DeepRank / deeprank2

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• 479_trailingwhitespace_dbodor
• 170_release_workflow_dbodor
• 251_regenerate_class_diagrams_gcroci2
• 269_unify_torch_imports_dbodor
• 297_increase_modules_docs_gcroci2
• 435_add_tutorials_variants_gcroci2
• 441_Warning_test_dataset.py_joyceljy
• 460_radius_vs_edgedistance_dbodor
• 479_scrapewhitespace_dbodor
• 480_new
• 502_rename_paper_folder_gcroci2
• 506_buildgraph_unification_dbodor
• 510_testing_pre_trained_gcroci2
• 518_fix_cuda_test_gcroci2
• 527_add_dockerfile_gcroci2
• 529_add_docker_testing_action_gcroci2
• 529_fix_dockerfile_add_test_gcroci2
• 534_conda_dssp_gcroci2
• 539_action_for_testing_release_gcroci2
• 540_fix_py_311_gcroci2
• 541_ruff_dbodor
• 541b_ruff_changes_dbodor
• 54_docking_metrics_gcroci2
• 557_release_dev_3.0.0_gcroci2
• 559_conda_migration_gcroci2
• 570_fix_features_transform_gcroci2
• 570_new_patch_release_gcroci2
• 576_add_ipynb_testing_gcroci2
• 585_clarify_usage_queries_gcroci2
• 593_add_opls_ref_gcroci2
• 595_release_302_gcroci2
• 608_add_docs_nn
• 609_inspect_source_code_clarify_gcroci2
• 617_clarify_output_col_gcroci2
• 622_linting_dbodor
• 627_docstring_cleanup_dbodor
• 635_tutorials_dbodor
• 641_ruff_toml_dbodor
• DaniBodor-token
• add_manifest_notice_gcroci2
• change_linter2_gcroci2
• change_linter_gcroci2
• cleaning_installation_gcroci2
• dev
• docker_cleaning_gcroci2
• fix-scipy-1.11.2-error
• fix_inspect_function_trainer_gcroci2
• fix_installation_gcroci2
• fix_readthedocs
• fix_release.yml_gcroci2
• fix_workflows_gcroci2
• gcroci2-patch-2
• gcroci2-patch-3
• hotfix_533_unboundlocalerror_gcroci2
• hotfix_gcroci2
• hotfix_secstructure_dbodor
• hotfix_test_typo_dbodor
• joss_acceptance
• joss_paper_gcroci2
• main
• molstruct_type_hints
• perf_table_gcroci2
• release_2.1.1_gcroci2
• release_3.0.3
• release_3.0.4_gcroci2
• release_3.0.5
• release_3.0.5_gcroci2
• release_3.1.0_gcroci2
• remove_conda_deps
• rename_repository_gcroci2
• set_deps_versions
• simplify_lint_action_dbodor
• style_patches_dbodor
• typo_dbodor

Merge 6462b8cb3 into cad082404