GavinHuttley / ensembl_tui
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coverage: 86.965% (+6.1%) from 80.827%
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Merge pull request #178 from GavinHuttley/mysql-parquet

MAINT: linting and dev changes

13 of 13 new or added lines in 6 files covered. (100.0%)

2662 of 3061 relevant lines covered (86.97%)

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Builds Branch Commit Type Ran Committer Via Coverage
12820967150 mysql-parquet Merge pull request #178 from GavinHuttley/mysql-parquet MAINT: linting and dev changes push web-flow github
86.97
12799008446 mysql-parquet DEV: updated nox to editable install push GavinHuttley github
86.97
12798815396 mysql-parquet TST: added tests to check exceptions on invalid input to AlignDb push GavinHuttley github
80.83
12798519093 mysql-parquet ENH: rewrite of Alignment storage [CHANGED] ingestion of alignment data now done by functions in new _ingest_align module. Many functions / apps from _maf.py and _align.py moved into it. Deleted all usage of sqlite3 with this change. ... push GavinHuttley github
80.81
12762671250 mysql-parquet MAINT: fixed test names push GavinHuttley github
80.99
12762595148 mysql-parquet API: refactor homology ingestion to using duckdb [NEW] new _ingest_homology.py module has modified functions that were originally in _homology.py. It also includes a new HomologyAggregator class for aggregating homology data from t... push GavinHuttley github
80.99
12755611625 mysql-parquet MAINT: added convenience context manager for temporary directories to utils push GavinHuttley github
81.69
12741022664 mysql-parquet MAINT: renamed module push GavinHuttley github
81.66
12739267984 mysql-parquet STY: address issues identified by ruff push GavinHuttley github
81.63
12738565959 mysql-parquet MAINT: address issues identified by codacy push GavinHuttley github
81.5
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