat/filter-low-qmean
• feat/filter-near-read-end
• feat/filter-repeat-indels
• feat/filter-same-read-position
• feat/filter-strand-bias
• feat/fix-leaky-mnv
• feat/format-af-full-precision
• feat/format-hicnt
• feat/format-mean-mapq
• feat/format-read-position
• feat/format-realigned-frac-of-dp
• feat/format-strand-bias-fisher-p
• feat/format-sv-read-counts
• feat/info-indel-3p-shift
• feat/info-repeat-unit
• feat/no-fisher-needed
• feat/normalize
• feat/paired-detection
• feat/paired-hicnt
• feat/reads-expected-separate
• feat/reads-fold
• feat/reads-mirror-end-clipping
• feat/site-dp
• feat/sort
• feat/strand-depths-adf-adr
• feat/stream-fold
• feat/type-from-written-alleles
• feat/write-index
• fix/ad-honest-ref-depth
• fix/dedup-key-includes-end
• fix/drop-format-vd
• fix/end-only-on-symbolic-alleles
• fix/genotype-every-alt-allele
• fix/leak-model-fold
• fix/mean-mismatches-in-format
• fix/per-sample-fold
• fix/qual-missing-and-qmean
• fix/require-fisher-columns
• fix/svlen-from-vardict-event-length
• main
• perf/compact-dedupe-keys
• refactor/drop-strand-bias-parsing
• refactor/noodles
• refs/tags/0.1.0
• refs/tags/1.3.0
• refs/tags/1.4.0
• refs/tags/1.5.0
• refs/tags/1.5.1
• test/drop-redundant-fixture
• test/signal-race-broken-pipe

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