22618039211

Committed 03 Mar 2026 10:05AM UTC coverage: 16.058% (+0.2%) from 15.884%

Build # 22618039211

Build Type

Pull #365

github

Committed by

web-flow

Commit Message

Merge 1e7e700f0 into a8c4b4a77

Pull Request Pull Request #365: Refactor of `ResourceWithProfile` and related classes

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src/main/java/com/knowledgepixels/nanodash/page/ResourcePartPage.java

package com.knowledgepixels.nanodash.page;

import com.knowledgepixels.nanodash.*;
import com.knowledgepixels.nanodash.component.ResultComponent;
import com.knowledgepixels.nanodash.component.SourceNanopub;
import com.knowledgepixels.nanodash.component.TitleBar;
import com.knowledgepixels.nanodash.component.ViewList;
import com.knowledgepixels.nanodash.domain.AbstractResourceWithProfile;
import com.knowledgepixels.nanodash.domain.IndividualAgent;
import com.knowledgepixels.nanodash.domain.MaintainedResource;
import com.knowledgepixels.nanodash.domain.User;
import com.knowledgepixels.nanodash.repository.MaintainedResourceRepository;
import com.knowledgepixels.nanodash.repository.SpaceRepository;
import org.apache.wicket.Component;
import org.apache.wicket.extensions.ajax.markup.html.AjaxLazyLoadPanel;
import org.apache.wicket.markup.html.basic.Label;
import org.apache.wicket.markup.html.link.AbstractLink;
import org.apache.wicket.markup.html.link.BookmarkablePageLink;
import org.apache.wicket.model.Model;
import org.apache.wicket.request.mapper.parameter.PageParameters;
import org.eclipse.rdf4j.model.IRI;
import org.eclipse.rdf4j.model.Statement;
import org.eclipse.rdf4j.model.util.Values;
import org.eclipse.rdf4j.model.vocabulary.DCTERMS;
import org.eclipse.rdf4j.model.vocabulary.RDF;
import org.eclipse.rdf4j.model.vocabulary.RDFS;
import org.eclipse.rdf4j.model.vocabulary.SKOS;
import org.nanopub.Nanopub;
import org.nanopub.extra.services.ApiResponse;
import org.nanopub.extra.services.QueryRef;

import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Set;

/**
 * This class represents a page for a resource part in the context of a maintained resource, space, or user.
 */
public class ResourcePartPage extends NanodashPage {

    /**
     * The mount path for this page.
     */
    public static final String MOUNT_PATH = "/part";

    /**
     * {@inheritDoc}
     */
    @Override
    public String getMountPath() {
        return MOUNT_PATH;
    }

    /**
     * Resource with profile (Space or MaintainedResource) object with the data shown on this page.
     */
    private AbstractResourceWithProfile resourceWithProfile;

    public ResourcePartPage(final PageParameters parameters) {
        super(parameters);

        final String id = parameters.get("id").toString();
        final String contextId = parameters.get("context").toString();
        final String nanopubId;
        String label = id.replaceFirst("^.*[#/]([^#/]+)$", "$1");
        String description = null;
        Set<IRI> classes = new HashSet<>();

        resourceWithProfile = MaintainedResourceRepository.get().findById(contextId);
        if (resourceWithProfile == null) {
            if (SpaceRepository.get().findById(contextId) != null) {
                resourceWithProfile = SpaceRepository.get().findById(contextId);
            } else if (IndividualAgent.isUser(contextId)) {
                resourceWithProfile = IndividualAgent.get(contextId);
            } else {
                throw new IllegalArgumentException("Not a resource, space, or user: " + contextId);
            }
        }

        QueryRef getDefQuery = new QueryRef(QueryApiAccess.GET_TERM_DEFINITIONS, "term", id);
        if (resourceWithProfile.getSpace() != null) {
            for (IRI userIri : resourceWithProfile.getSpace().getUsers()) {
                for (String pubkey : User.getUserData().getPubkeyhashes(userIri, true)) {
                    getDefQuery.getParams().put("pubkey", pubkey);
                }
            }
        } else {
            for (String pubkey : User.getUserData().getPubkeyhashes(Utils.vf.createIRI(contextId), true)) {
                getDefQuery.getParams().put("pubkey", pubkey);
            }
        }

        ApiResponse getDefResp = ApiCache.retrieveResponseSync(getDefQuery, false);
        if (getDefResp != null && !getDefResp.getData().isEmpty()) {
            nanopubId = getDefResp.getData().iterator().next().get("np");

            Nanopub nanopub = Utils.getAsNanopub(nanopubId);
            for (Statement st : nanopub.getAssertion()) {
                if (!st.getSubject().stringValue().equals(id)) {
                    continue;
                }
                if (st.getPredicate().equals(RDFS.LABEL)) {
                    label = st.getObject().stringValue();
                }
                if (st.getPredicate().equals(SKOS.DEFINITION) || st.getPredicate().equals(DCTERMS.DESCRIPTION) || st.getPredicate().equals(RDFS.COMMENT)) {
                    description = st.getObject().stringValue();
                }
                if (st.getPredicate().equals(RDF.TYPE) && st.getObject() instanceof IRI objIri) {
                    classes.add(objIri);
                }
            }
        } else {
            nanopubId = null;
        }
//        if (getDefResp == null || getDefResp.getData().isEmpty()) {
//            throw new RestartResponseException(ExplorePage.class, parameters);
//        }

        if (description != null) {
            add(new Label("description", description));
        } else {
            add(new Label("description").setVisible(false));
        }

        List<NanodashPageRef> breadCrumb;
        if (resourceWithProfile.getSpace() != null) {
            List<AbstractResourceWithProfile> superSpaces = resourceWithProfile.getSpace().getAllSuperSpacesUntilRoot();
            if (resourceWithProfile instanceof MaintainedResource) {
                superSpaces.add(resourceWithProfile.getSpace());
            }
            superSpaces.add(resourceWithProfile);
            breadCrumb = new ArrayList<>(superSpaces.stream().map(ss -> new NanodashPageRef(SpacePage.class, new PageParameters().add("id", ss.getId()), ss.getLabel())).toList());
        } else {
            breadCrumb = new ArrayList<>();
            breadCrumb.add(new NanodashPageRef(UserPage.class, new PageParameters().add("id", contextId), resourceWithProfile.getLabel()));
        }
        breadCrumb.add(new NanodashPageRef(ResourcePartPage.class, new PageParameters().add("id", id).add("context", contextId).add("label", label), label));
        NanodashPageRef[] breadCrumbArray = breadCrumb.toArray(new NanodashPageRef[0]);
        add(new TitleBar("titlebar", this, null,
                breadCrumbArray
        ));

        add(new Label("pagetitle", label + " (resource part) | nanodash"));
        add(new Label("name", label));
        add(new BookmarkablePageLink<Void>("id", ExplorePage.class, parameters.set("label", label)).setBody(Model.of(id)));
        add(new SourceNanopub("np", nanopubId == null ? Values.iri(id) : Values.iri(nanopubId)));

        // TODO Improve this code, e.g. make Space a subclass of MaintainedResource or otherwise refactor:
        // we now use the ProfileResource abstraction, but the code still has to be imprved
        if (resourceWithProfile != null) {
            final List<AbstractLink> viewButtons = new ArrayList<>();
            AbstractLink addViewButton = new BookmarkablePageLink<NanodashPage>("button", PublishPage.class, new PageParameters()
                    .set("template", "https://w3id.org/np/RAZg-r7oQjVZ3Ewy7pUzd9eINl6fCa3HGclTsDeRag5to")
                    .set("template-version", "latest")
                    .set("param_resource", resourceWithProfile.getId())
                    .set("context", resourceWithProfile.getId())
                    .set("part", id)
            );
            addViewButton.setBody(Model.of("+ view display"));
            viewButtons.add(addViewButton);

            final String nanopubRef = nanopubId == null ? "x:" : nanopubId;
            final AbstractResourceWithProfile footerResource = resourceWithProfile.getSpace() != null ? resourceWithProfile.getSpace() : resourceWithProfile;
            if (resourceWithProfile.isDataInitialized()) {
                add(new ViewList("views", resourceWithProfile, id, nanopubRef, classes, footerResource, viewButtons));
            } else {
                add(new AjaxLazyLoadPanel<Component>("views") {

                    @Override
                    public Component getLazyLoadComponent(String markupId) {
                        return new ViewList(markupId, resourceWithProfile, id, nanopubRef, classes, footerResource, viewButtons);
                    }

                    @Override
                    protected boolean isContentReady() {
                        return resourceWithProfile.isDataInitialized();
                    }

                    @Override
                    public Component getLoadingComponent(String id) {
                        return new Label(id, "<div class=\"row-section\"><div class=\"col-12\">" + ResultComponent.getWaitIconHtml() + "</div></div>").setEscapeModelStrings(false);
                    }

                });
            }
        } else {
            // TODO Ugly code duplication (see above):

            final List<AbstractLink> viewButtons = new ArrayList<>();
            AbstractLink addViewButton = new BookmarkablePageLink<NanodashPage>("button", PublishPage.class, new PageParameters()
                    .set("template", "https://w3id.org/np/RAZg-r7oQjVZ3Ewy7pUzd9eINl6fCa3HGclTsDeRag5to")
                    .set("template-version", "latest")
                    .set("param_resource", resourceWithProfile.getSpace().getId())
                    .set("context", resourceWithProfile.getSpace().getId())
                    .set("part", id)
            );
            addViewButton.setBody(Model.of("+ view display"));
            viewButtons.add(addViewButton);

            if (resourceWithProfile.getSpace().isDataInitialized()) {
                add(new ViewList("views", resourceWithProfile.getSpace(), id, nanopubId, classes, resourceWithProfile.getSpace(), viewButtons));
            } else {
                add(new AjaxLazyLoadPanel<Component>("views") {

                    @Override
                    public Component getLazyLoadComponent(String markupId) {
                        return new ViewList(markupId, resourceWithProfile.getSpace(), id, nanopubId, classes, resourceWithProfile.getSpace(), viewButtons);
                    }

                    @Override
                    protected boolean isContentReady() {
                        return resourceWithProfile.getSpace().isDataInitialized();
                    }

                    @Override
                    public Component getLoadingComponent(String id) {
                        return new Label(id, "<div class=\"row-section\"><div class=\"col-12\">" + ResultComponent.getWaitIconHtml() + "</div></div>").setEscapeModelStrings(false);
                    }

                });
            }
        }
    }

    /**
     * Checks if auto-refresh is enabled for this page.
     *
     * @return true if auto-refresh is enabled, false otherwise
     */
    protected boolean hasAutoRefreshEnabled() {
        return true;
    }

}

1	package com.knowledgepixels.nanodash.page;
2
3	import com.knowledgepixels.nanodash.*;
4	import com.knowledgepixels.nanodash.component.ResultComponent;
5	import com.knowledgepixels.nanodash.component.SourceNanopub;
6	import com.knowledgepixels.nanodash.component.TitleBar;
7	import com.knowledgepixels.nanodash.component.ViewList;
8	import com.knowledgepixels.nanodash.domain.AbstractResourceWithProfile;
9	import com.knowledgepixels.nanodash.domain.IndividualAgent;
10	import com.knowledgepixels.nanodash.domain.MaintainedResource;
11	import com.knowledgepixels.nanodash.domain.User;
12	import com.knowledgepixels.nanodash.repository.MaintainedResourceRepository;
13	import com.knowledgepixels.nanodash.repository.SpaceRepository;
14	import org.apache.wicket.Component;
15	import org.apache.wicket.extensions.ajax.markup.html.AjaxLazyLoadPanel;
16	import org.apache.wicket.markup.html.basic.Label;
17	import org.apache.wicket.markup.html.link.AbstractLink;
18	import org.apache.wicket.markup.html.link.BookmarkablePageLink;
19	import org.apache.wicket.model.Model;
20	import org.apache.wicket.request.mapper.parameter.PageParameters;
21	import org.eclipse.rdf4j.model.IRI;
22	import org.eclipse.rdf4j.model.Statement;
23	import org.eclipse.rdf4j.model.util.Values;
24	import org.eclipse.rdf4j.model.vocabulary.DCTERMS;
25	import org.eclipse.rdf4j.model.vocabulary.RDF;
26	import org.eclipse.rdf4j.model.vocabulary.RDFS;
27	import org.eclipse.rdf4j.model.vocabulary.SKOS;
28	import org.nanopub.Nanopub;
29	import org.nanopub.extra.services.ApiResponse;
30	import org.nanopub.extra.services.QueryRef;
31
32	import java.util.ArrayList;
33	import java.util.HashSet;
34	import java.util.List;
35	import java.util.Set;
36
37	/**
38	* This class represents a page for a resource part in the context of a maintained resource, space, or user.
39	*/
40	public class ResourcePartPage extends NanodashPage {
41
42	/**
43	* The mount path for this page.
44	*/
45	public static final String MOUNT_PATH = "/part";
46
47	/**
48	* {@inheritDoc}
49	*/
50	@Override
51	public String getMountPath() {
52	return MOUNT_PATH;	×
53	}
54
55	/**
56	* Resource with profile (Space or MaintainedResource) object with the data shown on this page.
57	*/
58	private AbstractResourceWithProfile resourceWithProfile;
59
60	public ResourcePartPage(final PageParameters parameters) {
61	super(parameters);	×
62
63	final String id = parameters.get("id").toString();	×
64	final String contextId = parameters.get("context").toString();	×
65	final String nanopubId;
66	String label = id.replaceFirst("^.*[#/]([^#/]+)$", "$1");	×
67	String description = null;	×
68	Set<IRI> classes = new HashSet<>();	×
69
70	resourceWithProfile = MaintainedResourceRepository.get().findById(contextId);	×
71	if (resourceWithProfile == null) {	×
72	if (SpaceRepository.get().findById(contextId) != null) {	×
73	resourceWithProfile = SpaceRepository.get().findById(contextId);	×
74	} else if (IndividualAgent.isUser(contextId)) {	×
75	resourceWithProfile = IndividualAgent.get(contextId);	×
76	} else {
77	throw new IllegalArgumentException("Not a resource, space, or user: " + contextId);	×
78	}
79	}
80
81	QueryRef getDefQuery = new QueryRef(QueryApiAccess.GET_TERM_DEFINITIONS, "term", id);	×
82	if (resourceWithProfile.getSpace() != null) {	×
83	for (IRI userIri : resourceWithProfile.getSpace().getUsers()) {	×
84	for (String pubkey : User.getUserData().getPubkeyhashes(userIri, true)) {	×
85	getDefQuery.getParams().put("pubkey", pubkey);	×
86	}	×
87	}	×
88	} else {
89	for (String pubkey : User.getUserData().getPubkeyhashes(Utils.vf.createIRI(contextId), true)) {	×
90	getDefQuery.getParams().put("pubkey", pubkey);	×
91	}	×
92	}
93
94	ApiResponse getDefResp = ApiCache.retrieveResponseSync(getDefQuery, false);	×
95	if (getDefResp != null && !getDefResp.getData().isEmpty()) {	×
96	nanopubId = getDefResp.getData().iterator().next().get("np");	×
97
98	Nanopub nanopub = Utils.getAsNanopub(nanopubId);	×
99	for (Statement st : nanopub.getAssertion()) {	×
100	if (!st.getSubject().stringValue().equals(id)) {	×
101	continue;	×
102	}
103	if (st.getPredicate().equals(RDFS.LABEL)) {	×
104	label = st.getObject().stringValue();	×
105	}
106	if (st.getPredicate().equals(SKOS.DEFINITION) \|\| st.getPredicate().equals(DCTERMS.DESCRIPTION) \|\| st.getPredicate().equals(RDFS.COMMENT)) {	×
107	description = st.getObject().stringValue();	×
108	}
109	if (st.getPredicate().equals(RDF.TYPE) && st.getObject() instanceof IRI objIri) {	×
110	classes.add(objIri);	×
111	}
112	}	×
113	} else {	×
114	nanopubId = null;	×
115	}
116	// if (getDefResp == null \|\| getDefResp.getData().isEmpty()) {
117	// throw new RestartResponseException(ExplorePage.class, parameters);
118	// }
119
120	if (description != null) {	×
121	add(new Label("description", description));	×
122	} else {
123	add(new Label("description").setVisible(false));	×
124	}
125
126	List<NanodashPageRef> breadCrumb;
127	if (resourceWithProfile.getSpace() != null) {	×
128	List<AbstractResourceWithProfile> superSpaces = resourceWithProfile.getSpace().getAllSuperSpacesUntilRoot();	×
129	if (resourceWithProfile instanceof MaintainedResource) {	×
130	superSpaces.add(resourceWithProfile.getSpace());	×
131	}
132	superSpaces.add(resourceWithProfile);	×
133	breadCrumb = new ArrayList<>(superSpaces.stream().map(ss -> new NanodashPageRef(SpacePage.class, new PageParameters().add("id", ss.getId()), ss.getLabel())).toList());	×
134	} else {	×
135	breadCrumb = new ArrayList<>();	×
136	breadCrumb.add(new NanodashPageRef(UserPage.class, new PageParameters().add("id", contextId), resourceWithProfile.getLabel()));	×
137	}
138	breadCrumb.add(new NanodashPageRef(ResourcePartPage.class, new PageParameters().add("id", id).add("context", contextId).add("label", label), label));	×
139	NanodashPageRef[] breadCrumbArray = breadCrumb.toArray(new NanodashPageRef[0]);	×
140	add(new TitleBar("titlebar", this, null,	×
141	breadCrumbArray
142	));
143
144	add(new Label("pagetitle", label + " (resource part) \| nanodash"));	×
145	add(new Label("name", label));	×
146	add(new BookmarkablePageLink<Void>("id", ExplorePage.class, parameters.set("label", label)).setBody(Model.of(id)));	×
147	add(new SourceNanopub("np", nanopubId == null ? Values.iri(id) : Values.iri(nanopubId)));	×
148
149	// TODO Improve this code, e.g. make Space a subclass of MaintainedResource or otherwise refactor:
150	// we now use the ProfileResource abstraction, but the code still has to be imprved
151	if (resourceWithProfile != null) {	×
152	final List<AbstractLink> viewButtons = new ArrayList<>();	×
153	AbstractLink addViewButton = new BookmarkablePageLink<NanodashPage>("button", PublishPage.class, new PageParameters()	×
154	.set("template", "https://w3id.org/np/RAZg-r7oQjVZ3Ewy7pUzd9eINl6fCa3HGclTsDeRag5to")	×
155	.set("template-version", "latest")	×
156	.set("param_resource", resourceWithProfile.getId())	×
157	.set("context", resourceWithProfile.getId())	×
158	.set("part", id)	×
159	);
160	addViewButton.setBody(Model.of("+ view display"));	×
161	viewButtons.add(addViewButton);	×
162
163	final String nanopubRef = nanopubId == null ? "x:" : nanopubId;	×
164	final AbstractResourceWithProfile footerResource = resourceWithProfile.getSpace() != null ? resourceWithProfile.getSpace() : resourceWithProfile;	×
165	if (resourceWithProfile.isDataInitialized()) {	×
166	add(new ViewList("views", resourceWithProfile, id, nanopubRef, classes, footerResource, viewButtons));	×
167	} else {
168	add(new AjaxLazyLoadPanel<Component>("views") {	×
169
170	@Override
171	public Component getLazyLoadComponent(String markupId) {
172	return new ViewList(markupId, resourceWithProfile, id, nanopubRef, classes, footerResource, viewButtons);	×
173	}
174
175	@Override
176	protected boolean isContentReady() {
177	return resourceWithProfile.isDataInitialized();	×
178	}
179
180	@Override
181	public Component getLoadingComponent(String id) {
182	return new Label(id, "<div class=\"row-section\"><div class=\"col-12\">" + ResultComponent.getWaitIconHtml() + "</div></div>").setEscapeModelStrings(false);	×
183	}
184
185	});
186	}
187	} else {	×
188	// TODO Ugly code duplication (see above):
189
190	final List<AbstractLink> viewButtons = new ArrayList<>();	×
191	AbstractLink addViewButton = new BookmarkablePageLink<NanodashPage>("button", PublishPage.class, new PageParameters()	×
192	.set("template", "https://w3id.org/np/RAZg-r7oQjVZ3Ewy7pUzd9eINl6fCa3HGclTsDeRag5to")	×
193	.set("template-version", "latest")	×
194	.set("param_resource", resourceWithProfile.getSpace().getId())	×
195	.set("context", resourceWithProfile.getSpace().getId())	×
196	.set("part", id)	×
197	);
198	addViewButton.setBody(Model.of("+ view display"));	×
199	viewButtons.add(addViewButton);	×
200
201	if (resourceWithProfile.getSpace().isDataInitialized()) {	×
202	add(new ViewList("views", resourceWithProfile.getSpace(), id, nanopubId, classes, resourceWithProfile.getSpace(), viewButtons));	×
203	} else {
204	add(new AjaxLazyLoadPanel<Component>("views") {	×
205
206	@Override
207	public Component getLazyLoadComponent(String markupId) {
208	return new ViewList(markupId, resourceWithProfile.getSpace(), id, nanopubId, classes, resourceWithProfile.getSpace(), viewButtons);	×
209	}
210
211	@Override
212	protected boolean isContentReady() {
213	return resourceWithProfile.getSpace().isDataInitialized();	×
214	}
215
216	@Override
217	public Component getLoadingComponent(String id) {
218	return new Label(id, "<div class=\"row-section\"><div class=\"col-12\">" + ResultComponent.getWaitIconHtml() + "</div></div>").setEscapeModelStrings(false);	×
219	}
220
221	});
222	}
223	}
224	}	×
225
226	/**
227	* Checks if auto-refresh is enabled for this page.
228	*
229	* @return true if auto-refresh is enabled, false otherwise
230	*/
231	protected boolean hasAutoRefreshEnabled() {
232	return true;	×
233	}
234
235	}

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