25520083609

Committed 07 May 2026 08:24PM UTC coverage: 70.596% (+0.06%) from 70.539%

Build # 25520083609

Build Type

push

github

Committed by

web-flow

Commit Message

Fix h5ad write failure on missing VDJ barcodes; misc bug cleanup (#4)

- loader.combine_gex_and_vdj: preserve bool/int dtypes after reindex so
  GEX cells without a VDJ contig get False / 0 instead of NaN. Fixes
  TypeError raised by anndata when writing has_TRA / TRA_count etc. to
  /obs (issue #3).
- loader: count productive contigs correctly when CellRanger exports the
  column as a string instead of bool.
- annotate.match_clonotypes: initialize db_match_partial=False so rows
  that never hit the partial-match fallback are False rather than NaN.
- model._fit_logistic_newton: log a warning when bailing on a
  near-singular Hessian, so callers can tell an unconverged fit from a
  clean one.
- Bump version to 0.2.7.

Coverage Stats

4072 of 5768 relevant lines covered (70.6%)

2.82 hits per line

Source File
Press 'n' to go to next uncovered line, 'b' for previous

86.64

/loader.py

Source Not Available

The file "loader.py" isn't available on github. Either it's been removed, or the repo root directory needs to be updated.

pirl-unc / tcrsift / 25520083609

Source File Press 'n' to go to next uncovered line, 'b' for previous

Source Not Available

Source File
Press 'n' to go to next uncovered line, 'b' for previous