26284735769

Committed 22 May 2026 11:18AM UTC coverage: 20.838% (+0.09%) from 20.748%

Build # 26284735769

Build Type

Pull #468

github

Committed by

web-flow

Commit Message

Merge ddda26da3 into 65b0c8452

Pull Request Pull Request #468: Source space data from nanopub-query spaces repo

Coverage Stats

1034 of 6284 branches covered (16.45%)

Branch coverage included in aggregate %.

2668 of 11482 relevant lines covered (23.24%)

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0.0

src/main/java/com/knowledgepixels/nanodash/component/ViewList.java

package com.knowledgepixels.nanodash.component;

import com.google.common.collect.ArrayListMultimap;
import com.google.common.collect.Multimap;
import com.knowledgepixels.nanodash.View;
import com.knowledgepixels.nanodash.ViewDisplay;
import com.knowledgepixels.nanodash.domain.AbstractResourceWithProfile;
import com.knowledgepixels.nanodash.domain.Space;
import com.knowledgepixels.nanodash.vocabulary.KPXL_TERMS;
import org.apache.wicket.Component;
import org.apache.wicket.markup.html.WebMarkupContainer;
import org.apache.wicket.markup.html.basic.Label;
import org.apache.wicket.markup.html.link.AbstractLink;
import org.apache.wicket.markup.html.list.ListItem;
import org.apache.wicket.markup.html.list.ListView;
import org.apache.wicket.markup.html.panel.Panel;
import org.eclipse.rdf4j.model.IRI;
import org.nanopub.extra.services.QueryRef;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

import java.util.ArrayList;
import java.util.List;
import java.util.Set;

public class ViewList extends Panel {

    private static final Logger logger = LoggerFactory.getLogger(ViewList.class);

    public ViewList(String markupId, AbstractResourceWithProfile resourceWithProfile) {
        this(markupId, resourceWithProfile, null, null, null, null, null, true, null);
    }

    public ViewList(String markupId, AbstractResourceWithProfile resourceWithProfile, String partId, String nanopubId, Set<IRI> partClasses) {
        this(markupId, resourceWithProfile, partId, nanopubId, partClasses, null, null, true, null);
    }

    public ViewList(String markupId, AbstractResourceWithProfile resourceWithProfile, String partId, String nanopubId, Set<IRI> partClasses, AbstractResourceWithProfile footerResource, List<AbstractLink> footerAdminButtons) {
        this(markupId, resourceWithProfile, partId, nanopubId, partClasses, footerResource, footerAdminButtons, true, null);
    }

    public ViewList(String markupId, AbstractResourceWithProfile resourceWithProfile, String partId, String nanopubId, Set<IRI> partClasses, AbstractResourceWithProfile footerResource, List<AbstractLink> footerAdminButtons, boolean showEmptyNotice) {
        this(markupId, resourceWithProfile, partId, nanopubId, partClasses, footerResource, footerAdminButtons, showEmptyNotice, null);
    }

    public ViewList(String markupId, AbstractResourceWithProfile resourceWithProfile, List<ViewDisplay> explicitViewDisplays) {
        this(markupId, resourceWithProfile, null, null, null, null, null, false, explicitViewDisplays);
    }

    public ViewList(String markupId, AbstractResourceWithProfile resourceWithProfile, List<ViewDisplay> explicitViewDisplays, AbstractResourceWithProfile footerResource, List<AbstractLink> footerAdminButtons) {
        this(markupId, resourceWithProfile, null, null, null, footerResource, footerAdminButtons, false, explicitViewDisplays);
    }

    private ViewList(String markupId, AbstractResourceWithProfile resourceWithProfile, String partId, String nanopubId, Set<IRI> partClasses, AbstractResourceWithProfile footerResource, List<AbstractLink> footerAdminButtons, boolean showEmptyNotice, List<ViewDisplay> explicitViewDisplays) {
        super(markupId);

        final String id = (partId == null ? resourceWithProfile.getId() : partId);
        final String npId = (nanopubId == null ? resourceWithProfile.getNanopubId() : nanopubId);
        final List<ViewDisplay> viewDisplays;
        if (explicitViewDisplays != null) {
            viewDisplays = explicitViewDisplays;
        } else if (partId == null) {
            viewDisplays = resourceWithProfile.getTopLevelViewDisplays();
        } else {
            viewDisplays = resourceWithProfile.getPartLevelViewDisplays(partId, partClasses);
        }

        // Group viewDisplays by the first segment of their structural position (e.g. "4" from "4.4.1.papers")
        List<List<ViewDisplay>> groups = new ArrayList<>();
        String currentGroupKey = null;
        List<ViewDisplay> currentGroup = null;
        for (ViewDisplay vd : viewDisplays) {
            String pos = vd.getStructuralPosition();
            int firstDot = pos.indexOf('.');
            String key = firstDot > 0 ? pos.substring(0, firstDot) : pos;
            if (!key.equals(currentGroupKey)) {
                currentGroup = new ArrayList<>();
                groups.add(currentGroup);
                currentGroupKey = key;
            }
            currentGroup.add(vd);
        }

        add(new ListView<List<ViewDisplay>>("groups", groups) {
            @Override
            protected void populateItem(ListItem<List<ViewDisplay>> groupItem) {
                List<ViewDisplay> group = groupItem.getModelObject();
                groupItem.add(new ListView<ViewDisplay>("views", group) {
                    @Override
                    protected void populateItem(ListItem<ViewDisplay> item) {
                        View view = item.getModelObject().getView();
                        Multimap<String, String> queryRefParams = ArrayListMultimap.create();
                        for (String p : view.getQuery().getPlaceholdersList()) {
                            String paramName = QueryParamField.getParamName(p);
                            if (paramName.equals(view.getQueryField())) {
                                queryRefParams.put(view.getQueryField(), id);
                                if (QueryParamField.isMultiPlaceholder(p) && resourceWithProfile instanceof Space space) {
                                    // TODO Support this also for maintained resources and users.
                                    for (String altId : space.getAltIDs()) {
                                        queryRefParams.put(view.getQueryField(), altId);
                                    }
                                }
                            } else if (paramName.equals(view.getQueryField() + "Namespace") && resourceWithProfile.getNamespace() != null) {
                                queryRefParams.put(view.getQueryField() + "Namespace", resourceWithProfile.getNamespace());
                            } else if (paramName.equals(view.getQueryField() + "Np")) {
                                if (!QueryParamField.isOptional(p) && npId == null) {
                                    queryRefParams.put(view.getQueryField() + "Np", "x:");
                                } else {
                                    queryRefParams.put(view.getQueryField() + "Np", npId);
                                }
                            } else if (paramName.equals("user_pubkey") && QueryParamField.isMultiPlaceholder(p) && resourceWithProfile instanceof Space space) {
                                // TODO Push this per-view pubkey filter server-side
                                // (a published grlc query that gates by user-of-space)
                                // so nanodash doesn't have to expand the placeholder
                                // client-side; see Space.getUserPubkeyHashes.
                                for (String hash : space.getUserPubkeyHashes()) {
                                    queryRefParams.put("user_pubkey", hash);
                                }
                            } else if (paramName.equals("admin_pubkey") && QueryParamField.isMultiPlaceholder(p) && resourceWithProfile instanceof Space space) {
                                // TODO Same as above for admin-of-space filtering.
                                for (String hash : space.getAdminPubkeyHashes()) {
                                    queryRefParams.put("admin_pubkey", hash);
                                }
                            } else if (!QueryParamField.isOptional(p)) {
                                item.add(new Label("view", "<span class=\"negative\">Error: Query has non-optional parameter</span>").setEscapeModelStrings(false));
                                logger.error("Error: Query has non-optional parameter: {} {}", view.getQuery().getQueryId(), p);
                                return;
                            }
                        }
                        QueryRef queryRef = new QueryRef(view.getQuery().getQueryId(), queryRefParams);
                        if (view.getViewType() != null && View.getSupportedViewTypes().contains(view.getViewType())) {
                            if (view.getViewType().equals(KPXL_TERMS.LIST_VIEW)) {
                                item.add(QueryResultListBuilder.create("view", queryRef, item.getModelObject())
                                        .resourceWithProfile(resourceWithProfile)
                                        .pageResource(resourceWithProfile)
                                        .id(id)
                                        .contextId(resourceWithProfile.getId())
                                        .build());
                            } else if (view.getViewType().equals(KPXL_TERMS.TABULAR_VIEW)) {
                                item.add(QueryResultTableBuilder.create("view", queryRef, item.getModelObject())
                                        .resourceWithProfile(resourceWithProfile)
                                        .contextId(resourceWithProfile.getId())
                                        .id(id)
                                        .build());
                            } else if (view.getViewType().equals(KPXL_TERMS.PLAIN_PARAGRAPH_VIEW)) {
                                item.add(QueryResultPlainParagraphBuilder.create("view", queryRef, item.getModelObject())
                                        .pageResource(resourceWithProfile)
                                        .contextId(resourceWithProfile.getId())
                                        .id(id)
                                        .build());
                            } else if (view.getViewType().equals(KPXL_TERMS.NANOPUB_SET_VIEW)) {
                                item.add(QueryResultNanopubSetBuilder.create("view", queryRef, item.getModelObject())
                                        .pageResource(resourceWithProfile)
                                        .contextId(resourceWithProfile.getId())
                                        .build());
                            } else if (view.getViewType().equals(KPXL_TERMS.ITEM_LIST_VIEW)) {
                                item.add(QueryResultItemListBuilder.create("view", queryRef, item.getModelObject())
                                        .resourceWithProfile(resourceWithProfile)
                                        .pageResource(resourceWithProfile)
                                        .id(id)
                                        .contextId(resourceWithProfile.getId())
                                        .build());
                            } else {
                                item.add(new Label("view", "<span class=\"negative\">View type \"" + view.getViewType().stringValue() + "\" is supported but its view is not implemented yet</span>").setEscapeModelStrings(false));
                                logger.error("View type \"{}\" is supported but its view is not implemented yet", view.getViewType().stringValue());
                            }
                        } else {
                            item.add(new Label("view", "<span class=\"negative\">Unsupported view type</span>").setEscapeModelStrings(false));
                            logger.error("Unsupported view type.");
                        }
                    }
                });
            }
        });

        add(new WebMarkupContainer("emptynotice").setVisible(showEmptyNotice && viewDisplays.isEmpty()));

        WebMarkupContainer footerSection = new WebMarkupContainer("footer-section");
        if (footerAdminButtons != null) {
            footerSection.add(new ButtonList("footer-buttons",
                    footerResource != null ? footerResource : resourceWithProfile,
                    null, null, footerAdminButtons));
        } else {
            footerSection.setVisible(false);
            footerSection.add(new Label("footer-buttons").setVisible(false));
        }
        add(footerSection);

        add(new WebMarkupContainer("page-footer").setVisible(false));
    }

    public void setPageFooter(Component footer) {
        replace(footer);
    }

}

1	package com.knowledgepixels.nanodash.component;
2
3	import com.google.common.collect.ArrayListMultimap;
4	import com.google.common.collect.Multimap;
5	import com.knowledgepixels.nanodash.View;
6	import com.knowledgepixels.nanodash.ViewDisplay;
7	import com.knowledgepixels.nanodash.domain.AbstractResourceWithProfile;
8	import com.knowledgepixels.nanodash.domain.Space;
9	import com.knowledgepixels.nanodash.vocabulary.KPXL_TERMS;
10	import org.apache.wicket.Component;
11	import org.apache.wicket.markup.html.WebMarkupContainer;
12	import org.apache.wicket.markup.html.basic.Label;
13	import org.apache.wicket.markup.html.link.AbstractLink;
14	import org.apache.wicket.markup.html.list.ListItem;
15	import org.apache.wicket.markup.html.list.ListView;
16	import org.apache.wicket.markup.html.panel.Panel;
17	import org.eclipse.rdf4j.model.IRI;
18	import org.nanopub.extra.services.QueryRef;
19	import org.slf4j.Logger;
20	import org.slf4j.LoggerFactory;
21
22	import java.util.ArrayList;
23	import java.util.List;
24	import java.util.Set;
25
26	public class ViewList extends Panel {
27
28	private static final Logger logger = LoggerFactory.getLogger(ViewList.class);	×
29
30	public ViewList(String markupId, AbstractResourceWithProfile resourceWithProfile) {
31	this(markupId, resourceWithProfile, null, null, null, null, null, true, null);	×
32	}	×
33
34	public ViewList(String markupId, AbstractResourceWithProfile resourceWithProfile, String partId, String nanopubId, Set<IRI> partClasses) {
35	this(markupId, resourceWithProfile, partId, nanopubId, partClasses, null, null, true, null);	×
36	}	×
37
38	public ViewList(String markupId, AbstractResourceWithProfile resourceWithProfile, String partId, String nanopubId, Set<IRI> partClasses, AbstractResourceWithProfile footerResource, List<AbstractLink> footerAdminButtons) {
39	this(markupId, resourceWithProfile, partId, nanopubId, partClasses, footerResource, footerAdminButtons, true, null);	×
40	}	×
41
42	public ViewList(String markupId, AbstractResourceWithProfile resourceWithProfile, String partId, String nanopubId, Set<IRI> partClasses, AbstractResourceWithProfile footerResource, List<AbstractLink> footerAdminButtons, boolean showEmptyNotice) {
43	this(markupId, resourceWithProfile, partId, nanopubId, partClasses, footerResource, footerAdminButtons, showEmptyNotice, null);	×
44	}	×
45
46	public ViewList(String markupId, AbstractResourceWithProfile resourceWithProfile, List<ViewDisplay> explicitViewDisplays) {
47	this(markupId, resourceWithProfile, null, null, null, null, null, false, explicitViewDisplays);	×
48	}	×
49
50	public ViewList(String markupId, AbstractResourceWithProfile resourceWithProfile, List<ViewDisplay> explicitViewDisplays, AbstractResourceWithProfile footerResource, List<AbstractLink> footerAdminButtons) {
51	this(markupId, resourceWithProfile, null, null, null, footerResource, footerAdminButtons, false, explicitViewDisplays);	×
52	}	×
53
54	private ViewList(String markupId, AbstractResourceWithProfile resourceWithProfile, String partId, String nanopubId, Set<IRI> partClasses, AbstractResourceWithProfile footerResource, List<AbstractLink> footerAdminButtons, boolean showEmptyNotice, List<ViewDisplay> explicitViewDisplays) {
55	super(markupId);	×
56
57	final String id = (partId == null ? resourceWithProfile.getId() : partId);	×
58	final String npId = (nanopubId == null ? resourceWithProfile.getNanopubId() : nanopubId);	×
59	final List<ViewDisplay> viewDisplays;
60	if (explicitViewDisplays != null) {	×
61	viewDisplays = explicitViewDisplays;	×
62	} else if (partId == null) {	×
63	viewDisplays = resourceWithProfile.getTopLevelViewDisplays();	×
64	} else {
65	viewDisplays = resourceWithProfile.getPartLevelViewDisplays(partId, partClasses);	×
66	}
67
68	// Group viewDisplays by the first segment of their structural position (e.g. "4" from "4.4.1.papers")
69	List<List<ViewDisplay>> groups = new ArrayList<>();	×
70	String currentGroupKey = null;	×
71	List<ViewDisplay> currentGroup = null;	×
72	for (ViewDisplay vd : viewDisplays) {	×
73	String pos = vd.getStructuralPosition();	×
74	int firstDot = pos.indexOf('.');	×
75	String key = firstDot > 0 ? pos.substring(0, firstDot) : pos;	×
76	if (!key.equals(currentGroupKey)) {	×
77	currentGroup = new ArrayList<>();	×
78	groups.add(currentGroup);	×
79	currentGroupKey = key;	×
80	}
81	currentGroup.add(vd);	×
82	}	×
83
84	add(new ListView<List<ViewDisplay>>("groups", groups) {	×
85	@Override
86	protected void populateItem(ListItem<List<ViewDisplay>> groupItem) {
87	List<ViewDisplay> group = groupItem.getModelObject();	×
88	groupItem.add(new ListView<ViewDisplay>("views", group) {	×
89	@Override
90	protected void populateItem(ListItem<ViewDisplay> item) {
91	View view = item.getModelObject().getView();	×
92	Multimap<String, String> queryRefParams = ArrayListMultimap.create();	×
93	for (String p : view.getQuery().getPlaceholdersList()) {	×
94	String paramName = QueryParamField.getParamName(p);	×
95	if (paramName.equals(view.getQueryField())) {	×
96	queryRefParams.put(view.getQueryField(), id);	×
97	if (QueryParamField.isMultiPlaceholder(p) && resourceWithProfile instanceof Space space) {	×
98	// TODO Support this also for maintained resources and users.
99	for (String altId : space.getAltIDs()) {	×
100	queryRefParams.put(view.getQueryField(), altId);	×
101	}	×
102	}
103	} else if (paramName.equals(view.getQueryField() + "Namespace") && resourceWithProfile.getNamespace() != null) {	×
104	queryRefParams.put(view.getQueryField() + "Namespace", resourceWithProfile.getNamespace());	×
105	} else if (paramName.equals(view.getQueryField() + "Np")) {	×
106	if (!QueryParamField.isOptional(p) && npId == null) {	×
107	queryRefParams.put(view.getQueryField() + "Np", "x:");	×
108	} else {
109	queryRefParams.put(view.getQueryField() + "Np", npId);	×
110	}
111	} else if (paramName.equals("user_pubkey") && QueryParamField.isMultiPlaceholder(p) && resourceWithProfile instanceof Space space) {	×
112	// TODO Push this per-view pubkey filter server-side
113	// (a published grlc query that gates by user-of-space)
114	// so nanodash doesn't have to expand the placeholder
115	// client-side; see Space.getUserPubkeyHashes.
116	for (String hash : space.getUserPubkeyHashes()) {	×
117	queryRefParams.put("user_pubkey", hash);	×
118	}	×
119	} else if (paramName.equals("admin_pubkey") && QueryParamField.isMultiPlaceholder(p) && resourceWithProfile instanceof Space space) {	×
120	// TODO Same as above for admin-of-space filtering.
121	for (String hash : space.getAdminPubkeyHashes()) {	×
122	queryRefParams.put("admin_pubkey", hash);	×
123	}	×
124	} else if (!QueryParamField.isOptional(p)) {	×
125	item.add(new Label("view", "<span class=\"negative\">Error: Query has non-optional parameter</span>").setEscapeModelStrings(false));	×
126	logger.error("Error: Query has non-optional parameter: {} {}", view.getQuery().getQueryId(), p);	×
127	return;	×
128	}
129	}	×
130	QueryRef queryRef = new QueryRef(view.getQuery().getQueryId(), queryRefParams);	×
131	if (view.getViewType() != null && View.getSupportedViewTypes().contains(view.getViewType())) {	×
132	if (view.getViewType().equals(KPXL_TERMS.LIST_VIEW)) {	×
133	item.add(QueryResultListBuilder.create("view", queryRef, item.getModelObject())	×
134	.resourceWithProfile(resourceWithProfile)	×
135	.pageResource(resourceWithProfile)	×
136	.id(id)	×
137	.contextId(resourceWithProfile.getId())	×
138	.build());	×
139	} else if (view.getViewType().equals(KPXL_TERMS.TABULAR_VIEW)) {	×
140	item.add(QueryResultTableBuilder.create("view", queryRef, item.getModelObject())	×
141	.resourceWithProfile(resourceWithProfile)	×
142	.contextId(resourceWithProfile.getId())	×
143	.id(id)	×
144	.build());	×
145	} else if (view.getViewType().equals(KPXL_TERMS.PLAIN_PARAGRAPH_VIEW)) {	×
146	item.add(QueryResultPlainParagraphBuilder.create("view", queryRef, item.getModelObject())	×
147	.pageResource(resourceWithProfile)	×
148	.contextId(resourceWithProfile.getId())	×
149	.id(id)	×
150	.build());	×
151	} else if (view.getViewType().equals(KPXL_TERMS.NANOPUB_SET_VIEW)) {	×
152	item.add(QueryResultNanopubSetBuilder.create("view", queryRef, item.getModelObject())	×
153	.pageResource(resourceWithProfile)	×
154	.contextId(resourceWithProfile.getId())	×
155	.build());	×
156	} else if (view.getViewType().equals(KPXL_TERMS.ITEM_LIST_VIEW)) {	×
157	item.add(QueryResultItemListBuilder.create("view", queryRef, item.getModelObject())	×
158	.resourceWithProfile(resourceWithProfile)	×
159	.pageResource(resourceWithProfile)	×
160	.id(id)	×
161	.contextId(resourceWithProfile.getId())	×
162	.build());	×
163	} else {
164	item.add(new Label("view", "<span class=\"negative\">View type \"" + view.getViewType().stringValue() + "\" is supported but its view is not implemented yet</span>").setEscapeModelStrings(false));	×
165	logger.error("View type \"{}\" is supported but its view is not implemented yet", view.getViewType().stringValue());	×
166	}
167	} else {
168	item.add(new Label("view", "<span class=\"negative\">Unsupported view type</span>").setEscapeModelStrings(false));	×
169	logger.error("Unsupported view type.");	×
170	}
171	}	×
172	});
173	}	×
174	});
175
176	add(new WebMarkupContainer("emptynotice").setVisible(showEmptyNotice && viewDisplays.isEmpty()));	×
177
178	WebMarkupContainer footerSection = new WebMarkupContainer("footer-section");	×
179	if (footerAdminButtons != null) {	×
180	footerSection.add(new ButtonList("footer-buttons",	×
181	footerResource != null ? footerResource : resourceWithProfile,	×
182	null, null, footerAdminButtons));
183	} else {
184	footerSection.setVisible(false);	×
185	footerSection.add(new Label("footer-buttons").setVisible(false));	×
186	}
187	add(footerSection);	×
188
189	add(new WebMarkupContainer("page-footer").setVisible(false));	×
190	}	×
191
192	public void setPageFooter(Component footer) {
193	replace(footer);	×
194	}	×
195
196	}

knowledgepixels / nanodash / 26284735769

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