FAIRmat-NFDI / pynxtools-microstructure / 27548759966

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FAIRmat Phase 1, final project meeting updates, preparing `v0.1.0` (#4)

* update mtex and adding documentation how to do this

* add documentation how to compile jcvoronoi

* remove badges

* remove workflows

* editing front page and contact

* citation.cff and hyperlinks

* linting and edits on the batch script

* batch queue started 001...

* linting of Matlab files, run-through version

* scripts used for run01 of the run-through

* run-through mtex queue completed successfully

* modifications on the logging

* minor

* figure for the NeXus paper Fig 4 on ElectronDiffraction to inject NXem_ebsd to the D300 example

* run-through parsing script to convert .mtex.h5 files to NeXus/HDF5 using NXem

* test run was successful, missing points before starting the queue for all files (sorted in decreasing priority): i) add eln parsing essentially like for apm, ii) check if mtex content is carried over correctly, iii) add warning for missing phase names in mapping, iv) file aliasing, V) run-through!

* fixed i), ii), and iii), working fine

* fixed iv), ready for the run-through

* nomad_project_names collected and used, run-through version

* files used for the run-through of mtex.h5 files, run-through was successful

* final touches prior the merging

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Co-authored-by: mkuehbach <markus.kuehbach@physik.hu-berlin.de>

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117 of 542 relevant lines covered (21.59%)

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