Clinical-Genomics / demultiplexing

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master: 53%

LAST BUILD ON BRANCH fix/duplicate-reads

branch: fix/duplicate-reads

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• fix/duplicate-reads
• Add-Y-to-base-mask
• Add-depoy-doc
• add/2500-demux-lane-option
• bcl2fastq_docker
• control_and_reagent_version_fix
• demux-on-hasta
• feat-hiseq-with-varying-lane-count
• feat/2500-demux-on-hasta
• feat/demux-on-hasta
• feat/hiseq-samplesheet-validation
• feat/indexreport
• feat/reverse-complement-index
• fix-2500-migration-chmod
• fix-2500-samplesheet
• fix-bind-novaseq-demux
• fix-carriagereturnsyncnipt
• fix-chmod2500scripts
• fix-fluffy-lims-samplenames-in-sheet
• fix-hiseqx-basemask-read-cycles
• fix-novaseq-sif-bind-path
• fix-rev-comp-versions-check
• fix-versions-check-revcomp
• fix/bugged-out-pyproject-version
• fix/demux-emails-rm-samplesheet
• fix/emergency-fix-index1
• fix/lane-count-novaseq
• fix/novaseq-demux-start
• fix/novaseq-hasta-delivery-fix
• fix/pass-environment-variable
• fix/pipefail-crashes
• fix/poetry.file
• fix/remove-end-option
• fix/reverse-complement-improvements
• fix/updated-conda-binary
• fixing-demux-config-file
• fixing-env-variable
• github_actions
• hiseqx-never-link-pooled-undetermined
• master
• poetry
• remove-cg-stats-dependency
• revert-158-hiseqx-never-link-pooled-undetermined
• rm_travis
• single_index_novaseq
• update_codeowner

Merge 87d83648b into b632f482e