29339875990

Committed 14 Jul 2026 02:13PM UTC coverage: 28.495% (-0.8%) from 29.306%

Build # 29339875990

Build Type

Pull #557

github

Committed by

web-flow

Commit Message

Merge 8ed1c6062 into e89f67f90

Pull Request Pull Request #557: feat: chat with local Claude Code via MCP endpoint

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1986 of 7652 branches covered (25.95%)

Branch coverage included in aggregate %.

3892 of 12976 relevant lines covered (29.99%)

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65.07

src/main/java/com/knowledgepixels/nanodash/NanodashPreferences.java

package com.knowledgepixels.nanodash;

import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import tools.jackson.core.JacksonException;
import tools.jackson.databind.ObjectMapper;
import tools.jackson.dataformat.yaml.YAMLMapper;

import java.io.File;
import java.io.Serializable;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;

/**
 * Class to manage Nanodash preferences.
 */
public class NanodashPreferences implements Serializable {

    private static NanodashPreferences obj;
    private static final Logger logger = LoggerFactory.getLogger(NanodashPreferences.class);

    /**
     * Get the singleton instance of NanodashPreferences.
     *
     * @return the NanodashPreferences instance
     */
    public static NanodashPreferences get() {
        if (obj == null) {
            File prefFile = new File(System.getProperty("user.home") + DEFAULT_SETTING_PATH);
            if (!prefFile.exists()) {
                return new NanodashPreferences();
            }
            ObjectMapper mapper = new YAMLMapper();
            try {
                obj = mapper.readValue(prefFile, NanodashPreferences.class);
            } catch (JacksonException ex) {
                obj = new NanodashPreferences();
                logger.error("Could not read preferences file at '{}' using defaults", DEFAULT_SETTING_PATH, ex);
            }
        }
        return obj;
    }

    private List<String> nanopubActions = new ArrayList<>();
    private boolean readOnlyMode = false;
    private String websiteUrl = "http://localhost:37373/";
    private boolean orcidLoginMode = false;
    private String orcidClientId;
    private String orcidClientSecret;
    private String settingUri;
    private String umamiScriptUrl;
    private String umamiWebsiteId;
    private String homeResource = "https://w3id.org/spaces/knowledgepixels/nanodash/r/home";
    private boolean claudeChatEnabled = false;
    private String claudeChatBinary = "claude";
    private String claudeChatModel;
    public static final String DEFAULT_SETTING_PATH = "/.nanopub/nanodash-preferences.yml";

    /**
     * Return the list of nanopub actions.
     *
     * @return list of nanopub actions
     */
    public List<String> getNanopubActions() {
        String s = System.getenv("NANODASH_NANOPUB_ACTIONS");
        if (s != null && !s.isBlank()) {
            return Arrays.asList(s.split(" "));
        }
        return nanopubActions;
    }

    /**
     * Set the list of nanopub actions.
     *
     * @param nanopubActions the list of nanopub actions
     */
    public void setNanopubActions(List<String> nanopubActions) {
        this.nanopubActions = nanopubActions;
    }

    /**
     * Check if the application is in read-only mode.
     *
     * @return true if in read-only mode, false otherwise
     */
    public boolean isReadOnlyMode() {
        if ("true".equals(System.getenv("NANODASH_READ_ONLY_MODE"))) {
            logger.debug("Found environment variable NANODASH_READ_ONLY_MODE with value: {}", true);
            return true;
        }
        logger.debug("Environment variable NANODASH_READ_ONLY_MODE not set, using default: {}", readOnlyMode);
        return readOnlyMode;
    }

    /**
     * Set the read-only mode.
     *
     * @param readOnlyMode true to enable read-only mode, false to disable
     */
    public void setReadOnlyMode(boolean readOnlyMode) {
        this.readOnlyMode = readOnlyMode;
    }

    /**
     * Get the website URL.
     *
     * @return the website URL
     */
    public String getWebsiteUrl() {
        String s = System.getenv("NANODASH_WEBSITE_URL");
        if (s != null && !s.isBlank()) {
            logger.debug("Found environment variable NANODASH_WEBSITE_URL with value: {}", s);
            return s;
        }
        logger.debug("Environment variable NANODASH_WEBSITE_URL not set, using default: {}", websiteUrl);
        return websiteUrl;
    }

    /**
     * Set the website URL.
     *
     * @param websiteUrl the website URL to set
     */
    public void setWebsiteUrl(String websiteUrl) {
        this.websiteUrl = websiteUrl;
    }

    /**
     * Check if the application is in ORCID login mode.
     *
     * @return true if in ORCID login mode, false otherwise
     */
    public boolean isOrcidLoginMode() {
        if ("true".equals(System.getenv("NANODASH_ORCID_LOGIN_MODE"))) {
            logger.debug("Found environment variable NANODASH_ORCID_LOGIN_MODE with value: {}", true);
            return true;
        }
        logger.debug("Environment variable NANODASH_ORCID_LOGIN_MODE not set, using default: {}", orcidLoginMode);
        return orcidLoginMode;
    }

    /**
     * Set the ORCID login mode.
     *
     * @param orcidLoginMode true to enable ORCID login mode, false to disable
     */
    public void setOrcidLoginMode(boolean orcidLoginMode) {
        this.orcidLoginMode = orcidLoginMode;
    }

    /**
     * Get the ORCID client ID.
     *
     * @return the ORCID client ID
     */
    public String getOrcidClientId() {
        String s = System.getenv("NANOPUB_ORCID_CLIENT_ID");
        if (s != null && !s.isBlank()) {
            logger.debug("Found environment variable NANOPUB_ORCID_CLIENT_ID with value: {}", s);
            return s;
        }
        logger.debug("Environment variable NANOPUB_ORCID_CLIENT_ID not set, using default: {}", orcidClientId);
        return orcidClientId;
    }

    /**
     * Set the ORCID client ID.
     *
     * @param orcidClientId the ORCID client ID to set
     */
    public void setOrcidClientId(String orcidClientId) {
        this.orcidClientId = orcidClientId;
    }

    /**
     * Get the ORCID client secret.
     * .
     *
     * @return the ORCID client secret
     */
    public String getOrcidClientSecret() {
        String s = System.getenv("NANOPUB_ORCID_CLIENT_SECRET");
        if (s != null && !s.isBlank()) {
            logger.debug("Found environment variable NANOPUB_ORCID_CLIENT_SECRET");
            return s;
        }
        logger.debug("Environment variable NANOPUB_ORCID_CLIENT_SECRET not set, using default");
        return orcidClientSecret;
    }

    /**
     * Set the ORCID client secret.
     *
     * @param orcidClientSecret the ORCID client secret to set
     */
    public void setOrcidClientSecret(String orcidClientSecret) {
        this.orcidClientSecret = orcidClientSecret;
    }

    /**
     * Get the setting URI.
     *
     * @return the setting URI
     */
    public String getSettingUri() {
        return settingUri;
    }

    /**
     * Set the setting URI.
     *
     * @param settingUri the setting URI to set
     */
    public void setSettingUri(String settingUri) {
        this.settingUri = settingUri;
    }

    /**
     * Get the Umami analytics script URL.
     *
     * @return the Umami script URL, or null if not configured
     */
    public String getUmamiScriptUrl() {
        String s = System.getenv("NANODASH_UMAMI_SCRIPT_URL");
        if (s != null && !s.isBlank()) return s;
        return umamiScriptUrl;
    }

    /**
     * Set the Umami analytics script URL.
     *
     * @param umamiScriptUrl the Umami script URL to set
     */
    public void setUmamiScriptUrl(String umamiScriptUrl) {
        this.umamiScriptUrl = umamiScriptUrl;
    }

    /**
     * Get the Umami analytics website ID.
     *
     * @return the Umami website ID, or null if not configured
     */
    public String getUmamiWebsiteId() {
        String s = System.getenv("NANODASH_UMAMI_WEBSITE_ID");
        if (s != null && !s.isBlank()) return s;
        return umamiWebsiteId;
    }

    /**
     * Set the Umami analytics website ID.
     *
     * @param umamiWebsiteId the Umami website ID to set
     */
    public void setUmamiWebsiteId(String umamiWebsiteId) {
        this.umamiWebsiteId = umamiWebsiteId;
    }

    /**
     * Check whether the local Claude Code chat feature is enabled.
     *
     * Intended for locally running single-user instances only; see
     * docs/claude-code-chat.md.
     *
     * @return true if the Claude chat feature is enabled
     */
    public boolean isClaudeChatEnabled() {
        if ("true".equals(System.getenv("NANODASH_CLAUDE_CHAT_ENABLED"))) {
            return true;
        }
        return claudeChatEnabled;
    }

    /**
     * Set whether the local Claude Code chat feature is enabled.
     *
     * @param claudeChatEnabled true to enable
     */
    public void setClaudeChatEnabled(boolean claudeChatEnabled) {
        this.claudeChatEnabled = claudeChatEnabled;
    }

    /**
     * Get the command to run the Claude Code CLI.
     *
     * @return the binary name or path (default "claude")
     */
    public String getClaudeChatBinary() {
        String s = System.getenv("NANODASH_CLAUDE_CHAT_BINARY");
        if (s != null && !s.isBlank()) return s;
        return claudeChatBinary;
    }

    /**
     * Set the command to run the Claude Code CLI.
     *
     * @param claudeChatBinary the binary name or path
     */
    public void setClaudeChatBinary(String claudeChatBinary) {
        this.claudeChatBinary = claudeChatBinary;
    }

    /**
     * Get the model override for Claude Code chat sessions.
     *
     * @return the model name, or null to use the CLI's default
     */
    public String getClaudeChatModel() {
        String s = System.getenv("NANODASH_CLAUDE_CHAT_MODEL");
        if (s != null && !s.isBlank()) return s;
        return claudeChatModel;
    }

    /**
     * Set the model override for Claude Code chat sessions.
     *
     * @param claudeChatModel the model name
     */
    public void setClaudeChatModel(String claudeChatModel) {
        this.claudeChatModel = claudeChatModel;
    }

    public String getHomeResource() {
        String s = System.getenv("NANODASH_HOME_RESOURCE");
        if (s != null && !s.isBlank()) {
            logger.debug("Found environment variable NANODASH_HOME_RESOURCE with value: {}", s);
            return s;
        }
        logger.debug("Environment variable NANODASH_HOME_RESOURCE not set, using default: {}", homeResource);
        return homeResource;
    }

    public void setHomeResource(String homeResource) {
        this.homeResource = homeResource;
    }

}

1	package com.knowledgepixels.nanodash;
2
3	import org.slf4j.Logger;
4	import org.slf4j.LoggerFactory;
5	import tools.jackson.core.JacksonException;
6	import tools.jackson.databind.ObjectMapper;
7	import tools.jackson.dataformat.yaml.YAMLMapper;
8
9	import java.io.File;
10	import java.io.Serializable;
11	import java.util.ArrayList;
12	import java.util.Arrays;
13	import java.util.List;
14
15	/**
16	* Class to manage Nanodash preferences.
17	*/
18	public class NanodashPreferences implements Serializable {	6✔
19
20	private static NanodashPreferences obj;
21	private static final Logger logger = LoggerFactory.getLogger(NanodashPreferences.class);	12✔
22
23	/**
24	* Get the singleton instance of NanodashPreferences.
25	*
26	* @return the NanodashPreferences instance
27	*/
28	public static NanodashPreferences get() {
29	if (obj == null) {	6✔
30	File prefFile = new File(System.getProperty("user.home") + DEFAULT_SETTING_PATH);	21✔
31	if (!prefFile.exists()) {	9✔
32	return new NanodashPreferences();	12✔
33	}
34	ObjectMapper mapper = new YAMLMapper();	12✔
35	try {
36	obj = mapper.readValue(prefFile, NanodashPreferences.class);	18✔
37	} catch (JacksonException ex) {	3✔
38	obj = new NanodashPreferences();	12✔
39	logger.error("Could not read preferences file at '{}' using defaults", DEFAULT_SETTING_PATH, ex);	15✔
40	}	3✔
41	}
42	return obj;	6✔
43	}
44
45	private List<String> nanopubActions = new ArrayList<>();	15✔
46	private boolean readOnlyMode = false;	9✔
47	private String websiteUrl = "http://localhost:37373/";	9✔
48	private boolean orcidLoginMode = false;	9✔
49	private String orcidClientId;
50	private String orcidClientSecret;
51	private String settingUri;
52	private String umamiScriptUrl;
53	private String umamiWebsiteId;
54	private String homeResource = "https://w3id.org/spaces/knowledgepixels/nanodash/r/home";	9✔
55	private boolean claudeChatEnabled = false;	9✔
56	private String claudeChatBinary = "claude";	12✔
57	private String claudeChatModel;
58	public static final String DEFAULT_SETTING_PATH = "/.nanopub/nanodash-preferences.yml";
59
60	/**
61	* Return the list of nanopub actions.
62	*
63	* @return list of nanopub actions
64	*/
65	public List<String> getNanopubActions() {
66	String s = System.getenv("NANODASH_NANOPUB_ACTIONS");	9✔
67	if (s != null && !s.isBlank()) {	15✔
68	return Arrays.asList(s.split(" "));	15✔
69	}
70	return nanopubActions;	9✔
71	}
72
73	/**
74	* Set the list of nanopub actions.
75	*
76	* @param nanopubActions the list of nanopub actions
77	*/
78	public void setNanopubActions(List<String> nanopubActions) {
79	this.nanopubActions = nanopubActions;	9✔
80	}	3✔
81
82	/**
83	* Check if the application is in read-only mode.
84	*
85	* @return true if in read-only mode, false otherwise
86	*/
87	public boolean isReadOnlyMode() {
88	if ("true".equals(System.getenv("NANODASH_READ_ONLY_MODE"))) {	15✔
89	logger.debug("Found environment variable NANODASH_READ_ONLY_MODE with value: {}", true);	15✔
90	return true;	6✔
91	}
92	logger.debug("Environment variable NANODASH_READ_ONLY_MODE not set, using default: {}", readOnlyMode);	18✔
93	return readOnlyMode;	9✔
94	}
95
96	/**
97	* Set the read-only mode.
98	*
99	* @param readOnlyMode true to enable read-only mode, false to disable
100	*/
101	public void setReadOnlyMode(boolean readOnlyMode) {
102	this.readOnlyMode = readOnlyMode;	9✔
103	}	3✔
104
105	/**
106	* Get the website URL.
107	*
108	* @return the website URL
109	*/
110	public String getWebsiteUrl() {
111	String s = System.getenv("NANODASH_WEBSITE_URL");	9✔
112	if (s != null && !s.isBlank()) {	15✔
113	logger.debug("Found environment variable NANODASH_WEBSITE_URL with value: {}", s);	12✔
114	return s;	6✔
115	}
116	logger.debug("Environment variable NANODASH_WEBSITE_URL not set, using default: {}", websiteUrl);	15✔
117	return websiteUrl;	9✔
118	}
119
120	/**
121	* Set the website URL.
122	*
123	* @param websiteUrl the website URL to set
124	*/
125	public void setWebsiteUrl(String websiteUrl) {
126	this.websiteUrl = websiteUrl;	9✔
127	}	3✔
128
129	/**
130	* Check if the application is in ORCID login mode.
131	*
132	* @return true if in ORCID login mode, false otherwise
133	*/
134	public boolean isOrcidLoginMode() {
135	if ("true".equals(System.getenv("NANODASH_ORCID_LOGIN_MODE"))) {	15✔
136	logger.debug("Found environment variable NANODASH_ORCID_LOGIN_MODE with value: {}", true);	15✔
137	return true;	6✔
138	}
139	logger.debug("Environment variable NANODASH_ORCID_LOGIN_MODE not set, using default: {}", orcidLoginMode);	18✔
140	return orcidLoginMode;	9✔
141	}
142
143	/**
144	* Set the ORCID login mode.
145	*
146	* @param orcidLoginMode true to enable ORCID login mode, false to disable
147	*/
148	public void setOrcidLoginMode(boolean orcidLoginMode) {
149	this.orcidLoginMode = orcidLoginMode;	9✔
150	}	3✔
151
152	/**
153	* Get the ORCID client ID.
154	*
155	* @return the ORCID client ID
156	*/
157	public String getOrcidClientId() {
158	String s = System.getenv("NANOPUB_ORCID_CLIENT_ID");	9✔
159	if (s != null && !s.isBlank()) {	15✔
160	logger.debug("Found environment variable NANOPUB_ORCID_CLIENT_ID with value: {}", s);	12✔
161	return s;	6✔
162	}
163	logger.debug("Environment variable NANOPUB_ORCID_CLIENT_ID not set, using default: {}", orcidClientId);	15✔
164	return orcidClientId;	9✔
165	}
166
167	/**
168	* Set the ORCID client ID.
169	*
170	* @param orcidClientId the ORCID client ID to set
171	*/
172	public void setOrcidClientId(String orcidClientId) {
173	this.orcidClientId = orcidClientId;	9✔
174	}	3✔
175
176	/**
177	* Get the ORCID client secret.
178	* .
179	*
180	* @return the ORCID client secret
181	*/
182	public String getOrcidClientSecret() {
183	String s = System.getenv("NANOPUB_ORCID_CLIENT_SECRET");	9✔
184	if (s != null && !s.isBlank()) {	15✔
185	logger.debug("Found environment variable NANOPUB_ORCID_CLIENT_SECRET");	9✔
186	return s;	6✔
187	}
188	logger.debug("Environment variable NANOPUB_ORCID_CLIENT_SECRET not set, using default");	9✔
189	return orcidClientSecret;	9✔
190	}
191
192	/**
193	* Set the ORCID client secret.
194	*
195	* @param orcidClientSecret the ORCID client secret to set
196	*/
197	public void setOrcidClientSecret(String orcidClientSecret) {
198	this.orcidClientSecret = orcidClientSecret;	9✔
199	}	3✔
200
201	/**
202	* Get the setting URI.
203	*
204	* @return the setting URI
205	*/
206	public String getSettingUri() {
207	return settingUri;	9✔
208	}
209
210	/**
211	* Set the setting URI.
212	*
213	* @param settingUri the setting URI to set
214	*/
215	public void setSettingUri(String settingUri) {
216	this.settingUri = settingUri;	9✔
217	}	3✔
218
219	/**
220	* Get the Umami analytics script URL.
221	*
222	* @return the Umami script URL, or null if not configured
223	*/
224	public String getUmamiScriptUrl() {
225	String s = System.getenv("NANODASH_UMAMI_SCRIPT_URL");	9✔
226	if (s != null && !s.isBlank()) return s;	6!
227	return umamiScriptUrl;	9✔
228	}
229
230	/**
231	* Set the Umami analytics script URL.
232	*
233	* @param umamiScriptUrl the Umami script URL to set
234	*/
235	public void setUmamiScriptUrl(String umamiScriptUrl) {
236	this.umamiScriptUrl = umamiScriptUrl;	×
237	}	×
238
239	/**
240	* Get the Umami analytics website ID.
241	*
242	* @return the Umami website ID, or null if not configured
243	*/
244	public String getUmamiWebsiteId() {
245	String s = System.getenv("NANODASH_UMAMI_WEBSITE_ID");	×
246	if (s != null && !s.isBlank()) return s;	×
247	return umamiWebsiteId;	×
248	}
249
250	/**
251	* Set the Umami analytics website ID.
252	*
253	* @param umamiWebsiteId the Umami website ID to set
254	*/
255	public void setUmamiWebsiteId(String umamiWebsiteId) {
256	this.umamiWebsiteId = umamiWebsiteId;	×
257	}	×
258
259	/**
260	* Check whether the local Claude Code chat feature is enabled.
261	*
262	* Intended for locally running single-user instances only; see
263	* docs/claude-code-chat.md.
264	*
265	* @return true if the Claude chat feature is enabled
266	*/
267	public boolean isClaudeChatEnabled() {
268	if ("true".equals(System.getenv("NANODASH_CLAUDE_CHAT_ENABLED"))) {	×
269	return true;	×
270	}
271	return claudeChatEnabled;	×
272	}
273
274	/**
275	* Set whether the local Claude Code chat feature is enabled.
276	*
277	* @param claudeChatEnabled true to enable
278	*/
279	public void setClaudeChatEnabled(boolean claudeChatEnabled) {
280	this.claudeChatEnabled = claudeChatEnabled;	×
281	}	×
282
283	/**
284	* Get the command to run the Claude Code CLI.
285	*
286	* @return the binary name or path (default "claude")
287	*/
288	public String getClaudeChatBinary() {
289	String s = System.getenv("NANODASH_CLAUDE_CHAT_BINARY");	×
290	if (s != null && !s.isBlank()) return s;	×
291	return claudeChatBinary;	×
292	}
293
294	/**
295	* Set the command to run the Claude Code CLI.
296	*
297	* @param claudeChatBinary the binary name or path
298	*/
299	public void setClaudeChatBinary(String claudeChatBinary) {
300	this.claudeChatBinary = claudeChatBinary;	×
301	}	×
302
303	/**
304	* Get the model override for Claude Code chat sessions.
305	*
306	* @return the model name, or null to use the CLI's default
307	*/
308	public String getClaudeChatModel() {
309	String s = System.getenv("NANODASH_CLAUDE_CHAT_MODEL");	×
310	if (s != null && !s.isBlank()) return s;	×
311	return claudeChatModel;	×
312	}
313
314	/**
315	* Set the model override for Claude Code chat sessions.
316	*
317	* @param claudeChatModel the model name
318	*/
319	public void setClaudeChatModel(String claudeChatModel) {
320	this.claudeChatModel = claudeChatModel;	×
321	}	×
322
323	public String getHomeResource() {
324	String s = System.getenv("NANODASH_HOME_RESOURCE");	×
325	if (s != null && !s.isBlank()) {	×
326	logger.debug("Found environment variable NANODASH_HOME_RESOURCE with value: {}", s);	×
327	return s;	×
328	}
329	logger.debug("Environment variable NANODASH_HOME_RESOURCE not set, using default: {}", homeResource);	×
330	return homeResource;	×
331	}
332
333	public void setHomeResource(String homeResource) {
334	this.homeResource = homeResource;	×
335	}	×
336
337	}

knowledgepixels / nanodash / 29339875990

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