23429117751

Committed 23 Mar 2026 08:56AM UTC coverage: 16.395% (-0.001%) from 16.396%

Build # 23429117751

Build Type

push

github

Committed by

tkuhn

Commit Message

fix: show space and maintained resource labels instead of URI suffixes when linked

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

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746 of 5613 branches covered (13.29%)

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0.0

src/main/java/com/knowledgepixels/nanodash/component/ReadonlyItem.java

package com.knowledgepixels.nanodash.component;

import com.knowledgepixels.nanodash.LocalUri;
import com.knowledgepixels.nanodash.RestrictedChoice;
import com.knowledgepixels.nanodash.domain.User;
import com.knowledgepixels.nanodash.Utils;
import com.knowledgepixels.nanodash.component.StatementItem.RepetitionGroup;
import com.knowledgepixels.nanodash.domain.IndividualAgent;
import com.knowledgepixels.nanodash.domain.MaintainedResource;
import com.knowledgepixels.nanodash.domain.Space;
import com.knowledgepixels.nanodash.page.ExplorePage;
import com.knowledgepixels.nanodash.repository.MaintainedResourceRepository;
import com.knowledgepixels.nanodash.repository.SpaceRepository;
import com.knowledgepixels.nanodash.template.ContextType;
import com.knowledgepixels.nanodash.template.Template;
import com.knowledgepixels.nanodash.template.UnificationException;
import net.trustyuri.TrustyUriUtils;
import org.apache.commons.codec.Charsets;
import org.apache.wicket.behavior.AttributeAppender;
import org.apache.wicket.markup.html.basic.Label;
import org.apache.wicket.markup.html.link.ExternalLink;
import org.apache.wicket.model.IModel;
import org.apache.wicket.model.Model;
import org.apache.wicket.validation.IValidatable;
import org.apache.wicket.validation.IValidator;
import org.apache.wicket.validation.Validatable;
import org.apache.wicket.validation.ValidationError;
import org.eclipse.rdf4j.common.net.ParsedIRI;
import org.eclipse.rdf4j.model.IRI;
import org.eclipse.rdf4j.model.Literal;
import org.eclipse.rdf4j.model.Value;
import org.eclipse.rdf4j.model.ValueFactory;
import org.eclipse.rdf4j.model.impl.SimpleValueFactory;
import org.eclipse.rdf4j.model.util.Literals;
import org.eclipse.rdf4j.model.vocabulary.XSD;
import org.nanopub.Nanopub;
import org.nanopub.NanopubUtils;
import org.nanopub.SimpleCreatorPattern;
import org.nanopub.vocabulary.NTEMPLATE;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

import java.net.URISyntaxException;
import java.net.URLEncoder;
import java.util.HashMap;
import java.util.Map;

/**
 * ReadonlyItem is a component that displays a read-only item in the form.
 */
public class ReadonlyItem extends AbstractContextComponent {

    private static final int LONG_LITERAL_LENGTH = 100;
    private static final Logger logger = LoggerFactory.getLogger(ReadonlyItem.class);
    private static final ValueFactory vf = SimpleValueFactory.getInstance();

    private IModel<String> model;
    private String prefix;
    private ExternalLink linkComp;
    private Label extraComp, languageComp, datatypeComp;
    private IModel<String> extraModel, languageModel, datatypeModel;
    private IRI iri;
    private RestrictedChoice restrictedChoice;
    private Label showMoreLabelLiteral, showMoreLabelHTML;
    private final Template template;

    /**
     * Constructor for ReadonlyItem.
     *
     * @param id              the component id
     * @param parentId        the parent id (e.g., "subj", "obj")
     * @param iriP            the IRI of the item
     * @param statementPartId the statement part ID
     * @param rg              the repetition group
     */
    public ReadonlyItem(String id, String parentId, final IRI iriP, IRI statementPartId, final RepetitionGroup rg) {
        super(id, rg.getContext());
        this.iri = iriP;
        template = context.getTemplate();
        model = (IModel<String>) context.getComponentModels().get(iri);
        if (model == null) {
            model = Model.of("");
            context.getComponentModels().put(iri, model);
        }
        String postfix = Utils.getUriPostfix(iri);
        if (context.hasParam(postfix)) {
            model.setObject(context.getParam(postfix));
        }

        final Map<String, String> foafNameMap;
        if (context.getExistingNanopub() == null) {
            foafNameMap = new HashMap<>();
        } else {
            foafNameMap = Utils.getFoafNameMap(context.getExistingNanopub());
        }

        prefix = template.getPrefix(iri);
        if (prefix == null) prefix = "";
        if (template.isRestrictedChoicePlaceholder(iri)) {
            restrictedChoice = new RestrictedChoice(iri, context);
        }
        add(new Label("prefix", new Model<String>() {

            @Override
            public String getObject() {
                String prefixLabel = template.getPrefixLabel(iri);
                String v = getFullValue();
                if (prefixLabel == null || IndividualAgent.isUser(v) || foafNameMap.containsKey(v)) {
                    return "";
                } else {
                    if (!prefixLabel.isEmpty() && parentId.equals("subj") && !prefixLabel.matches("https?://.*")) {
                        // Capitalize first letter of label if at subject position:
                        prefixLabel = prefixLabel.substring(0, 1).toUpperCase() + prefixLabel.substring(1);
                    }
                    return prefixLabel;
                }
            }

        }));

        linkComp = new ExternalLink("link", new Model<String>() {

            @Override
            public String getObject() {
                String obj = getFullValue();
                if (obj == null) return "";
                if (obj.equals(LocalUri.of("nanopub").stringValue())) {
                    if (context.getExistingNanopub() != null) {
                        obj = context.getExistingNanopub().getUri().stringValue();
                        return ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);
                    } else {
                        return "";
                    }
                } else if (obj.equals(LocalUri.of("assertion").stringValue())) {
                    if (context.getExistingNanopub() != null) {
                        obj = context.getExistingNanopub().getAssertionUri().stringValue();
                        return ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);
                    } else {
                        return "";
                    }
                } else if (obj.matches("https?://.+")) {
                    return NanodashLink.getPageUrl(obj);
                } else {
                    return "";
                }
            }

        }, new Model<String>() {

            @Override
            public String getObject() {
                String obj = getFullValue();
                if (obj != null && obj.matches("https?://.+")) {
                    IRI objIri = vf.createIRI(obj);
                    if (iri.equals(NTEMPLATE.CREATOR_PLACEHOLDER)) {
                        // TODO We might want to introduce a "(you)" flag here at some point
                        return User.getShortDisplayName(objIri);
                    } else if (isAssertionValue(objIri)) {
                        if (context.getType() == ContextType.ASSERTION) {
                            return "this assertion";
                        } else {
                            return "the assertion above";
                        }
                    } else if (isNanopubValue(objIri)) {
                        return "this nanopublication";
                    } else if (IndividualAgent.isUser(obj)) {
                        return User.getShortDisplayName(objIri);
                    } else if (foafNameMap.containsKey(obj)) {
                        return foafNameMap.get(obj);
                    }
                    Space space = SpaceRepository.get().findById(obj);
                    if (space != null) return space.getLabel();
                    space = SpaceRepository.get().findByAltId(obj);
                    if (space != null) return space.getLabel();
                    MaintainedResource mr = MaintainedResourceRepository.get().findById(obj);
                    if (mr != null) return mr.getLabel();
                    return getLabelString(objIri);
                }
                return obj;
            }

        });
        if (template.isIntroducedResource(iri) || template.isEmbeddedResource(iri)) {
            linkComp.add(AttributeAppender.append("class", "introduced"));
        }
        add(linkComp);
        add(new Label("description", new Model<String>() {

            @Override
            public String getObject() {
                String obj = getFullValue();
                if (obj != null && obj.matches("https?://.+")) {
                    IRI objIri = vf.createIRI(obj);
                    if (isAssertionValue(objIri)) {
                        return "This is the identifier for the assertion of this nanopublication.";
                    } else if (isNanopubValue(objIri)) {
                        return "This is the identifier for this whole nanopublication.";
                    } else if (context.isReadOnly() && obj.startsWith(context.getExistingNanopub().getUri().stringValue())) {
                        return "This is a local identifier minted within the nanopublication.";
                    }
                    String labelString = getLabelString(objIri);
                    String description = "";
                    if (labelString.contains(" - ")) description = labelString.replaceFirst("^.* - ", "");
                    return description;
                } else if (obj != null && obj.startsWith("\"")) {
                    return "(this is a literal)";
                }
                return "";
            }

        }));
        Model<String> uriModel = new Model<String>() {

            @Override
            public String getObject() {
                String obj = getFullValue();
                if (obj != null && obj.startsWith("\"")) return "";
                if (isAssertionValue(obj)) {
                    return getAssertionValue();
                } else if (isNanopubValue(obj)) {
                    return getNanopubValue();
                }
                return obj;
            }

        };
        add(Utils.getUriLink("uri", uriModel));
        extraModel = Model.of("");
        extraComp = new Label("extra", extraModel);
        extraComp.setVisible(false);
        add(extraComp);
        languageModel = Model.of("");
        languageComp = new Label("language", languageModel);
        languageComp.setVisible(false);
        add(languageComp);
        datatypeModel = Model.of("");
        datatypeComp = new Label("datatype", datatypeModel);
        datatypeComp.setVisible(false);
        add(datatypeComp);

        showMoreLabelLiteral = new Label("show-more-literal", "");
        add(showMoreLabelLiteral);
        showMoreLabelLiteral.setVisible(false);

        showMoreLabelHTML = new Label("show-more-html", "");
        add(showMoreLabelHTML);
        showMoreLabelHTML.setVisible(false);
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public void fillFinished() {
        String obj = getFullValue();
        if (obj != null) {
            if (isAssertionValue(obj)) {
                linkComp.add(new AttributeAppender("class", "this-assertion"));
            } else if (isNanopubValue(obj)) {
                linkComp.add(new AttributeAppender("class", "this-nanopub"));
            } else if (context.getExistingNanopub() != null) {
                Nanopub np = context.getExistingNanopub();
                if (NanopubUtils.getIntroducedIriIds(np).contains(obj) || NanopubUtils.getEmbeddedIriIds(np).contains(obj)) {
                    linkComp.add(AttributeAppender.append("class", "introduced"));
                }
            }
        }
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public void finalizeValues() {
    }

    private String getLabelString(IRI iri) {
        if (template.getLabel(iri) != null) {
            return template.getLabel(iri).replaceFirst(" - .*$", "");
        } else if (context.getLabel(iri) != null) {
            return context.getLabel(iri).replaceFirst(" - .*$", "");
        } else {
            return Utils.getShortNameFromURI(iri.stringValue());
        }
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public void removeFromContext() {
        // Nothing to be done here.
    }

    private String getFullValue() {
        String s = model.getObject();
        if (s == null) return null;
        if (template.isAutoEscapePlaceholder(iri)) {
            s = Utils.urlEncode(s);
        }
        if (!prefix.isEmpty()) {
            s = prefix + s;
        }
        return s;
    }

    private boolean isNanopubValue(Object obj) {
        if (obj == null) return false;
        if (obj.toString().equals(LocalUri.of("nanopub").stringValue())) return true;
        if (context.getExistingNanopub() == null) return false;
        return obj.toString().equals(context.getExistingNanopub().getUri().stringValue());
    }

    private String getNanopubValue() {
        if (context.getExistingNanopub() != null) {
            return context.getExistingNanopub().getUri().stringValue();
        } else {
            return LocalUri.of("nanopub").stringValue();
        }
    }

    private boolean isAssertionValue(Object obj) {
        if (obj == null) return false;
        if (obj.toString().equals(LocalUri.of("assertion").stringValue())) return true;
        if (context.getExistingNanopub() == null) return false;
        return obj.toString().equals(context.getExistingNanopub().getAssertionUri().stringValue());
    }

    private String getAssertionValue() {
        if (context.getExistingNanopub() != null) {
            return context.getExistingNanopub().getAssertionUri().stringValue();
        } else {
            return LocalUri.of("assertion").stringValue();
        }
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public boolean isUnifiableWith(Value v) {
        if (v == null) return true;
        if (v instanceof IRI) {
            String vs = v.stringValue();
            if (vs.equals(LocalUri.of("nanopub").stringValue())) {
                vs = getNanopubValue();
            } else if (vs.equals(LocalUri.of("assertion").stringValue())) {
                vs = getAssertionValue();
            }
            if (vs.startsWith(prefix)) vs = vs.substring(prefix.length());
//                        if (Utils.isLocalURI(vs)) vs = vs.replaceFirst("^" + LocalUri.PREFIX, "");
            if (template.isAutoEscapePlaceholder(iri)) {
                vs = Utils.urlDecode(vs);
            }
            Validatable<String> validatable = new Validatable<>(vs);
//                        if (template.isLocalResource(iri) && !Utils.isUriPostfix(vs)) {
//                                vs = Utils.getUriPostfix(vs);
//                        }
            new Validator().validate(validatable);
            if (!validatable.isValid()) {
                return false;
            }
            if (model.getObject().isEmpty()) {
                return true;
            }
            return vs.equals(model.getObject());
        } else if (v instanceof Literal vL) {
            if (template.getRegex(iri) != null && !v.stringValue().matches(template.getRegex(iri))) {
                return false;
            }
            String languagetag = template.getLanguageTag(iri);
            IRI datatype = template.getDatatype(iri);
            if (languagetag != null) {
                if (vL.getLanguage().isEmpty() || !Literals.normalizeLanguageTag(vL.getLanguage().get()).equals(languagetag)) {
                    return false;
                }
            } else if (datatype != null) {
                if (!vL.getDatatype().equals(datatype)) {
                    return false;
                }
            }
            if (linkComp.getDefaultModelObject() == null || linkComp.getDefaultModelObject().toString().isEmpty()) {
                return true;
            }
            return linkComp.getDefaultModelObject().equals("\"" + v.stringValue() + "\"");
        }
        return false;
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public void unifyWith(Value v) throws UnificationException {
        if (v == null) return;
        String vs = v.stringValue();
        if (!isUnifiableWith(v)) {
            logger.error("Cannot unify {}", v);
            throw new UnificationException(vs);
        }
        if (v instanceof IRI) {
            if (vs.equals(LocalUri.of("nanopub").stringValue())) {
                vs = getNanopubValue();
            } else if (vs.equals(LocalUri.of("assertion").stringValue())) {
                vs = getAssertionValue();
            }
            if (!prefix.isEmpty() && vs.startsWith(prefix)) {
                vs = vs.substring(prefix.length());
                // With read-only items, we don't need preliminary local identifiers:
//                        } else if (Utils.isLocalURI(vs)) {
//                                vs = vs.replaceFirst("^" + LocalUri.PREFIX, "");
//                        } else if (template.isLocalResource(iri) && !Utils.isUriPostfix(vs)) {
//                                vs = Utils.getUriPostfix(vs);
            }
            if (template.isAutoEscapePlaceholder(iri)) {
                vs = Utils.urlDecode(vs);
            }
            model.setObject(vs);
        } else if (v instanceof Literal vL) {
            if (vs.length() >= LONG_LITERAL_LENGTH) {
                linkComp.add(AttributeAppender.append("class", "long-literal collapsed"));
                showMoreLabelLiteral.setVisible(true);
            }
            if (vL.getLanguage().isPresent()) {
                model.setObject("\"" + vs + "\"");
                languageModel.setObject("(" + Literals.normalizeLanguageTag(vL.getLanguage().get()) + ")");
                languageComp.setVisible(true);
            } else if (!vL.getDatatype().equals(XSD.STRING)) {
                model.setObject("\"" + vs + "\"");
                datatypeModel.setObject("(" + vL.getDatatype().stringValue().replace(XSD.NAMESPACE, "xsd:") + ")");
                datatypeComp.setVisible(true);
            } else {
                model.setObject("\"" + vs + "\"");
            }
            if (Utils.looksLikeHtml(vs)) {
                linkComp.setVisible(false);
                extraModel.setObject(Utils.sanitizeHtml(vs));
                extraComp.setEscapeModelStrings(false);
                extraComp.setVisible(true);
                showMoreLabelLiteral.setVisible(false);
                showMoreLabelHTML.setVisible(true);
            }
        }
    }

    /**
     * Validator class for validating the input.
     */
    protected class Validator extends InvalidityHighlighting implements IValidator<String> {

        /**
         * Default constructor for Validator.
         */
        public Validator() {
        }

        @Override
        public void validate(IValidatable<String> s) {
            String sv = s.getValue();
            String p = prefix;
            if (template.isAutoEscapePlaceholder(iri)) {
                sv = Utils.urlEncode(sv);
            }
            if (sv.matches("https?://.+")) {
                p = "";
            } else if (sv.contains(":")) {
                s.error(new ValidationError("Colon character is not allowed in postfix"));
            }
            String iriString = p + sv;
            if (iriString.matches("[^:# ]+")) {
                p = LocalUri.PREFIX;
                iriString = p + sv;
            }
            try {
                ParsedIRI piri = new ParsedIRI(iriString);
                if (!piri.isAbsolute()) {
                    s.error(new ValidationError("IRI not well-formed"));
                }
                if (p.isEmpty() && !Utils.isLocalURI(sv) && !sv.matches("https?://.+")) {
                    s.error(new ValidationError("Only http(s):// IRIs are allowed here"));
                }
            } catch (URISyntaxException ex) {
                s.error(new ValidationError("IRI not well-formed"));
            }
            String regex = template.getRegex(iri);
            if (regex != null) {
                if (!sv.matches(regex)) {
                    s.error(new ValidationError("Value '" + sv + "' doesn't match the pattern '" + regex + "'"));
                }
            }
            if (template.isRestrictedChoicePlaceholder(iri)) {
                if (!restrictedChoice.getPossibleValues().contains(iriString) && !restrictedChoice.hasPossibleRefValues()) {
                    // not checking the possible ref values can overgenerate, but normally works
                    s.error(new ValidationError("Invalid choice"));
                }
            }
            if (template.isExternalUriPlaceholder(iri)) {
                if (!iriString.matches("https?://.+")) {
                    s.error(new ValidationError("Not an external IRI"));
                }
            }
            if (template.isTrustyUriPlaceholder(iri)) {
                if (!TrustyUriUtils.isPotentialTrustyUri(iriString)) {
                    s.error(new ValidationError("Not a trusty URI"));
                }
            }
            if (iri.equals(NTEMPLATE.CREATOR_PLACEHOLDER) && context.getExistingNanopub() != null) {
                boolean found = false;
                for (IRI creator : SimpleCreatorPattern.getCreators(context.getExistingNanopub())) {
                    if (creator.stringValue().equals(iriString)) {
                        found = true;
                        break;
                    }
                }
                if (!found) {
                    s.error(new ValidationError("Not a creator of nanopub"));
                }
            }
        }

    }

    /**
     * <p>toString.</p>
     *
     * @return a {@link java.lang.String} object
     */
    public String toString() {
        return "[read-only IRI item: " + iri + "]";
    }

}

1	package com.knowledgepixels.nanodash.component;
2
3	import com.knowledgepixels.nanodash.LocalUri;
4	import com.knowledgepixels.nanodash.RestrictedChoice;
5	import com.knowledgepixels.nanodash.domain.User;
6	import com.knowledgepixels.nanodash.Utils;
7	import com.knowledgepixels.nanodash.component.StatementItem.RepetitionGroup;
8	import com.knowledgepixels.nanodash.domain.IndividualAgent;
9	import com.knowledgepixels.nanodash.domain.MaintainedResource;
10	import com.knowledgepixels.nanodash.domain.Space;
11	import com.knowledgepixels.nanodash.page.ExplorePage;
12	import com.knowledgepixels.nanodash.repository.MaintainedResourceRepository;
13	import com.knowledgepixels.nanodash.repository.SpaceRepository;
14	import com.knowledgepixels.nanodash.template.ContextType;
15	import com.knowledgepixels.nanodash.template.Template;
16	import com.knowledgepixels.nanodash.template.UnificationException;
17	import net.trustyuri.TrustyUriUtils;
18	import org.apache.commons.codec.Charsets;
19	import org.apache.wicket.behavior.AttributeAppender;
20	import org.apache.wicket.markup.html.basic.Label;
21	import org.apache.wicket.markup.html.link.ExternalLink;
22	import org.apache.wicket.model.IModel;
23	import org.apache.wicket.model.Model;
24	import org.apache.wicket.validation.IValidatable;
25	import org.apache.wicket.validation.IValidator;
26	import org.apache.wicket.validation.Validatable;
27	import org.apache.wicket.validation.ValidationError;
28	import org.eclipse.rdf4j.common.net.ParsedIRI;
29	import org.eclipse.rdf4j.model.IRI;
30	import org.eclipse.rdf4j.model.Literal;
31	import org.eclipse.rdf4j.model.Value;
32	import org.eclipse.rdf4j.model.ValueFactory;
33	import org.eclipse.rdf4j.model.impl.SimpleValueFactory;
34	import org.eclipse.rdf4j.model.util.Literals;
35	import org.eclipse.rdf4j.model.vocabulary.XSD;
36	import org.nanopub.Nanopub;
37	import org.nanopub.NanopubUtils;
38	import org.nanopub.SimpleCreatorPattern;
39	import org.nanopub.vocabulary.NTEMPLATE;
40	import org.slf4j.Logger;
41	import org.slf4j.LoggerFactory;
42
43	import java.net.URISyntaxException;
44	import java.net.URLEncoder;
45	import java.util.HashMap;
46	import java.util.Map;
47
48	/**
49	* ReadonlyItem is a component that displays a read-only item in the form.
50	*/
51	public class ReadonlyItem extends AbstractContextComponent {
52
53	private static final int LONG_LITERAL_LENGTH = 100;
54	private static final Logger logger = LoggerFactory.getLogger(ReadonlyItem.class);	×
55	private static final ValueFactory vf = SimpleValueFactory.getInstance();	×
56
57	private IModel<String> model;
58	private String prefix;
59	private ExternalLink linkComp;
60	private Label extraComp, languageComp, datatypeComp;
61	private IModel<String> extraModel, languageModel, datatypeModel;
62	private IRI iri;
63	private RestrictedChoice restrictedChoice;
64	private Label showMoreLabelLiteral, showMoreLabelHTML;
65	private final Template template;
66
67	/**
68	* Constructor for ReadonlyItem.
69	*
70	* @param id the component id
71	* @param parentId the parent id (e.g., "subj", "obj")
72	* @param iriP the IRI of the item
73	* @param statementPartId the statement part ID
74	* @param rg the repetition group
75	*/
76	public ReadonlyItem(String id, String parentId, final IRI iriP, IRI statementPartId, final RepetitionGroup rg) {
77	super(id, rg.getContext());	×
78	this.iri = iriP;	×
79	template = context.getTemplate();	×
80	model = (IModel<String>) context.getComponentModels().get(iri);	×
81	if (model == null) {	×
82	model = Model.of("");	×
83	context.getComponentModels().put(iri, model);	×
84	}
85	String postfix = Utils.getUriPostfix(iri);	×
86	if (context.hasParam(postfix)) {	×
87	model.setObject(context.getParam(postfix));	×
88	}
89
90	final Map<String, String> foafNameMap;
91	if (context.getExistingNanopub() == null) {	×
92	foafNameMap = new HashMap<>();	×
93	} else {
94	foafNameMap = Utils.getFoafNameMap(context.getExistingNanopub());	×
95	}
96
97	prefix = template.getPrefix(iri);	×
98	if (prefix == null) prefix = "";	×
99	if (template.isRestrictedChoicePlaceholder(iri)) {	×
100	restrictedChoice = new RestrictedChoice(iri, context);	×
101	}
102	add(new Label("prefix", new Model<String>() {	×
103
104	@Override
105	public String getObject() {
106	String prefixLabel = template.getPrefixLabel(iri);	×
107	String v = getFullValue();	×
108	if (prefixLabel == null \|\| IndividualAgent.isUser(v) \|\| foafNameMap.containsKey(v)) {	×
109	return "";	×
110	} else {
111	if (!prefixLabel.isEmpty() && parentId.equals("subj") && !prefixLabel.matches("https?://.*")) {	×
112	// Capitalize first letter of label if at subject position:
113	prefixLabel = prefixLabel.substring(0, 1).toUpperCase() + prefixLabel.substring(1);	×
114	}
115	return prefixLabel;	×
116	}
117	}
118
119	}));
120
121	linkComp = new ExternalLink("link", new Model<String>() {	×
122
123	@Override
124	public String getObject() {
125	String obj = getFullValue();	×
126	if (obj == null) return "";	×
127	if (obj.equals(LocalUri.of("nanopub").stringValue())) {	×
128	if (context.getExistingNanopub() != null) {	×
129	obj = context.getExistingNanopub().getUri().stringValue();	×
130	return ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);	×
131	} else {
132	return "";	×
133	}
134	} else if (obj.equals(LocalUri.of("assertion").stringValue())) {	×
135	if (context.getExistingNanopub() != null) {	×
136	obj = context.getExistingNanopub().getAssertionUri().stringValue();	×
137	return ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);	×
138	} else {
139	return "";	×
140	}
141	} else if (obj.matches("https?://.+")) {	×
142	return NanodashLink.getPageUrl(obj);	×
143	} else {
144	return "";	×
145	}
146	}
147
148	}, new Model<String>() {	×
149
150	@Override
151	public String getObject() {
152	String obj = getFullValue();	×
153	if (obj != null && obj.matches("https?://.+")) {	×
154	IRI objIri = vf.createIRI(obj);	×
155	if (iri.equals(NTEMPLATE.CREATOR_PLACEHOLDER)) {	×
156	// TODO We might want to introduce a "(you)" flag here at some point
157	return User.getShortDisplayName(objIri);	×
158	} else if (isAssertionValue(objIri)) {	×
159	if (context.getType() == ContextType.ASSERTION) {	×
160	return "this assertion";	×
161	} else {
162	return "the assertion above";	×
163	}
164	} else if (isNanopubValue(objIri)) {	×
165	return "this nanopublication";	×
166	} else if (IndividualAgent.isUser(obj)) {	×
167	return User.getShortDisplayName(objIri);	×
168	} else if (foafNameMap.containsKey(obj)) {	×
169	return foafNameMap.get(obj);	×
170	}
171	Space space = SpaceRepository.get().findById(obj);	×
172	if (space != null) return space.getLabel();	×
173	space = SpaceRepository.get().findByAltId(obj);	×
174	if (space != null) return space.getLabel();	×
175	MaintainedResource mr = MaintainedResourceRepository.get().findById(obj);	×
176	if (mr != null) return mr.getLabel();	×
177	return getLabelString(objIri);	×
178	}
179	return obj;	×
180	}
181
182	});
183	if (template.isIntroducedResource(iri) \|\| template.isEmbeddedResource(iri)) {	×
184	linkComp.add(AttributeAppender.append("class", "introduced"));	×
185	}
186	add(linkComp);	×
187	add(new Label("description", new Model<String>() {	×
188
189	@Override
190	public String getObject() {
191	String obj = getFullValue();	×
192	if (obj != null && obj.matches("https?://.+")) {	×
193	IRI objIri = vf.createIRI(obj);	×
194	if (isAssertionValue(objIri)) {	×
195	return "This is the identifier for the assertion of this nanopublication.";	×
196	} else if (isNanopubValue(objIri)) {	×
197	return "This is the identifier for this whole nanopublication.";	×
198	} else if (context.isReadOnly() && obj.startsWith(context.getExistingNanopub().getUri().stringValue())) {	×
199	return "This is a local identifier minted within the nanopublication.";	×
200	}
201	String labelString = getLabelString(objIri);	×
202	String description = "";	×
203	if (labelString.contains(" - ")) description = labelString.replaceFirst("^.* - ", "");	×
204	return description;	×
205	} else if (obj != null && obj.startsWith("\"")) {	×
206	return "(this is a literal)";	×
207	}
208	return "";	×
209	}
210
211	}));
212	Model<String> uriModel = new Model<String>() {	×
213
214	@Override
215	public String getObject() {
216	String obj = getFullValue();	×
217	if (obj != null && obj.startsWith("\"")) return "";	×
218	if (isAssertionValue(obj)) {	×
219	return getAssertionValue();	×
220	} else if (isNanopubValue(obj)) {	×
221	return getNanopubValue();	×
222	}
223	return obj;	×
224	}
225
226	};
227	add(Utils.getUriLink("uri", uriModel));	×
228	extraModel = Model.of("");	×
229	extraComp = new Label("extra", extraModel);	×
230	extraComp.setVisible(false);	×
231	add(extraComp);	×
232	languageModel = Model.of("");	×
233	languageComp = new Label("language", languageModel);	×
234	languageComp.setVisible(false);	×
235	add(languageComp);	×
236	datatypeModel = Model.of("");	×
237	datatypeComp = new Label("datatype", datatypeModel);	×
238	datatypeComp.setVisible(false);	×
239	add(datatypeComp);	×
240
241	showMoreLabelLiteral = new Label("show-more-literal", "");	×
242	add(showMoreLabelLiteral);	×
243	showMoreLabelLiteral.setVisible(false);	×
244
245	showMoreLabelHTML = new Label("show-more-html", "");	×
246	add(showMoreLabelHTML);	×
247	showMoreLabelHTML.setVisible(false);	×
248	}	×
249
250	/**
251	* {@inheritDoc}
252	*/
253	@Override
254	public void fillFinished() {
255	String obj = getFullValue();	×
256	if (obj != null) {	×
257	if (isAssertionValue(obj)) {	×
258	linkComp.add(new AttributeAppender("class", "this-assertion"));	×
259	} else if (isNanopubValue(obj)) {	×
260	linkComp.add(new AttributeAppender("class", "this-nanopub"));	×
261	} else if (context.getExistingNanopub() != null) {	×
262	Nanopub np = context.getExistingNanopub();	×
263	if (NanopubUtils.getIntroducedIriIds(np).contains(obj) \|\| NanopubUtils.getEmbeddedIriIds(np).contains(obj)) {	×
264	linkComp.add(AttributeAppender.append("class", "introduced"));	×
265	}
266	}
267	}
268	}	×
269
270	/**
271	* {@inheritDoc}
272	*/
273	@Override
274	public void finalizeValues() {
275	}	×
276
277	private String getLabelString(IRI iri) {
278	if (template.getLabel(iri) != null) {	×
279	return template.getLabel(iri).replaceFirst(" - .*$", "");	×
280	} else if (context.getLabel(iri) != null) {	×
281	return context.getLabel(iri).replaceFirst(" - .*$", "");	×
282	} else {
283	return Utils.getShortNameFromURI(iri.stringValue());	×
284	}
285	}
286
287	/**
288	* {@inheritDoc}
289	*/
290	@Override
291	public void removeFromContext() {
292	// Nothing to be done here.
293	}	×
294
295	private String getFullValue() {
296	String s = model.getObject();	×
297	if (s == null) return null;	×
298	if (template.isAutoEscapePlaceholder(iri)) {	×
299	s = Utils.urlEncode(s);	×
300	}
301	if (!prefix.isEmpty()) {	×
302	s = prefix + s;	×
303	}
304	return s;	×
305	}
306
307	private boolean isNanopubValue(Object obj) {
308	if (obj == null) return false;	×
309	if (obj.toString().equals(LocalUri.of("nanopub").stringValue())) return true;	×
310	if (context.getExistingNanopub() == null) return false;	×
311	return obj.toString().equals(context.getExistingNanopub().getUri().stringValue());	×
312	}
313
314	private String getNanopubValue() {
315	if (context.getExistingNanopub() != null) {	×
316	return context.getExistingNanopub().getUri().stringValue();	×
317	} else {
318	return LocalUri.of("nanopub").stringValue();	×
319	}
320	}
321
322	private boolean isAssertionValue(Object obj) {
323	if (obj == null) return false;	×
324	if (obj.toString().equals(LocalUri.of("assertion").stringValue())) return true;	×
325	if (context.getExistingNanopub() == null) return false;	×
326	return obj.toString().equals(context.getExistingNanopub().getAssertionUri().stringValue());	×
327	}
328
329	private String getAssertionValue() {
330	if (context.getExistingNanopub() != null) {	×
331	return context.getExistingNanopub().getAssertionUri().stringValue();	×
332	} else {
333	return LocalUri.of("assertion").stringValue();	×
334	}
335	}
336
337	/**
338	* {@inheritDoc}
339	*/
340	@Override
341	public boolean isUnifiableWith(Value v) {
342	if (v == null) return true;	×
343	if (v instanceof IRI) {	×
344	String vs = v.stringValue();	×
345	if (vs.equals(LocalUri.of("nanopub").stringValue())) {	×
346	vs = getNanopubValue();	×
347	} else if (vs.equals(LocalUri.of("assertion").stringValue())) {	×
348	vs = getAssertionValue();	×
349	}
350	if (vs.startsWith(prefix)) vs = vs.substring(prefix.length());	×
351	// if (Utils.isLocalURI(vs)) vs = vs.replaceFirst("^" + LocalUri.PREFIX, "");
352	if (template.isAutoEscapePlaceholder(iri)) {	×
353	vs = Utils.urlDecode(vs);	×
354	}
355	Validatable<String> validatable = new Validatable<>(vs);	×
356	// if (template.isLocalResource(iri) && !Utils.isUriPostfix(vs)) {
357	// vs = Utils.getUriPostfix(vs);
358	// }
359	new Validator().validate(validatable);	×
360	if (!validatable.isValid()) {	×
361	return false;	×
362	}
363	if (model.getObject().isEmpty()) {	×
364	return true;	×
365	}
366	return vs.equals(model.getObject());	×
367	} else if (v instanceof Literal vL) {	×
368	if (template.getRegex(iri) != null && !v.stringValue().matches(template.getRegex(iri))) {	×
369	return false;	×
370	}
371	String languagetag = template.getLanguageTag(iri);	×
372	IRI datatype = template.getDatatype(iri);	×
373	if (languagetag != null) {	×
374	if (vL.getLanguage().isEmpty() \|\| !Literals.normalizeLanguageTag(vL.getLanguage().get()).equals(languagetag)) {	×
375	return false;	×
376	}
377	} else if (datatype != null) {	×
378	if (!vL.getDatatype().equals(datatype)) {	×
379	return false;	×
380	}
381	}
382	if (linkComp.getDefaultModelObject() == null \|\| linkComp.getDefaultModelObject().toString().isEmpty()) {	×
383	return true;	×
384	}
385	return linkComp.getDefaultModelObject().equals("\"" + v.stringValue() + "\"");	×
386	}
387	return false;	×
388	}
389
390	/**
391	* {@inheritDoc}
392	*/
393	@Override
394	public void unifyWith(Value v) throws UnificationException {
395	if (v == null) return;	×
396	String vs = v.stringValue();	×
397	if (!isUnifiableWith(v)) {	×
398	logger.error("Cannot unify {}", v);	×
399	throw new UnificationException(vs);	×
400	}
401	if (v instanceof IRI) {	×
402	if (vs.equals(LocalUri.of("nanopub").stringValue())) {	×
403	vs = getNanopubValue();	×
404	} else if (vs.equals(LocalUri.of("assertion").stringValue())) {	×
405	vs = getAssertionValue();	×
406	}
407	if (!prefix.isEmpty() && vs.startsWith(prefix)) {	×
408	vs = vs.substring(prefix.length());	×
409	// With read-only items, we don't need preliminary local identifiers:
410	// } else if (Utils.isLocalURI(vs)) {
411	// vs = vs.replaceFirst("^" + LocalUri.PREFIX, "");
412	// } else if (template.isLocalResource(iri) && !Utils.isUriPostfix(vs)) {
413	// vs = Utils.getUriPostfix(vs);
414	}
415	if (template.isAutoEscapePlaceholder(iri)) {	×
416	vs = Utils.urlDecode(vs);	×
417	}
418	model.setObject(vs);	×
419	} else if (v instanceof Literal vL) {	×
420	if (vs.length() >= LONG_LITERAL_LENGTH) {	×
421	linkComp.add(AttributeAppender.append("class", "long-literal collapsed"));	×
422	showMoreLabelLiteral.setVisible(true);	×
423	}
424	if (vL.getLanguage().isPresent()) {	×
425	model.setObject("\"" + vs + "\"");	×
426	languageModel.setObject("(" + Literals.normalizeLanguageTag(vL.getLanguage().get()) + ")");	×
427	languageComp.setVisible(true);	×
428	} else if (!vL.getDatatype().equals(XSD.STRING)) {	×
429	model.setObject("\"" + vs + "\"");	×
430	datatypeModel.setObject("(" + vL.getDatatype().stringValue().replace(XSD.NAMESPACE, "xsd:") + ")");	×
431	datatypeComp.setVisible(true);	×
432	} else {
433	model.setObject("\"" + vs + "\"");	×
434	}
435	if (Utils.looksLikeHtml(vs)) {	×
436	linkComp.setVisible(false);	×
437	extraModel.setObject(Utils.sanitizeHtml(vs));	×
438	extraComp.setEscapeModelStrings(false);	×
439	extraComp.setVisible(true);	×
440	showMoreLabelLiteral.setVisible(false);	×
441	showMoreLabelHTML.setVisible(true);	×
442	}
443	}
444	}	×
445
446	/**
447	* Validator class for validating the input.
448	*/
449	protected class Validator extends InvalidityHighlighting implements IValidator<String> {
450
451	/**
452	* Default constructor for Validator.
453	*/
454	public Validator() {	×
455	}	×
456
457	@Override
458	public void validate(IValidatable<String> s) {
459	String sv = s.getValue();	×
460	String p = prefix;	×
461	if (template.isAutoEscapePlaceholder(iri)) {	×
462	sv = Utils.urlEncode(sv);	×
463	}
464	if (sv.matches("https?://.+")) {	×
465	p = "";	×
466	} else if (sv.contains(":")) {	×
467	s.error(new ValidationError("Colon character is not allowed in postfix"));	×
468	}
469	String iriString = p + sv;	×
470	if (iriString.matches("[^:# ]+")) {	×
471	p = LocalUri.PREFIX;	×
472	iriString = p + sv;	×
473	}
474	try {
475	ParsedIRI piri = new ParsedIRI(iriString);	×
476	if (!piri.isAbsolute()) {	×
477	s.error(new ValidationError("IRI not well-formed"));	×
478	}
479	if (p.isEmpty() && !Utils.isLocalURI(sv) && !sv.matches("https?://.+")) {	×
480	s.error(new ValidationError("Only http(s):// IRIs are allowed here"));	×
481	}
482	} catch (URISyntaxException ex) {	×
483	s.error(new ValidationError("IRI not well-formed"));	×
484	}	×
485	String regex = template.getRegex(iri);	×
486	if (regex != null) {	×
487	if (!sv.matches(regex)) {	×
488	s.error(new ValidationError("Value '" + sv + "' doesn't match the pattern '" + regex + "'"));	×
489	}
490	}
491	if (template.isRestrictedChoicePlaceholder(iri)) {	×
492	if (!restrictedChoice.getPossibleValues().contains(iriString) && !restrictedChoice.hasPossibleRefValues()) {	×
493	// not checking the possible ref values can overgenerate, but normally works
494	s.error(new ValidationError("Invalid choice"));	×
495	}
496	}
497	if (template.isExternalUriPlaceholder(iri)) {	×
498	if (!iriString.matches("https?://.+")) {	×
499	s.error(new ValidationError("Not an external IRI"));	×
500	}
501	}
502	if (template.isTrustyUriPlaceholder(iri)) {	×
503	if (!TrustyUriUtils.isPotentialTrustyUri(iriString)) {	×
504	s.error(new ValidationError("Not a trusty URI"));	×
505	}
506	}
507	if (iri.equals(NTEMPLATE.CREATOR_PLACEHOLDER) && context.getExistingNanopub() != null) {	×
508	boolean found = false;	×
509	for (IRI creator : SimpleCreatorPattern.getCreators(context.getExistingNanopub())) {	×
510	if (creator.stringValue().equals(iriString)) {	×
511	found = true;	×
512	break;	×
513	}
514	}	×
515	if (!found) {	×
516	s.error(new ValidationError("Not a creator of nanopub"));	×
517	}
518	}
519	}	×
520
521	}
522
523	/**
524	* <p>toString.</p>
525	*
526	* @return a {@link java.lang.String} object
527	*/
528	public String toString() {
529	return "[read-only IRI item: " + iri + "]";	×
530	}
531
532	}

knowledgepixels / nanodash / 23429117751

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