Clinical-Genomics / mutacc
87%
master: 0%

LAST BUILD BRANCH: fix_picard_version
DEFAULT BRANCH: master
Repo Added
Files 41
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst

LAST BUILD ON BRANCH develop
branch: develop
CHANGE BRANCH
x

168

Pull #58

travis-ci

web-flow 
Allow user to make options based queries on some parameters such as v… (#57)

* Allow user to make options based queries on some parameters such as variant type, and analysis type

* Remove unecessary schema definitions

* Add query options to view commands
Pull Request #58: Develop

251 of 251 new or added lines in 19 files covered. (100.0%)

1043 of 1196 relevant lines covered (87.21%)

0.87 hits per line

Relevant lines Covered
1196 RELEVANT LINES 1043 COVERED LINES
0.87 HITS PER LINE
Source Files on develop
Detailed source file information is not available for this build.

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
168 develop Allow user to make options based queries on some parameters such as v… (#57) * Allow user to make options based queries on some parameters such as variant type, and analysis type * Remove unecessary schema definitions * Add query options to... Pull #58 web-flow travis-ci pending completion  
167 develop Allow user to make options based queries on some parameters such as v… (#57) * Allow user to make options based queries on some parameters such as variant type, and analysis type * Remove unecessary schema definitions * Add query options to... push web-flow travis-ci pending completion  
160 develop feat(cli) add command to version a dataset * Add command to version a dataset * fix * Update changelog * Fix test to only use mocked mongo connections * Refactoring and added tests push web-flow travis-ci pending completion  
150 develop fix TYPE vs. SVTYPE ID in vcf files push adrosenbaum travis-ci pending completion  
149 develop Demo (#53) feat[CLI]: Added a user demo * Creating demo A demo, explaining the usage of mutacc is now availible. * Fix demo readme in docs/demo.md * Add igv snapshot * Make path to demo files relative to mutacc package + refactor c... push web-flow travis-ci pending completion  
145 develop Code owners (#55) * Add codeowners and PR template * update changelog push web-flow travis-ci pending completion  
136 develop Allow for updating existing cases, and version fastq-files generated … (#51) feature: Option to replace previous uploaded cases The user can chose to replace a previous uploaded cases with the '--replace' flag The fastq-files created for the ... push web-flow travis-ci pending completion  
131 develop Change from using 'pickle' modlule to serialize data for later use (#50) feat: MutAcc dumps files as son for later import push web-flow travis-ci pending completion  
126 develop Merge pull request #49 from Clinical-Genomics/init-gitflow Initiate gitflow push web-flow travis-ci pending completion  
125 develop Merge pull request #48 from Clinical-Genomics/yaml-requirement fix yaml requirements push web-flow travis-ci pending completion  
See All Builds (240)