bihealth / cubi-tk

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LAST BUILD ON BRANCH 148-add-support-for-minimap2sniffles2-to-varfish-upload

branch: 148-add-support-for-minimap2sniffles2-to-varfish-upload

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• 148-add-support-for-minimap2sniffles2-to-varfish-upload
• sodar-cli-dep
• master
• dependabot/pip/requirements/pip-19.2
• feature/pull_generic_sheets
• minor-fixes
• snappy-check
• feature/pull-data-missing-samples
• irods-check
• ceph_archive
• feature/assay_in_snappy_cmds
• dependabot/pip/requirements/pip-21.1
• itransfer_step
• finish_rename
• docs_archive
• bug_fix_pull_raw_data_79
• feature/83-allow-protected-files
• feature/85-fail-on-preexisint-readme
• scRNAseq-template
• 96-move-cookiecutter-templates-to-their-own-repository
• 100-parsing-errors-in-isa-tab-templates-microarray
• 100-parsing-errors-in-isa-tab-template-tumor
• isa-tpl-single-cell
• isatpl-ssc
• 123-extend-kickoff
• isa-singlecell
• dev-check-remote
• 135-sodar-check-remote
• dependabot/pip/requirements/wheel-0.38.1
• 154-cubi-tk-snappy-pull-sheets-needs-a-min-version
• main

`snappy pull-processed-data`: default is to only retrieve latest version of file (#125) (#126)