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biocommons / hgvs
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DEFAULT BRANCH: master
Repo Added 01 Apr 2018 06:34PM UTC
Files 27
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Catch invalid interval for guess-plausible-variant (#605)

e.g., this dummy deletion was failing `ATM:c.8816_8817del` with an HGVSInvalidIntervalError

2162 of 2340 relevant lines covered (92.39%)

2.77 hits per line

Relevant lines Covered
Build:
Build:
2340 RELEVANT LINES 2162 COVERED LINES
2.77 HITS PER LINE
Source Files on master
  • Tree
  • List 27
  • Changed 8
  • Source Changed 3
  • Coverage Changed 8
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
347 master Catch invalid interval for guess-plausible-variant (#605) e.g., this dummy deletion was failing `ATM:c.8816_8817del` with an HGVSInvalidIntervalError push 21 Jul 2020 05:44PM UTC web-flow travis-ci pending completion  
345 master fix bug in is_valid_seq when using NCBI for sequence backend push 24 Jun 2020 01:38AM UTC reece travis-ci pending completion  
339 master Fixes #602: Fixed bug in transcript bounds check that caused n. variants outside bounds to be deemed valid push 23 Jun 2020 06:26PM UTC reece travis-ci pending completion  
338 master fix formatting of example docker command (#601) push 12 Jun 2020 01:01AM UTC web-flow travis-ci pending completion  
335 master Closes #596: add dataprovider method to fetch all alignments for all alignment methods (#597) push 27 Apr 2020 10:41PM UTC web-flow travis-ci pending completion  
332 master fix broken misc/experimental/vcf-add-hgvs push 08 Apr 2020 11:42PM UTC reece travis-ci pending completion  
331 master Merge branch '1.5' push 29 Mar 2020 02:51AM UTC reece travis-ci pending completion  
325 master #437: Fix bug for incorrect c↔n for variation between seq start and cds start push 27 Mar 2020 09:53PM UTC reece travis-ci pending completion  
324 master disable format on save in vs code push 26 Mar 2020 07:01PM UTC reece travis-ci pending completion  
323 master use Invitae examples as bidirectional g↔t tests push 25 Mar 2020 07:15PM UTC reece travis-ci pending completion  
See All Builds (229)
  • Repo on GitHub
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