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EdinburghGenomics / EGCG-Project-Management
71%
master: 80%

Build:
Build:
LAST BUILD BRANCH: delivery_gatk4
DEFAULT BRANCH: master
Repo Added 05 Jun 2017 09:56AM UTC
Files 26
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LAST BUILD ON BRANCH reference_data_refactor
branch: reference_data_refactor
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  • reference_data_refactor
  • 101_existing_run_element
  • 102_check_multiple_flowcell_used
  • 105_update_email
  • 107_disk_space_usage
  • 109_project_report
  • 116_run_deletion
  • 124_get_samples
  • 231_bcl2fastq2.20
  • 85_add_species
  • Confirm_Delivery
  • Fix_project_report
  • Release_0.13
  • Release_v0.11
  • Release_v0.12
  • Update_release_email
  • asana_update
  • bugfix_project_report
  • delete_dmf_data
  • delivery_from_trigger
  • delivery_gatk4
  • detect_space_used
  • disk_space_usage_analysis
  • email_formating
  • final_deletion
  • fix_delivery_confirmation
  • fix_final_data_deletion
  • fix_projectreport_typos
  • gel_delivery
  • gel_delivery_reporting
  • integration_tests
  • mark_sample_run_elements
  • master
  • mwham_develop
  • project_report
  • project_report_address
  • project_report_bugfix
  • project_report_formatting
  • project_report_improv
  • project_report_plots
  • project_report_refactor
  • project_report_refactor2
  • project_report_signature
  • refactor
  • remove_aggregate_usage
  • remove_review_threshold
  • report_runs
  • tape_recall
  • test_project_summary
  • v0.10
  • v0.10.1
  • v0.11.1
  • v0.12.0
  • v0.4
  • v0.5
  • v0.6
  • v0.7
  • v0.8
  • v0.9

pending completion
705

Pull #81

travis-ci

web-flow
Make variation optional in the payload based on if the vcf is present
Pull Request #81: genome downloader fixes

42 of 42 new or added lines in 1 file covered. (100.0%)

1854 of 2602 relevant lines covered (71.25%)

2.14 hits per line

Relevant lines Covered
Build:
Build:
2602 RELEVANT LINES 1854 COVERED LINES
2.14 HITS PER LINE
Source Files on reference_data_refactor
  • List 0
  • Changed 1
  • Source Changed 1
  • Coverage Changed 1
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
705 reference_data_refactor Make variation optional in the payload based on if the vcf is present Pull #81 23 Nov 2018 04:12PM UTC web-flow travis-ci pending completion  
704 reference_data_refactor Make variation optional in the payload based on if the vcf is present push 23 Nov 2018 04:12PM UTC tcezard travis-ci pending completion  
703 reference_data_refactor Allow manual download to not have vcf file Pull #81 23 Nov 2018 04:00PM UTC web-flow travis-ci pending completion  
702 reference_data_refactor Allow manual download to not have vcf file push 23 Nov 2018 04:00PM UTC tcezard travis-ci pending completion  
701 reference_data_refactor Add docstring to genome_param_from_fai_file Pull #81 23 Nov 2018 01:17PM UTC web-flow travis-ci pending completion  
700 reference_data_refactor Add docstring to genome_param_from_fai_file push 23 Nov 2018 01:17PM UTC tcezard travis-ci pending completion  
699 reference_data_refactor Run prepare data before metadata to have access to the fai file parse fai file to provide default to input data fetch ncbi information from the cache or from eutils directly Pull #81 23 Nov 2018 11:27AM UTC web-flow travis-ci pending completion  
698 reference_data_refactor Run prepare data before metadata to have access to the fai file parse fai file to provide default to input data fetch ncbi information from the cache or from eutils directly push 23 Nov 2018 11:22AM UTC tcezard travis-ci pending completion  
691 reference_data_refactor Add some docstrings, specify genome size unit. Pull #78 19 Nov 2018 09:57AM UTC web-flow travis-ci pending completion  
690 reference_data_refactor Add some docstrings, specify genome size unit. push 19 Nov 2018 09:57AM UTC tcezard travis-ci pending completion  
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