• Home
  • Features
  • Pricing
  • Docs
  • Announcements
  • Sign In

MuellerSeb / nml-tools / 26040350358

18 May 2026 02:36PM UTC coverage: 58.354% (+1.9%) from 56.443%
26040350358

Pull #19

github

MuellerSeb
Add Python wrapper handle invalidation
Pull Request #19: F2py wrapper support

233 of 349 new or added lines in 4 files covered. (66.76%)

1 existing line in 1 file now uncovered.

1652 of 2831 relevant lines covered (58.35%)

0.58 hits per line

Source File
Press 'n' to go to next uncovered line, 'b' for previous

91.24
/src/nml_tools/codegen_f2py.py
1
"""f2py and Python wrapper code generation."""
2

3
from __future__ import annotations
1✔
4

5
import keyword
1✔
6
import re
1✔
7
from dataclasses import dataclass
1✔
8
from pathlib import Path
1✔
9
from typing import Any, Iterable, cast
1✔
10

11
from jinja2 import Environment, FileSystemLoader, StrictUndefined
1✔
12

13
from .codegen_fortran import (
1✔
14
    FieldSpec,
15
    FieldTypeInfo,
16
    _build_context,
17
    _field_type_info,
18
)
19

20
_TEMPLATE_ENV = Environment(
1✔
21
    loader=FileSystemLoader(Path(__file__).resolve().parent / "templates"),
22
    trim_blocks=True,
23
    lstrip_blocks=False,
24
    keep_trailing_newline=True,
25
    undefined=StrictUndefined,
26
)
27

28

29
@dataclass
1✔
30
class F2pyArgumentSpec:
1✔
31
    """Python wrapper argument metadata."""
32

33
    name: str
1✔
34
    title: str
1✔
35
    required: bool
1✔
36
    rank: int
1✔
37
    numpy_dtype: str | None
1✔
38
    dummy_value: str
1✔
39
    doc_type: str
1✔
40
    requirement: str
1✔
41
    has_flag: str | None = None
1✔
42

43

44
@dataclass
1✔
45
class F2pyArrayDimensionSpec:
1✔
46
    """Dimension arguments for a f2py-visible array dummy."""
47

48
    field_name: str
1✔
49
    names: list[str]
1✔
50

51

52
@dataclass
1✔
53
class F2pyNamelistSpec:
1✔
54
    """Metadata needed for f2py wrapper generation."""
55

56
    namelist_name: str
1✔
57
    brief: str
1✔
58
    details: str
1✔
59
    details_lines: list[str]
1✔
60
    module_name: str
1✔
61
    type_name: str
1✔
62
    helper_module: str
1✔
63
    kind_module: str
1✔
64
    kind_imports: list[str]
1✔
65
    f2py_module_name: str
1✔
66
    resolve_handle_name: str
1✔
67
    handle_ctype: str
1✔
68
    errmsg_len: int
1✔
69
    argument_list: list[str]
1✔
70
    argument_declarations: list[str]
1✔
71
    bridge_declarations: list[str]
1✔
72
    bridge_assignments: list[str]
1✔
73
    set_call_arguments: list[str]
1✔
74
    array_dimensions: list[F2pyArrayDimensionSpec]
1✔
75
    required_args: list[F2pyArgumentSpec]
1✔
76
    optional_args: list[F2pyArgumentSpec]
1✔
77
    all_args: list[F2pyArgumentSpec]
1✔
78

79

80
@dataclass
1✔
81
class PythonWrapperSpec:
1✔
82
    """Metadata needed for Python wrapper generation."""
83

84
    class_name: str
1✔
85
    namelist_name: str
1✔
86
    brief: str
1✔
87
    f2py_module_name: str
1✔
88
    extension_module: str
1✔
89
    required_args: list[F2pyArgumentSpec]
1✔
90
    optional_args: list[F2pyArgumentSpec]
1✔
91
    all_args: list[F2pyArgumentSpec]
1✔
92

93

94
@dataclass
1✔
95
class F2pyKindUsage:
1✔
96
    """Kind aliases used by f2py wrapper dummy arguments."""
97

98
    real: set[str]
1✔
99
    integer: set[str]
1✔
100

101

102
@dataclass
1✔
103
class F2pyCTypeMap:
1✔
104
    """Explicit C type mapping for f2py kinds."""
105

106
    real: dict[str, str]
1✔
107
    integer: dict[str, str]
1✔
108

109

110
def generate_f2py_wrappers(
1✔
111
    schemas: Iterable[dict[str, Any]],
112
    output: str | Path,
113
    *,
114
    helper_module: str = "nml_helper",
115
    kind_module: str | None = None,
116
    kind_map: dict[str, str] | None = None,
117
    kind_allowlist: Iterable[str] | None = None,
118
    constants: dict[str, int | float] | None = None,
119
    errmsg_len: int = 1024,
120
) -> None:
121
    """Generate f2py-facing Fortran wrappers for *schemas* at *output*."""
122
    specs = [
1✔
123
        build_f2py_namelist_spec(
124
            schema,
125
            helper_module=helper_module,
126
            kind_module=kind_module,
127
            kind_map=kind_map,
128
            kind_allowlist=kind_allowlist,
129
            constants=constants,
130
            errmsg_len=errmsg_len,
131
        )
132
        for schema in schemas
133
    ]
134
    output_path = Path(output)
1✔
135
    rendered = _TEMPLATE_ENV.get_template("f2py_wrappers.f90.j2").render(
1✔
136
        {"file_name": output_path.name, "specs": specs}
137
    )
138
    output_path.parent.mkdir(parents=True, exist_ok=True)
1✔
139
    output_path.write_text(rendered, encoding="ascii")
1✔
140

141

142
def generate_python_wrappers(
1✔
143
    specs: Iterable[tuple[F2pyNamelistSpec, str]],
144
    output: str | Path,
145
    *,
146
    py_style: str = "numpy",
147
) -> None:
148
    """Generate Python wrapper classes for f2py namelist *specs* at *output*."""
149
    if py_style not in {"numpy", "doxygen"}:
1✔
150
        raise ValueError("python documentation style must be 'numpy' or 'doxygen'")
1✔
151
    output_path = Path(output)
1✔
152
    spec_entries = list(specs)
1✔
153
    extension_modules: set[str] = set()
1✔
154
    for _, extension_module in spec_entries:
1✔
155
        _validate_python_module_name(extension_module)
1✔
156
        extension_modules.add(extension_module)
1✔
157
    classes: list[PythonWrapperSpec] = []
1✔
158
    for spec, extension_module in spec_entries:
1✔
159
        classes.append(
1✔
160
            PythonWrapperSpec(
161
                class_name=_class_name(spec.namelist_name),
162
                namelist_name=spec.namelist_name,
163
                brief=spec.brief,
164
                f2py_module_name=spec.f2py_module_name,
165
                extension_module=extension_module,
166
                required_args=spec.required_args,
167
                optional_args=spec.optional_args,
168
                all_args=spec.all_args,
169
            )
170
        )
171
    rendered = _TEMPLATE_ENV.get_template("python_wrappers.py.j2").render(
1✔
172
        {"imports": sorted(extension_modules), "classes": classes, "py_style": py_style}
173
    )
174
    output_path.parent.mkdir(parents=True, exist_ok=True)
1✔
175
    output_path.write_text(rendered, encoding="ascii")
1✔
176

177

178
def generate_f2cmap(
1✔
179
    output: str | Path,
180
    usage: F2pyKindUsage,
181
    c_types: F2pyCTypeMap,
182
) -> None:
183
    """Generate a .f2py_f2cmap file for the explicitly mapped *usage*."""
184
    missing_real = sorted(usage.real - set(c_types.real))
1✔
185
    missing_integer = sorted(usage.integer - set(c_types.integer))
1✔
186
    if missing_real:
1✔
187
        raise ValueError("missing f2py real C type mappings: " + ", ".join(missing_real))
1✔
188
    if missing_integer:
1✔
NEW
189
        raise ValueError(
×
190
            "missing f2py integer C type mappings: " + ", ".join(missing_integer)
191
        )
192

193
    integer_map = dict(c_types.integer)
1✔
194
    integer_map.setdefault("c_intptr_t", "long_long")
1✔
195
    real_items = ", ".join(
1✔
196
        f"{name}={c_types.real[name]!r}" for name in sorted(usage.real)
197
    )
198
    integer_items = ", ".join(
1✔
199
        f"{name}={integer_map[name]!r}" for name in sorted(usage.integer | {"c_intptr_t"})
200
    )
201
    rendered = f"dict(real=dict({real_items}), integer=dict({integer_items}))\n"
1✔
202
    output_path = Path(output)
1✔
203
    output_path.parent.mkdir(parents=True, exist_ok=True)
1✔
204
    output_path.write_text(rendered, encoding="ascii")
1✔
205

206

207
def collect_f2py_kind_usage(
1✔
208
    schemas: Iterable[dict[str, Any]],
209
    *,
210
    constants: dict[str, int | float] | None = None,
211
) -> F2pyKindUsage:
212
    """Collect schema kind aliases used in f2py wrapper arguments."""
213
    usage = F2pyKindUsage(real=set(), integer=set())
1✔
214
    for schema in schemas:
1✔
215
        for _, type_info in _iter_field_type_infos(schema, constants):
1✔
216
            category = (
1✔
217
                type_info.element_category
218
                if type_info.category == "array"
219
                else type_info.category
220
            )
221
            if type_info.kind is None:
1✔
222
                continue
1✔
223
            if category == "real":
1✔
224
                usage.real.add(type_info.kind)
1✔
225
            elif category == "integer":
1✔
226
                usage.integer.add(type_info.kind)
1✔
227
    return usage
1✔
228

229

230
def merge_f2py_kind_usage(usages: Iterable[F2pyKindUsage]) -> F2pyKindUsage:
1✔
231
    """Merge multiple f2py kind usage objects."""
NEW
232
    merged = F2pyKindUsage(real=set(), integer=set())
×
NEW
233
    for usage in usages:
×
NEW
234
        merged.real.update(usage.real)
×
NEW
235
        merged.integer.update(usage.integer)
×
NEW
236
    return merged
×
237

238

239
def build_f2py_namelist_spec(
1✔
240
    schema: dict[str, Any],
241
    *,
242
    helper_module: str = "nml_helper",
243
    kind_module: str | None = None,
244
    kind_map: dict[str, str] | None = None,
245
    kind_allowlist: Iterable[str] | None = None,
246
    constants: dict[str, int | float] | None = None,
247
    errmsg_len: int = 1024,
248
) -> F2pyNamelistSpec:
249
    """Build f2py wrapper metadata for one namelist schema."""
250
    context = _build_context(
1✔
251
        schema,
252
        helper_module=helper_module,
253
        kind_module=kind_module,
254
        kind_map=kind_map,
255
        kind_allowlist=kind_allowlist,
256
        constants=constants,
257
        module_doc=None,
258
    )
259
    fields = cast("list[FieldSpec]", context["fields"])
1✔
260
    type_infos = {
1✔
261
        name: type_info for name, type_info in _iter_field_type_infos(schema, constants)
262
    }
263
    required_args: list[F2pyArgumentSpec] = []
1✔
264
    optional_args: list[F2pyArgumentSpec] = []
1✔
265
    argument_list: list[str] = []
1✔
266
    argument_declarations: list[str] = []
1✔
267
    bridge_declarations: list[str] = []
1✔
268
    bridge_assignments: list[str] = []
1✔
269
    set_call_arguments: list[str] = []
1✔
270
    array_dimensions: list[F2pyArrayDimensionSpec] = []
1✔
271
    for field in fields:
1✔
272
        type_info = type_infos[field.name]
1✔
273
        rank = len(type_info.dimensions) if type_info.category == "array" else 0
1✔
274
        has_flag = None if field.required else f"has_{field.name}"
1✔
275
        spec = F2pyArgumentSpec(
1✔
276
            name=field.name,
277
            title=_one_line(field.title),
278
            required=field.required,
279
            rank=rank,
280
            numpy_dtype=_numpy_dtype(type_info),
281
            dummy_value=_python_dummy_value(type_info),
282
            doc_type=_python_doc_type(type_info),
283
            requirement="required" if field.required else "optional",
284
            has_flag=has_flag,
285
        )
286
        if field.required:
1✔
287
            required_args.append(spec)
1✔
288
        else:
289
            optional_args.append(spec)
1✔
290
        field_arguments, field_declarations = _f2py_field_arguments(field, type_info)
1✔
291
        argument_list.extend(field_arguments)
1✔
292
        argument_declarations.extend(field_declarations)
1✔
293
        if rank > 0:
1✔
294
            dim_names = _array_dimension_argument_names(field.name, rank)
1✔
295
            array_dimensions.append(
1✔
296
                F2pyArrayDimensionSpec(field_name=field.name, names=dim_names)
297
            )
298
        if has_flag is not None:
1✔
299
            argument_list.append(has_flag)
1✔
300
            argument_declarations.append(
1✔
301
                f"logical, intent(in) :: {has_flag} !< whether {field.name} was provided"
302
            )
303
            bridge_declarations.append(_optional_bridge_declaration(field.name, type_info))
1✔
304
            bridge_assignments.append(_optional_bridge_assignment(field.name, type_info))
1✔
305
            set_call_arguments.append(f"{field.name}=maybe_{field.name}")
1✔
306
        else:
307
            set_call_arguments.append(f"{field.name}={field.name}")
1✔
308

309
    namelist_name = cast("str", context["namelist_name"])
1✔
310
    details = cast("str", context["details_text"])
1✔
311
    return F2pyNamelistSpec(
1✔
312
        namelist_name=namelist_name,
313
        brief=_one_line(cast("str", context["brief_text"])),
314
        details=details,
315
        details_lines=details.splitlines() or [details],
316
        module_name=cast("str", context["module_name"]),
317
        type_name=cast("str", context["type_name"]),
318
        helper_module=helper_module,
319
        kind_module=cast("str", context["kind_module"]),
320
        kind_imports=cast("list[str]", context["kind_imports"]),
321
        f2py_module_name=f"f2py_{namelist_name}",
322
        resolve_handle_name=f"{context['module_name']}_resolve_handle",
323
        handle_ctype="c_intptr_t",
324
        errmsg_len=errmsg_len,
325
        argument_list=argument_list,
326
        argument_declarations=argument_declarations,
327
        bridge_declarations=bridge_declarations,
328
        bridge_assignments=bridge_assignments,
329
        set_call_arguments=set_call_arguments,
330
        array_dimensions=array_dimensions,
331
        required_args=required_args,
332
        optional_args=optional_args,
333
        all_args=required_args + optional_args,
334
    )
335

336

337
def _iter_field_type_infos(
1✔
338
    schema: dict[str, Any],
339
    constants: dict[str, int | float] | None,
340
) -> list[tuple[str, FieldTypeInfo]]:
341
    properties = schema.get("properties")
1✔
342
    if not isinstance(properties, dict):
1✔
NEW
343
        raise ValueError("schema must define object 'properties'")
×
344
    entries: list[tuple[str, FieldTypeInfo]] = []
1✔
345
    seen: set[str] = set()
1✔
346
    for raw_name, prop in properties.items():
1✔
347
        if not isinstance(raw_name, str):
1✔
NEW
348
            raise ValueError("property names must be strings")
×
349
        if not isinstance(prop, dict):
1✔
NEW
350
            raise ValueError(f"property '{raw_name}' must be an object")
×
351
        name = raw_name.lower()
1✔
352
        if name in seen:
1✔
NEW
353
            raise ValueError(f"duplicate property '{raw_name}'")
×
354
        seen.add(name)
1✔
355
        entries.append((name, _field_type_info(prop, constants)))
1✔
356
    return entries
1✔
357

358

359
def _class_name(namelist_name: str) -> str:
1✔
360
    parts = [part for part in re.split(r"[^0-9A-Za-z]+", namelist_name) if part]
1✔
361
    if not parts:
1✔
NEW
362
        return "Namelist"
×
363
    name = "".join(part[:1].upper() + part[1:] for part in parts)
1✔
364
    if name[0].isdigit():
1✔
NEW
365
        name = f"Namelist{name}"
×
366
    if keyword.iskeyword(name):
1✔
NEW
367
        name = f"{name}Namelist"
×
368
    return name
1✔
369

370

371
def _numpy_dtype(type_info: FieldTypeInfo) -> str | None:
1✔
372
    category = (
1✔
373
        type_info.element_category
374
        if type_info.category == "array"
375
        else type_info.category
376
    )
377
    if category == "real":
1✔
378
        return "float"
1✔
379
    if category == "integer":
1✔
380
        return "int"
1✔
381
    if category == "boolean":
1✔
NEW
382
        return "bool"
×
383
    if category == "string":
1✔
384
        return "str"
1✔
NEW
385
    return None
×
386

387

388
def _python_dummy_value(type_info: FieldTypeInfo) -> str:
1✔
389
    category = (
1✔
390
        type_info.element_category
391
        if type_info.category == "array"
392
        else type_info.category
393
    )
394
    if category == "real":
1✔
395
        return "0.0"
1✔
396
    if category == "integer":
1✔
397
        return "0"
1✔
398
    if category == "boolean":
1✔
NEW
399
        return "False"
×
400
    if category == "string":
1✔
401
        return '""'
1✔
NEW
402
    return "None"
×
403

404

405
def _python_doc_type(type_info: FieldTypeInfo) -> str:
1✔
406
    category = (
1✔
407
        type_info.element_category
408
        if type_info.category == "array"
409
        else type_info.category
410
    )
411
    if category == "real":
1✔
412
        type_name = "float"
1✔
413
    elif category == "integer":
1✔
414
        type_name = "int"
1✔
415
    elif category == "boolean":
1✔
NEW
416
        type_name = "bool"
×
417
    elif category == "string":
1✔
418
        type_name = "str"
1✔
419
    else:
NEW
420
        type_name = "Any"
×
421
    if type_info.category == "array":
1✔
422
        return f"array_like of {type_name}"
1✔
423
    return type_name
1✔
424

425

426
def _one_line(value: str) -> str:
1✔
427
    return " ".join(value.splitlines()).strip()
1✔
428

429

430
def _array_dimension_argument_names(name: str, rank: int) -> list[str]:
1✔
431
    return [f"{name}_n{idx}" for idx in range(1, rank + 1)]
1✔
432

433

434
def _f2py_field_arguments(
1✔
435
    field: FieldSpec,
436
    type_info: FieldTypeInfo,
437
) -> tuple[list[str], list[str]]:
438
    requirement = "required" if field.required else "optional"
1✔
439
    if type_info.category != "array":
1✔
440
        return [field.name], [
1✔
441
            f"{type_info.arg_type_spec}, intent(in) :: {field.name} "
442
            f"!< {_one_line(field.title)} ({requirement})"
443
        ]
444

445
    dim_names = _array_dimension_argument_names(field.name, len(type_info.dimensions))
1✔
446
    dims = ", ".join(dim_names)
1✔
447
    declarations = [
1✔
448
        f"integer, intent(in) :: {dim_name} !< extent for {field.name}"
449
        for dim_name in dim_names
450
    ]
451
    declarations.append(
1✔
452
        f"{type_info.arg_type_spec}, dimension({dims}), intent(in) :: {field.name} "
453
        f"!< {_one_line(field.title)} ({requirement})"
454
    )
455
    return [*dim_names, field.name], declarations
1✔
456

457

458
def _optional_bridge_declaration(name: str, type_info: FieldTypeInfo) -> str:
1✔
459
    if type_info.category == "array":
1✔
460
        dims = ", ".join(":" for _ in type_info.dimensions)
1✔
461
        return f"{type_info.arg_type_spec}, dimension({dims}), allocatable :: maybe_{name}"
1✔
462
    if type_info.category == "string":
1✔
NEW
463
        return f"character(len=:), allocatable :: maybe_{name}"
×
464
    return f"{type_info.arg_type_spec}, allocatable :: maybe_{name}"
1✔
465

466

467
def _optional_bridge_assignment(name: str, type_info: FieldTypeInfo) -> str:
1✔
468
    has_flag = f"has_{name}"
1✔
469
    maybe_name = f"maybe_{name}"
1✔
470
    if type_info.category == "array":
1✔
471
        dims = ", ".join(_array_dimension_argument_names(name, len(type_info.dimensions)))
1✔
472
        return (
1✔
473
            f"if ({has_flag}) then\n"
474
            f"  allocate({maybe_name}({dims}))\n"
475
            f"  {maybe_name} = {name}\n"
476
            "end if"
477
        )
478
    if type_info.category == "string":
1✔
NEW
479
        return (
×
480
            f"if ({has_flag}) then\n"
481
            f"  {maybe_name} = {name}\n"
482
            "end if"
483
        )
484
    return (
1✔
485
        f"if ({has_flag}) then\n"
486
        f"  allocate({maybe_name})\n"
487
        f"  {maybe_name} = {name}\n"
488
        "end if"
489
    )
490

491

492
def _validate_python_module_name(module_name: str) -> None:
1✔
493
    if not module_name.isidentifier() or keyword.iskeyword(module_name):
1✔
NEW
494
        raise ValueError(
×
495
            f"f2py extension module name '{module_name}' must be a valid Python identifier"
496
        )
STATUS · Troubleshooting · Open an Issue · Sales · Support · CAREERS · ENTERPRISE · START FREE · SCHEDULE DEMO
ANNOUNCEMENTS · TWITTER · TOS & SLA · Supported CI Services · What's a CI service? · Automated Testing

© 2026 Coveralls, Inc