23429117751

Committed 23 Mar 2026 08:56AM UTC coverage: 16.395% (-0.001%) from 16.396%

Build # 23429117751

Build Type

push

github

Committed by

tkuhn

Commit Message

fix: show space and maintained resource labels instead of URI suffixes when linked

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

Coverage Stats

746 of 5613 branches covered (13.29%)

Branch coverage included in aggregate %.

1895 of 10496 relevant lines covered (18.05%)

2.47 hits per line

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0.0

src/main/java/com/knowledgepixels/nanodash/component/IriItem.java

package com.knowledgepixels.nanodash.component;

import com.knowledgepixels.nanodash.LocalUri;
import com.knowledgepixels.nanodash.Utils;
import com.knowledgepixels.nanodash.component.StatementItem.RepetitionGroup;
import com.knowledgepixels.nanodash.domain.MaintainedResource;
import com.knowledgepixels.nanodash.domain.Space;
import com.knowledgepixels.nanodash.repository.MaintainedResourceRepository;
import com.knowledgepixels.nanodash.repository.SpaceRepository;
import com.knowledgepixels.nanodash.template.ContextType;
import com.knowledgepixels.nanodash.template.Template;
import com.knowledgepixels.nanodash.template.UnificationException;
import org.apache.wicket.behavior.AttributeAppender;
import org.apache.wicket.markup.html.basic.Label;
import org.apache.wicket.markup.html.link.ExternalLink;
import org.eclipse.rdf4j.model.IRI;
import org.eclipse.rdf4j.model.Value;
import org.eclipse.rdf4j.model.ValueFactory;
import org.eclipse.rdf4j.model.impl.SimpleValueFactory;
import org.eclipse.rdf4j.model.vocabulary.PROV;
import org.nanopub.vocabulary.NTEMPLATE;


/**
 * A panel that displays an IRI with a label and a link to explore it.
 */
public class IriItem extends AbstractContextComponent {

    private IRI iri;

    /**
     * Constructor for creating an IRI item with a given IRI and repetition group.
     *
     * @param id              the component ID
     * @param parentId        the parent ID (e.g., "subj", "obj")
     * @param iriP            the IRI to display
     * @param objectPosition  whether this is in the object position of a statement
     * @param statementPartId the ID of the statement part this IRI belongs to
     * @param rg              the repetition group context
     */
    public IriItem(String id, String parentId, IRI iriP, boolean objectPosition, IRI statementPartId, RepetitionGroup rg) {
        super(id, rg.getContext());
        this.iri = iriP;
        final Template template = context.getTemplate();
        String labelString = null;
        if (iri.equals(NTEMPLATE.ASSERTION_PLACEHOLDER)) {
            if (context.getType() == ContextType.ASSERTION) {
                labelString = "this assertion";
            } else {
                labelString = "the assertion above";
            }
        } else if (iri.equals(NTEMPLATE.NANOPUB_PLACEHOLDER)) {
            labelString = "this nanopublication";
        }
        if (template.getLabel(iri) != null) {
            labelString = template.getLabel(iri);
        } else if (iri.equals(PROV.WAS_ATTRIBUTED_TO)) {
            // temporary solution until we have full provenance graph support
            labelString = "is attributed to";
        } else if (labelString == null) {
            String iriString = iri.stringValue();
            Space space = SpaceRepository.get().findById(iriString);
            if (space != null) {
                labelString = space.getLabel();
            } else if (SpaceRepository.get().findByAltId(iriString) != null) {
                labelString = SpaceRepository.get().findByAltId(iriString).getLabel();
            } else if (MaintainedResourceRepository.get().findById(iriString) != null) {
                labelString = MaintainedResourceRepository.get().findById(iriString).getLabel();
            } else {
                labelString = Utils.getShortNameFromURI(iriString);
            }
        }
        if (!statementPartId.equals(template.getFirstOccurrence(iri))) {
            labelString = labelString.replaceFirst("^[aA]n? ", "the ");
        }
        if (!labelString.isEmpty() && parentId.equals("subj") && !labelString.matches("https?://.*")) {
            // Capitalize first letter of label if at subject position:
            labelString = labelString.substring(0, 1).toUpperCase() + labelString.substring(1);
        }
        labelString = labelString.replaceAll("%I%", "" + rg.getRepeatIndex());

        String iriString = iri.stringValue();
        String description = "";
        if (iri.equals(NTEMPLATE.ASSERTION_PLACEHOLDER)) {
            if (this.context.getExistingNanopub() != null) {
                iriString = this.context.getExistingNanopub().getAssertionUri().stringValue();
            } else {
                iriString = LocalUri.of("assertion").stringValue();
            }
            description = "This is the identifier for the assertion of this nanopublication.";
        } else if (iri.equals(NTEMPLATE.NANOPUB_PLACEHOLDER)) {
            if (this.context.getExistingNanopub() != null) {
                iriString = this.context.getExistingNanopub().getUri().stringValue();
            } else {
                iriString = LocalUri.of("nanopub").stringValue();
            }
            description = "This is the identifier for this whole nanopublication.";
        } else if (template.isLocalResource(iri)) {
            if (this.context.getExistingNanopub() == null) {
                iriString = iriString.replace(Utils.getUriPrefix(iriString), LocalUri.PREFIX);
            }
        }
        if (iriString.startsWith(context.getTemplateId())) {
            iriString = iriString.replace(context.getTemplateId(), "");
            if (this.context.getExistingNanopub() != null) {
                iriString = this.context.getExistingNanopub().getUri().stringValue() + iriString;
            }
            description = "This is a local identifier minted within the nanopublication.";
        }
        if (labelString.contains(" - ")) description = labelString.replaceFirst("^.* - ", "");
        add(new Label("description", description));
        add(Utils.getUriLink("uri", iriString));

        String href = null;
        if (Utils.isLocalURI(iriString)) {
            href = "";
        } else {
            href = NanodashLink.getPageUrl(iriString);
        }
        ExternalLink linkComp = new ExternalLink("link", href, labelString.replaceFirst(" - .*$", ""));
        if (iri.equals(NTEMPLATE.ASSERTION_PLACEHOLDER)) {
            linkComp.add(new AttributeAppender("class", " this-assertion "));
            iri = LocalUri.of("assertion");
        } else if (iri.equals(NTEMPLATE.NANOPUB_PLACEHOLDER)) {
            linkComp.add(new AttributeAppender("class", " this-nanopub "));
            iri = LocalUri.of("nanopub");
        }
        add(linkComp);
        if (template.isIntroducedResource(iri) || template.isEmbeddedResource(iri)) {
            linkComp.add(AttributeAppender.append("class", "introduced"));
        }
    }

    private static ValueFactory vf = SimpleValueFactory.getInstance();

    /**
     * {@inheritDoc}
     */
    @Override
    public void removeFromContext() {
        // Nothing to be done here.
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public boolean isUnifiableWith(Value v) {
        if (!(v instanceof IRI)) return false;
        // TODO: Check that template URIs don't have regex characters:
        String iriS = iri.stringValue().replaceFirst("^" + context.getTemplateId() + "[#/]?", LocalUri.PREFIX);
        if (context.isReadOnly()) {
            return iriS.equals(v.stringValue().replaceFirst("^" + context.getExistingNanopub().getUri() + "[#/]?", LocalUri.PREFIX));
        } else {
            return iriS.equals(v.stringValue());
        }
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public void unifyWith(Value v) throws UnificationException {
        if (!isUnifiableWith(v)) throw new UnificationException(v.stringValue());
        // Nothing left to be done here.
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public void fillFinished() {
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public void finalizeValues() {
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public String toString() {
        return "[IRI item: " + iri + "]";
    }

}

1	package com.knowledgepixels.nanodash.component;
2
3	import com.knowledgepixels.nanodash.LocalUri;
4	import com.knowledgepixels.nanodash.Utils;
5	import com.knowledgepixels.nanodash.component.StatementItem.RepetitionGroup;
6	import com.knowledgepixels.nanodash.domain.MaintainedResource;
7	import com.knowledgepixels.nanodash.domain.Space;
8	import com.knowledgepixels.nanodash.repository.MaintainedResourceRepository;
9	import com.knowledgepixels.nanodash.repository.SpaceRepository;
10	import com.knowledgepixels.nanodash.template.ContextType;
11	import com.knowledgepixels.nanodash.template.Template;
12	import com.knowledgepixels.nanodash.template.UnificationException;
13	import org.apache.wicket.behavior.AttributeAppender;
14	import org.apache.wicket.markup.html.basic.Label;
15	import org.apache.wicket.markup.html.link.ExternalLink;
16	import org.eclipse.rdf4j.model.IRI;
17	import org.eclipse.rdf4j.model.Value;
18	import org.eclipse.rdf4j.model.ValueFactory;
19	import org.eclipse.rdf4j.model.impl.SimpleValueFactory;
20	import org.eclipse.rdf4j.model.vocabulary.PROV;
21	import org.nanopub.vocabulary.NTEMPLATE;
22
23
24	/**
25	* A panel that displays an IRI with a label and a link to explore it.
26	*/
27	public class IriItem extends AbstractContextComponent {
28
29	private IRI iri;
30
31	/**
32	* Constructor for creating an IRI item with a given IRI and repetition group.
33	*
34	* @param id the component ID
35	* @param parentId the parent ID (e.g., "subj", "obj")
36	* @param iriP the IRI to display
37	* @param objectPosition whether this is in the object position of a statement
38	* @param statementPartId the ID of the statement part this IRI belongs to
39	* @param rg the repetition group context
40	*/
41	public IriItem(String id, String parentId, IRI iriP, boolean objectPosition, IRI statementPartId, RepetitionGroup rg) {
42	super(id, rg.getContext());	×
43	this.iri = iriP;	×
44	final Template template = context.getTemplate();	×
45	String labelString = null;	×
46	if (iri.equals(NTEMPLATE.ASSERTION_PLACEHOLDER)) {	×
47	if (context.getType() == ContextType.ASSERTION) {	×
48	labelString = "this assertion";	×
49	} else {
50	labelString = "the assertion above";	×
51	}
52	} else if (iri.equals(NTEMPLATE.NANOPUB_PLACEHOLDER)) {	×
53	labelString = "this nanopublication";	×
54	}
55	if (template.getLabel(iri) != null) {	×
56	labelString = template.getLabel(iri);	×
57	} else if (iri.equals(PROV.WAS_ATTRIBUTED_TO)) {	×
58	// temporary solution until we have full provenance graph support
59	labelString = "is attributed to";	×
60	} else if (labelString == null) {	×
61	String iriString = iri.stringValue();	×
62	Space space = SpaceRepository.get().findById(iriString);	×
63	if (space != null) {	×
64	labelString = space.getLabel();	×
65	} else if (SpaceRepository.get().findByAltId(iriString) != null) {	×
66	labelString = SpaceRepository.get().findByAltId(iriString).getLabel();	×
67	} else if (MaintainedResourceRepository.get().findById(iriString) != null) {	×
68	labelString = MaintainedResourceRepository.get().findById(iriString).getLabel();	×
69	} else {
70	labelString = Utils.getShortNameFromURI(iriString);	×
71	}
72	}
73	if (!statementPartId.equals(template.getFirstOccurrence(iri))) {	×
74	labelString = labelString.replaceFirst("^[aA]n? ", "the ");	×
75	}
76	if (!labelString.isEmpty() && parentId.equals("subj") && !labelString.matches("https?://.*")) {	×
77	// Capitalize first letter of label if at subject position:
78	labelString = labelString.substring(0, 1).toUpperCase() + labelString.substring(1);	×
79	}
80	labelString = labelString.replaceAll("%I%", "" + rg.getRepeatIndex());	×
81
82	String iriString = iri.stringValue();	×
83	String description = "";	×
84	if (iri.equals(NTEMPLATE.ASSERTION_PLACEHOLDER)) {	×
85	if (this.context.getExistingNanopub() != null) {	×
86	iriString = this.context.getExistingNanopub().getAssertionUri().stringValue();	×
87	} else {
88	iriString = LocalUri.of("assertion").stringValue();	×
89	}
90	description = "This is the identifier for the assertion of this nanopublication.";	×
91	} else if (iri.equals(NTEMPLATE.NANOPUB_PLACEHOLDER)) {	×
92	if (this.context.getExistingNanopub() != null) {	×
93	iriString = this.context.getExistingNanopub().getUri().stringValue();	×
94	} else {
95	iriString = LocalUri.of("nanopub").stringValue();	×
96	}
97	description = "This is the identifier for this whole nanopublication.";	×
98	} else if (template.isLocalResource(iri)) {	×
99	if (this.context.getExistingNanopub() == null) {	×
100	iriString = iriString.replace(Utils.getUriPrefix(iriString), LocalUri.PREFIX);	×
101	}
102	}
103	if (iriString.startsWith(context.getTemplateId())) {	×
104	iriString = iriString.replace(context.getTemplateId(), "");	×
105	if (this.context.getExistingNanopub() != null) {	×
106	iriString = this.context.getExistingNanopub().getUri().stringValue() + iriString;	×
107	}
108	description = "This is a local identifier minted within the nanopublication.";	×
109	}
110	if (labelString.contains(" - ")) description = labelString.replaceFirst("^.* - ", "");	×
111	add(new Label("description", description));	×
112	add(Utils.getUriLink("uri", iriString));	×
113
114	String href = null;	×
115	if (Utils.isLocalURI(iriString)) {	×
116	href = "";	×
117	} else {
118	href = NanodashLink.getPageUrl(iriString);	×
119	}
120	ExternalLink linkComp = new ExternalLink("link", href, labelString.replaceFirst(" - .*$", ""));	×
121	if (iri.equals(NTEMPLATE.ASSERTION_PLACEHOLDER)) {	×
122	linkComp.add(new AttributeAppender("class", " this-assertion "));	×
123	iri = LocalUri.of("assertion");	×
124	} else if (iri.equals(NTEMPLATE.NANOPUB_PLACEHOLDER)) {	×
125	linkComp.add(new AttributeAppender("class", " this-nanopub "));	×
126	iri = LocalUri.of("nanopub");	×
127	}
128	add(linkComp);	×
129	if (template.isIntroducedResource(iri) \|\| template.isEmbeddedResource(iri)) {	×
130	linkComp.add(AttributeAppender.append("class", "introduced"));	×
131	}
132	}	×
133
134	private static ValueFactory vf = SimpleValueFactory.getInstance();	×
135
136	/**
137	* {@inheritDoc}
138	*/
139	@Override
140	public void removeFromContext() {
141	// Nothing to be done here.
142	}	×
143
144	/**
145	* {@inheritDoc}
146	*/
147	@Override
148	public boolean isUnifiableWith(Value v) {
149	if (!(v instanceof IRI)) return false;	×
150	// TODO: Check that template URIs don't have regex characters:
151	String iriS = iri.stringValue().replaceFirst("^" + context.getTemplateId() + "[#/]?", LocalUri.PREFIX);	×
152	if (context.isReadOnly()) {	×
153	return iriS.equals(v.stringValue().replaceFirst("^" + context.getExistingNanopub().getUri() + "[#/]?", LocalUri.PREFIX));	×
154	} else {
155	return iriS.equals(v.stringValue());	×
156	}
157	}
158
159	/**
160	* {@inheritDoc}
161	*/
162	@Override
163	public void unifyWith(Value v) throws UnificationException {
164	if (!isUnifiableWith(v)) throw new UnificationException(v.stringValue());	×
165	// Nothing left to be done here.
166	}	×
167
168	/**
169	* {@inheritDoc}
170	*/
171	@Override
172	public void fillFinished() {
173	}	×
174
175	/**
176	* {@inheritDoc}
177	*/
178	@Override
179	public void finalizeValues() {
180	}	×
181
182	/**
183	* {@inheritDoc}
184	*/
185	@Override
186	public String toString() {
187	return "[IRI item: " + iri + "]";	×
188	}
189
190	}

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