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4dn-dcic / foursight
91%
master: 89%

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LAST BUILD BRANCH: delete_problematic_running_runs
DEFAULT BRANCH: master
Repo Added 06 Nov 2017 05:01PM UTC
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LAST BUILD ON BRANCH fastq_tar
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  • fastq_tar
  • CGAP_V16
  • Data_Use_Guideline_Check
  • FF-1006
  • FF-1008
  • FF-1009
  • FF-1011
  • FF-1013
  • FF-1021
  • FF-1022
  • FF-1024
  • FF-1026
  • FF-1026_2
  • FF-1030
  • FF-1030_2
  • FF-1033
  • FF-1035
  • FF-1036
  • FF-1042
  • FF-1043
  • FF-1047
  • FF-1047_2
  • FF-1060
  • FF-1061
  • FF-1079
  • FF-1084
  • FF-1085
  • FF-1086-from-tibanna
  • FF-1087
  • FF-1090
  • FF-984
  • FF-997
  • FF-997_2
  • FF-998
  • MARGI-static-header
  • MARGI_wfr
  • Pipeline_spot_management
  • V17-updates
  • V17-updates-2
  • V17-updates-3
  • action_fix
  • action_history
  • add-description
  • add-mount-for-cgap
  • add-new-nz-files
  • add-zebrafish-mboI
  • add_bed_2_higlass_check
  • add_cram_wf
  • add_email_option_pending_lab
  • add_mpileup_cgap_step1
  • add_nz
  • add_pipelines
  • add_pipelines_2
  • add_timeouts
  • add_vistrack_2_hg_chk
  • add_wait_starting_runs
  • allow_action_fix
  • assay_shortnames
  • audits
  • auth_hotfix
  • auth_test_change
  • autodoc
  • automating_checks
  • av/improve-higlass-registration
  • badge_messages_array
  • badges2
  • badges_fxn
  • bam_snap-update
  • bamqc_benchmarking_fix
  • bamqc_metrics_summary
  • bamqc_timeout_fix
  • bed2bedb_check_fixes
  • bed2beddb_fix
  • bedtobeddb_v3
  • bedtomultivec
  • berg_cgap_autodeploy
  • berg_cgap_deploy_fix
  • bg2bw_v5
  • bgtobw
  • biof_eng_const_fix
  • biofeat_org_chk
  • biorxiv2pub
  • biosample_badges
  • body_size_hotfix
  • bs_badge_fix
  • bs_badge_msglist
  • bs_badges_envs
  • build_check_fix
  • build_indices_fix
  • c4_161
  • c4_314
  • c4_58
  • cache_removal
  • cagp_obs_sugg
  • case_fix
  • cert
  • cgap
  • cgap-pipeline-updates-8
  • cgap-v12
  • cgapV16_updates
  • cgap_PartI_WES
  • cgap_add_error_report
  • cgap_checks_updates
  • cgap_fastqc_updates
  • cgap_fix
  • cgap_md5_fix
  • cgap_multi_sample_analysis
  • cgap_pipeline
  • cgap_pipeline_2
  • cgap_pipeline_updates
  • cgap_pipeline_updates_2
  • cgap_pipeline_updates_3
  • cgap_pipeline_updates_5
  • cgap_pipeline_updates_6
  • cgap_spot_off
  • cgap_suggested_enum_fix
  • cgap_v17
  • change_in_item_counts_v2
  • check-suggested-enum
  • check_dbxrefs
  • check_duplicate_opfs
  • check_fastq_ids
  • check_fixes
  • check_hic_summary
  • check_idx_higlass
  • check_latest_wf_version
  • check_opf_status_edit
  • check_problematic_runs
  • check_queries_fixes
  • chk4track_meta
  • chkbiorxiv4pub
  • clean_old_s3
  • cloudwatch_rules
  • connection_refactor
  • continious_staggering
  • cypress_check_automation
  • cypress_check_bug_fixes
  • cypress_check_bug_fixes2
  • daily_cron_fix
  • data_release_grammar
  • data_release_hack
  • data_usage_status_edit
  • dcicutils_0.4.0
  • dedup
  • dedup_round_2
  • dedup_test
  • default_values
  • del_f_w_live_wfr
  • delete_env
  • delete_problematic_running_runs
  • deploy_fix
  • deploy_fixes
  • deploys
  • disable-converters
  • disable_all_pipeline_runs
  • docs
  • docs_build
  • don't-check-qc-on-step4
  • dont_ingest_tag_cgapwolf
  • dont_skip_small_sets
  • doppelganger-add_user_created_items
  • download_tracking
  • downstream
  • dt_processing_3_12_19
  • ec2_wfr_info
  • env_cgap
  • enzyme_fix
  • es6
  • es_check
  • eset_chg_track
  • exp_type_rd2
  • exptype_check_fix
  • fastq_formatqc
  • fastqc_new_versions
  • fastqc_on_processed_files
  • fetch_wfr_related_items
  • ff_metrics
  • file_processed
  • files_not_registered_with_higlass
  • filesize
  • fix_auto_filesize
  • fix_badge_redundancy
  • fix_cgap_fastqc
  • fix_higlass_chks
  • fix_higlassupdate_expsets_otherprocessedfiles_error
  • fix_long_run_name_error
  • frag_size_edit
  • fs_keys
  • generate_view_configs
  • good_badges
  • google_utils_fix
  • grouped_with_check
  • header_checks
  • hela_check
  • help_url_check
  • hic_pipeline_fix
  • higlass-registration-local
  • higlass_check_update
  • higlass_checks
  • higlass_file_act
  • higlass_mins_leeway
  • higlass_opf_fix
  • higlass_patch_fix
  • higlass_processed_file_combine
  • higlass_processed_fix
  • higlass_quickfix
  • higlass_reg_fixes
  • higlass_schema_changes
  • higlass_uid_fix
  • history_fix
  • hot-pipeline-fix
  • ignored_enum
  • in_situ_chia_pet
  • indexing_progress
  • indexing_records_fix
  • ingestion_trigger
  • insulation_scores_and_boundaries_pipeline
  • insulator_score_pipeline
  • investigate_check_delay
  • json
  • json_fix
  • kill_ec2_action
  • kmp_C4-95_env_utils_leftover_issues
  • kmp_C4-95_use_utils_0-10-0
  • lab_opfs
  • limit_all_hotfix
  • login_redirect
  • madqc
  • margi_bams
  • margi_fix_wfr_version
  • margi_qc_metric_summary_and_enzyme_check
  • margi_quality_metric_summary
  • margi_v4
  • master
  • md5_fastq_auto
  • micro_c_official
  • migrate_to_pytest
  • misc_changes
  • misc_fixes
  • mismatch_info
  • mod_biorxiv_chk
  • mod_chk_timing
  • monthly_rds
  • more_higlass_checks
  • new_chalice
  • new_enzyme_patterns
  • new_header_checks
  • new_utils
  • no_filesize
  • no_pr_deploy
  • ont_fix
  • ontology_404
  • ontology_updates
  • opf_check_expand
  • opf_status_check
  • optimize
  • partIII
  • peddy_qc
  • pending_users_check
  • performance_check_tweak
  • pipeline-updates
  • pipelines-3
  • placeholder_config
  • pmid_geo_links
  • poetry
  • prod
  • production
  • purge_fix
  • purge_search_res
  • qc_metrics_list_fixes
  • qc_update
  • qctable
  • qctable2
  • qctable3
  • qctable4
  • query_string
  • queue_action_envs
  • queue_action_higlass
  • queue_dedup_2
  • quick_fixes
  • re_check
  • re_checker_update
  • re_new_enzymes
  • redirect_fix
  • register-higlass
  • register_higlass_v2
  • rel_upd_chk
  • release_updates_fix
  • release_updates_notes
  • release_updates_project
  • rename_checks
  • replicate_audit
  • rm_cgap
  • rna_seq_pipeline
  • rna_strandedness_fixes
  • rna_strandness
  • rnaqc
  • run_action_kwarg
  • say_my_name
  • schedule_fix
  • sci_HiC-&-DNase_HiC
  • security_fix
  • soo
  • staging_fix
  • status_mismatch_chk
  • subprocess
  • summary_in_history
  • sync_analytics
  • testin
  • time_dedup
  • tweak_sched
  • tweak_status_for_higlass_uuid_check
  • up_timeout
  • upd_biorxiv_chk
  • upd_bioxriv_to_pub
  • upd_chks_w_get_es
  • upd_opf_s_mis
  • upd_pending_lab_action
  • update-brief-info-cgap-runs
  • update-complete-tags
  • update-indexing-status-on-capture-hic
  • update_auth
  • update_cgap_config
  • update_fastqc_version
  • update_url_check
  • updates
  • updates_cgap_pipeline
  • url_escapes
  • url_exceptions
  • url_readtimeout
  • url_timeout
  • use_ff_keys
  • use_query_search
  • utils_026
  • v11
  • valid_gene_chk
  • validation_errors_search
  • various_small_features
  • warning_badges
  • webdev_check
  • wf_version_check_fix
  • wfr_indexing_status_check
  • wipe_indices
  • wolf_er
  • workflow_audit
  • wrangler_meeting
  • zebra_fish_ref_files
  • zfish_maxsize

pending completion
3022

Pull #328

travis-ci

web-flow
Merge ea9dec092 into 0eeea33d8
Pull Request #328: fastq pipelines only on fastq format

501 of 577 branches covered (86.83%)

Branch coverage included in aggregate %.

1285 of 1389 relevant lines covered (92.51%)

0.93 hits per line

Relevant lines Covered
Build:
Build:
1389 RELEVANT LINES 1285 COVERED LINES
0.93 HITS PER LINE
Source Files on fastq_tar
  • Tree
  • List 9
  • Changed 1
  • Source Changed 0
  • Coverage Changed 1
Coverage ∆ File Lines Relevant Covered Missed Hits/Line Branch Hits Branch Misses

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
3022 fastq_tar Merge ea9dec092 into 0eeea33d8 Pull #328 02 Sep 2020 11:46PM UTC web-flow travis-ci pending completion  
3021 fastq_tar Update pyproject.toml push 02 Sep 2020 11:36PM UTC andreacosolo travis-ci pending completion  
3020 fastq_tar Merge 8c8562d68 into 0eeea33d8 Pull #328 02 Sep 2020 11:06PM UTC web-flow travis-ci pending completion  
3019 fastq_tar Merge branch 'master' into fastq_tar push 02 Sep 2020 10:58PM UTC KorayKirli travis-ci pending completion  
3005 fastq_tar Merge b08ba735c into a814555b7 Pull #328 02 Sep 2020 04:28PM UTC web-flow travis-ci pending completion  
3004 fastq_tar fastq pipelines only on fastq format Fix checks that are meant to run only on fastq files to make sure that the file format of the file is indeed fastq. This is necessary since we allowed also tar format for FileFastq items push 02 Sep 2020 04:20PM UTC andreacosolo travis-ci pending completion  
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