ColCarroll / pymc3

85%

master: 48%

LAST BUILD ON BRANCH 3.1

branch: 3.1

CHANGE BRANCH

x

Reset

• 3.1
• AustinRochford-ENH-development-container
• add_benchmarks
• add_mkl
• add_size_everywhere
• add_xhmc
• arviz-req
• arviz_plot
• benchmark_ess
• binder
• bump_test_versions
• bump_theano
• cache_conda
• change_nuts_sample
• circleci
• compact-traceplot
• consistent_data_loading
• consistent_transform_names
• dangerous_defaults
• dockerfile
• find_MAP
• fix-graphviz
• fix-links
• fix_alabaster_navbar
• fix_bounded
• fix_deterministics
• fix_examples
• fix_forestplot
• fix_generator_tests
• fix_gp_latent
• fix_hmc
• fix_lkj_test
• fix_more_latex
• fix_reqs
• fix_save_ndarray
• fix_travis_build
• fix_typo
• fix_wildcards
• focus-benchmarks
• global_env
• idempotent_scripts
• integrator-docs
• inverse-gamma-bug
• jokes
• latex_model
• lint_more
• lint_unused
• make_scripts_executable
• master
• matmul
• metrop_accept
• metropolis
• metropolis_accept
• model_graph
• more_data_loading
• more_shape
• more_transform_names
• multinomial_fix
• new-docs
• new-unpin-theano
• numpy-warnings
• numpy_docs_hmc
• optional_mpl
• parallel_seed
• parameterized
• pass_extent
• pin-theano
• pin_theano
• plot_dir
• prettier-latex
• prior_potential
• pylint_errors
• pyup-initial-update
• raise-ok-signature
• refactor_hmc
• refactor_nuts
• regression_test
• remove-pmf
• remove_py_2
• remove_unused_arg
• requirements
• rerun-notebooks
• rerun_posterior_predictive
• rm-numdifftools
• rm_hierarchical
• rm_run_notebooks
• rm_verbose
• run_lint_first
• run_notebooks
• safe-scipy
• sample_generative
• sample_posterior
• sample_ppc_random_seed
• save_ndarray
• scientific_notation
• seed_diagnostics
• single_smc_backend
• smc
• smc_text
• speed_up_nuts
• stable-travis-sphinx
• test_build
• test_docs
• test_smc
• text_backend_stats
• tidy_hmc
• tidy_plots
• tidy_smc
• travis-sphinx-clean
• travis_lint
• unfix-sidebar
• unpin
• unpin-theano
• update-docs
• update-ppc
• update_create_testenv
• update_readme
• update_setup
• use_png_logo
• use_pytest
• use_rtd_theme
• v3.0
• v3.1
• wrong_import_order

Build # 97

Build Type

push

travis-ci

Committed by ColCarroll

Commit Message

ENH User model (#1525)

* Started to write Base class for pymc3.models

* mode `add_var` to public api

* Added some docstrings

* Added some docstrings

* added getitem and fixed a typo

* added assertion check

* added resolve var method

* decided not to add resolve method

* Added linear component

* Docs fix

* patsy's intercept is inited properly now

* refactored code

* updated docs

* added possibility to init coefficients with random variables

* added glm

* refactored api, fixed formula init

* refactored linear model, extended acceptable types

* moved useful matrix and labels creation to utils file

* code style

* removed redundant evaluation of shape

* refactored resolver for constructing matrix and labels

* changed error message

* changed signature of init

* simplified utils any_to_tensor_and_labels code

* tests for `any_to_tensor_and_labels`

* added docstring for `any_to_tensor_and_labels` util

* forgot to document return type in `any_to_tensor_and_labels`

* refactored code for dict

* dict tests fix(do not check labels there)

* added access to random vars of model

* added a shortcut for all variables so there is a unified way to get them

* added default priors for linear model

* update docs for linear

* refactored UserModel api, made it more similar to pm.Model class

* Lots of refactoring, tests for base class, more plain api design

* deleted unused module variable

* fixed some typos in docstring

* Refactored pm.Model class, now it is ready for inheritance

* Added documentation for Model class

* Small typo in docstring

* nested contains for treedict (needed for add_random_variable)

* More accurate duplicate implementation of treedict/treelist

* refactored treedict/treelist

* changed `__imul__` of treelist

* added `root` property and `isroot` indicator for base model

* protect `parent` and `model` attributes from violati... (continued)

Run Details

7086 of 8337 relevant lines covered (84.99%)

2.78 hits per line