Clinical-Genomics / mutacc
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Pull #58

travis-ci

web-flow 
Allow user to make options based queries on some parameters such as v… (#57)

* Allow user to make options based queries on some parameters such as variant type, and analysis type

* Remove unecessary schema definitions

* Add query options to view commands
Pull Request #58: Develop

251 of 251 new or added lines in 19 files covered. (100.0%)

1043 of 1196 relevant lines covered (87.21%)

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168 develop Allow user to make options based queries on some parameters such as v… (#57) * Allow user to make options based queries on some parameters such as variant type, and analysis type * Remove unecessary schema definitions * Add query options to... Pull #58 web-flow travis-ci pending completion  
167 develop Allow user to make options based queries on some parameters such as v… (#57) * Allow user to make options based queries on some parameters such as variant type, and analysis type * Remove unecessary schema definitions * Add query options to... push web-flow travis-ci pending completion  
160 develop feat(cli) add command to version a dataset * Add command to version a dataset * fix * Update changelog * Fix test to only use mocked mongo connections * Refactoring and added tests push web-flow travis-ci pending completion  
150 develop fix TYPE vs. SVTYPE ID in vcf files push adrosenbaum travis-ci pending completion  
149 develop Demo (#53) feat[CLI]: Added a user demo * Creating demo A demo, explaining the usage of mutacc is now availible. * Fix demo readme in docs/demo.md * Add igv snapshot * Make path to demo files relative to mutacc package + refactor c... push web-flow travis-ci pending completion  
145 develop Code owners (#55) * Add codeowners and PR template * update changelog push web-flow travis-ci pending completion  
136 develop Allow for updating existing cases, and version fastq-files generated … (#51) feature: Option to replace previous uploaded cases The user can chose to replace a previous uploaded cases with the '--replace' flag The fastq-files created for the ... push web-flow travis-ci pending completion  
131 develop Change from using 'pickle' modlule to serialize data for later use (#50) feat: MutAcc dumps files as son for later import push web-flow travis-ci pending completion  
126 develop Merge pull request #49 from Clinical-Genomics/init-gitflow Initiate gitflow push web-flow travis-ci pending completion  
125 develop Merge pull request #48 from Clinical-Genomics/yaml-requirement fix yaml requirements push web-flow travis-ci pending completion  
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