21766377938

Committed 06 Feb 2026 09:20PM UTC coverage: 14.086% (+0.2%) from 13.838%

Build # 21766377938

Build Type

push

github

Committed by

tkuhn

Commit Message

refactor: use nanopub URI as preview page id instead of random UUID

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

Run Details

577 of 5266 branches covered (10.96%)

Branch coverage included in aggregate %.

1519 of 9614 relevant lines covered (15.8%)

2.07 hits per line

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86.61

src/main/java/com/knowledgepixels/nanodash/WicketApplication.java

package com.knowledgepixels.nanodash;

import com.google.gson.Gson;
import com.google.gson.reflect.TypeToken;
import com.knowledgepixels.nanodash.connector.*;
import com.knowledgepixels.nanodash.connector.ios.DsNanopubPage;
import com.knowledgepixels.nanodash.connector.ios.DsOverviewPage;
import com.knowledgepixels.nanodash.connector.pensoft.BdjNanopubPage;
import com.knowledgepixels.nanodash.connector.pensoft.BdjOverviewPage;
import com.knowledgepixels.nanodash.connector.pensoft.RioNanopubPage;
import com.knowledgepixels.nanodash.connector.pensoft.RioOverviewPage;
import com.knowledgepixels.nanodash.page.*;
import de.agilecoders.wicket.webjars.WicketWebjars;
import org.apache.http.HttpResponse;
import org.apache.http.client.methods.HttpGet;
import org.apache.http.impl.client.CloseableHttpClient;
import org.apache.http.impl.client.HttpClientBuilder;
import org.apache.wicket.RuntimeConfigurationType;
import org.apache.wicket.Session;
import org.apache.wicket.protocol.http.WebApplication;
import org.apache.wicket.request.Request;
import org.apache.wicket.request.Response;
import org.apache.wicket.settings.ExceptionSettings;
import org.apache.wicket.util.lang.Bytes;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

import java.awt.*;
import java.io.IOException;
import java.io.InputStreamReader;
import java.lang.reflect.Type;
import java.net.URI;
import java.net.URISyntaxException;
import java.util.List;
import java.util.Properties;

/**
 * WicketApplication is the main application class for the Nanodash web application.
 * It initializes the application, mounts pages, and provides version information.
 */
public class WicketApplication extends WebApplication {

    /**
     * URL to fetch the latest release information from GitHub.
     * This URL points to the releases of the Nanodash repository.
     */
    public static final String LATEST_RELEASE_URL = "https://api.github.com/repos/knowledgepixels/nanodash/releases";
    private static final Logger logger = LoggerFactory.getLogger(WicketApplication.class);

    /**
     * Constructor for the WicketApplication.
     * Displays version information and provides instructions for accessing the application.
     */
    public WicketApplication() {
        if (Desktop.isDesktopSupported() && Desktop.getDesktop().isSupported(Desktop.Action.BROWSE)) {
            try {
                Desktop.getDesktop().browse(new URI("http://localhost:37373"));
            } catch (IOException | URISyntaxException ex) {
                logger.error("Error in opening browser", ex);
            }
        }
        String v = getThisVersion();
        String lv = getLatestVersion();
        System.err.println("");
        System.err.println("----------------------------------------");
        System.err.println("               Nanodash");
        System.err.println("----------------------------------------");
        System.err.println(" You are using version: " + v);
        System.err.println(" Latest public version: " + lv);
        System.err.println("----------------------------------------");
        System.err.println(" Your browser should show the Nanodash");
        System.err.println(" interface in a few seconds.");
        System.err.println("");
        System.err.println(" If not, point your browser to:");
        System.err.println(" http://localhost:37373");
        System.err.println("----------------------------------------");
        System.err.println("");
    }

    /**
     * Returns the home page class for the application.
     *
     * @return The HomePage class.
     */
    public Class<HomePage> getHomePage() {
        return HomePage.class;
    }

    /**
     * {@inheritDoc}
     * <p>
     * Initializes the application settings and mounts pages.
     */
    @Override
    protected void init() {
        super.init();
        WicketWebjars.install(this);

        getMarkupSettings().setDefaultMarkupEncoding("UTF-8");

        getExceptionSettings().setUnexpectedExceptionDisplay(ExceptionSettings.SHOW_NO_EXCEPTION_PAGE);

        mountPage(ErrorPage.MOUNT_PATH, ErrorPage.class);
        mountPage("/error/404", ErrorPage.class);
        mountPage("/error/500", ErrorPage.class);

        mountPage(UserPage.MOUNT_PATH, UserPage.class);
        mountPage(ChannelPage.MOUNT_PATH, ChannelPage.class);
        mountPage(SearchPage.MOUNT_PATH, SearchPage.class);
        mountPage(ExplorePage.MOUNT_PATH, ExplorePage.class);
        mountPage(PublishPage.MOUNT_PATH, PublishPage.class);
        mountPage(PreviewPage.MOUNT_PATH, PreviewPage.class);
        mountPage(ProfilePage.MOUNT_PATH, ProfilePage.class);
        mountPage(UserListPage.MOUNT_PATH, UserListPage.class);
        mountPage(GroupDemoPage.MOUNT_PATH, GroupDemoPage.class);
        mountPage(GroupDemoPageSoc.MOUNT_PATH, GroupDemoPageSoc.class);
        mountPage(OrcidLinkingPage.MOUNT_PATH, OrcidLinkingPage.class);
        mountPage(OrcidLoginPage.MOUNT_PATH, OrcidLoginPage.class);
        mountPage(SpaceListPage.MOUNT_PATH, SpaceListPage.class);
        mountPage(MyChannelPage.MOUNT_PATH, MyChannelPage.class);
        mountPage(TermForwarder.MOUNT_PATH, TermForwarder.class);
        mountPage(ViewPage.MOUNT_PATH, ViewPage.class);
        mountPage(GetViewPage.MOUNT_PATH, GetViewPage.class);
        mountPage(DsOverviewPage.MOUNT_PATH, DsOverviewPage.class);
        mountPage(DsNanopubPage.MOUNT_PATH, DsNanopubPage.class);
        mountPage(RioOverviewPage.MOUNT_PATH, RioOverviewPage.class);
        mountPage(RioNanopubPage.MOUNT_PATH, RioNanopubPage.class);
        mountPage(BdjOverviewPage.MOUNT_PATH, BdjOverviewPage.class);
        mountPage(BdjNanopubPage.MOUNT_PATH, BdjNanopubPage.class);
        mountPage(FdoForwarder.MOUNT_PATH, FdoForwarder.class);
        mountPage(GetNamePage.MOUNT_PATH, GetNamePage.class);
        mountPage(TestPage.MOUNT_PATH, TestPage.class);
        mountPage(ResultTablePage.MOUNT_PATH, ResultTablePage.class);
        mountPage(GenOverviewPage.MOUNT_PATH, GenOverviewPage.class);
        mountPage(GenSelectPage.MOUNT_PATH, GenSelectPage.class);
        mountPage(GenPublishPage.MOUNT_PATH, GenPublishPage.class);
        mountPage(GenConnectPage.MOUNT_PATH, GenConnectPage.class);
        mountPage(GenNanopubPage.MOUNT_PATH, GenNanopubPage.class);
        mountPage(ProjectPage.MOUNT_PATH, ProjectPage.class);
        mountPage(SpacePage.MOUNT_PATH, SpacePage.class);
        mountPage(QueryPage.MOUNT_PATH, QueryPage.class);
        mountPage(QueryListPage.MOUNT_PATH, QueryListPage.class);
        mountPage(ListPage.MOUNT_PATH, ListPage.class);
        mountPage(MaintainedResourcePage.MOUNT_PATH, MaintainedResourcePage.class);
        mountPage(ResourcePartPage.MOUNT_PATH, ResourcePartPage.class);

        getCspSettings().blocking().disabled();
        getStoreSettings().setMaxSizePerSession(Bytes.MAX);
    }

    /**
     * {@inheritDoc}
     * <p>
     * Returns the runtime configuration type for the application.
     */
    @Override
    public RuntimeConfigurationType getConfigurationType() {
        return RuntimeConfigurationType.DEPLOYMENT;
    }


    private static String latestVersion = null;

    /**
     * Retrieves the latest version of the application from the GitHub API.
     *
     * @return The latest version as a string.
     */
    public static String getLatestVersion() {
        if (latestVersion != null) return latestVersion;
        try (CloseableHttpClient client = HttpClientBuilder.create().build()) {
            HttpResponse resp = client.execute(new HttpGet(LATEST_RELEASE_URL));
            int c = resp.getStatusLine().getStatusCode();
            if (c < 200 || c >= 300) {
                throw new HttpStatusException(c);
            }

            Gson gson = new Gson();
            Type nanopubReleasesType = new TypeToken<List<NanodashRelease>>() {
            }.getType();

            List<NanodashRelease> releases = gson.fromJson(new InputStreamReader(resp.getEntity().getContent()), nanopubReleasesType);
            if (!releases.isEmpty()) {
                latestVersion = releases.getFirst().getVersionNumber();
            }
        } catch (Exception ex) {
            logger.error("Error in fetching latest version", ex);
        }
        return latestVersion;
    }

    /**
     * Properties object to hold application properties.
     */
    public final static Properties properties = new Properties();

    static {
        try {
            properties.load(WicketApplication.class.getClassLoader().getResourceAsStream("nanodash.properties"));
        } catch (IOException ex) {
            logger.error("Error in loading properties", ex);
        }
    }

    /**
     * Retrieves the current version of the application.
     *
     * @return The current version as a string.
     */
    public static String getThisVersion() {
        return properties.getProperty("nanodash.version");
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public Session newSession(Request request, Response response) {
        return new NanodashSession(request);
    }

}

1	package com.knowledgepixels.nanodash;
2
3	import com.google.gson.Gson;
4	import com.google.gson.reflect.TypeToken;
5	import com.knowledgepixels.nanodash.connector.*;
6	import com.knowledgepixels.nanodash.connector.ios.DsNanopubPage;
7	import com.knowledgepixels.nanodash.connector.ios.DsOverviewPage;
8	import com.knowledgepixels.nanodash.connector.pensoft.BdjNanopubPage;
9	import com.knowledgepixels.nanodash.connector.pensoft.BdjOverviewPage;
10	import com.knowledgepixels.nanodash.connector.pensoft.RioNanopubPage;
11	import com.knowledgepixels.nanodash.connector.pensoft.RioOverviewPage;
12	import com.knowledgepixels.nanodash.page.*;
13	import de.agilecoders.wicket.webjars.WicketWebjars;
14	import org.apache.http.HttpResponse;
15	import org.apache.http.client.methods.HttpGet;
16	import org.apache.http.impl.client.CloseableHttpClient;
17	import org.apache.http.impl.client.HttpClientBuilder;
18	import org.apache.wicket.RuntimeConfigurationType;
19	import org.apache.wicket.Session;
20	import org.apache.wicket.protocol.http.WebApplication;
21	import org.apache.wicket.request.Request;
22	import org.apache.wicket.request.Response;
23	import org.apache.wicket.settings.ExceptionSettings;
24	import org.apache.wicket.util.lang.Bytes;
25	import org.slf4j.Logger;
26	import org.slf4j.LoggerFactory;
27
28	import java.awt.*;
29	import java.io.IOException;
30	import java.io.InputStreamReader;
31	import java.lang.reflect.Type;
32	import java.net.URI;
33	import java.net.URISyntaxException;
34	import java.util.List;
35	import java.util.Properties;
36
37	/**
38	* WicketApplication is the main application class for the Nanodash web application.
39	* It initializes the application, mounts pages, and provides version information.
40	*/
41	public class WicketApplication extends WebApplication {
42
43	/**
44	* URL to fetch the latest release information from GitHub.
45	* This URL points to the releases of the Nanodash repository.
46	*/
47	public static final String LATEST_RELEASE_URL = "https://api.github.com/repos/knowledgepixels/nanodash/releases";
48	private static final Logger logger = LoggerFactory.getLogger(WicketApplication.class);	9✔
49
50	/**
51	* Constructor for the WicketApplication.
52	* Displays version information and provides instructions for accessing the application.
53	*/
54	public WicketApplication() {	6✔
55	if (Desktop.isDesktopSupported() && Desktop.getDesktop().isSupported(Desktop.Action.BROWSE)) {	6!
56	try {
57	Desktop.getDesktop().browse(new URI("http://localhost:37373"));	×
58	} catch (IOException \| URISyntaxException ex) {	×
59	logger.error("Error in opening browser", ex);	×
60	}	×
61	}
62	String v = getThisVersion();	6✔
63	String lv = getLatestVersion();	6✔
64	System.err.println("");	9✔
65	System.err.println("----------------------------------------");	9✔
66	System.err.println(" Nanodash");	9✔
67	System.err.println("----------------------------------------");	9✔
68	System.err.println(" You are using version: " + v);	12✔
69	System.err.println(" Latest public version: " + lv);	12✔
70	System.err.println("----------------------------------------");	9✔
71	System.err.println(" Your browser should show the Nanodash");	9✔
72	System.err.println(" interface in a few seconds.");	9✔
73	System.err.println("");	9✔
74	System.err.println(" If not, point your browser to:");	9✔
75	System.err.println(" http://localhost:37373");	9✔
76	System.err.println("----------------------------------------");	9✔
77	System.err.println("");	9✔
78	}	3✔
79
80	/**
81	* Returns the home page class for the application.
82	*
83	* @return The HomePage class.
84	*/
85	public Class<HomePage> getHomePage() {
86	return HomePage.class;	6✔
87	}
88
89	/**
90	* {@inheritDoc}
91	* <p>
92	* Initializes the application settings and mounts pages.
93	*/
94	@Override
95	protected void init() {
96	super.init();	6✔
97	WicketWebjars.install(this);	6✔
98
99	getMarkupSettings().setDefaultMarkupEncoding("UTF-8");	15✔
100
101	getExceptionSettings().setUnexpectedExceptionDisplay(ExceptionSettings.SHOW_NO_EXCEPTION_PAGE);	15✔
102
103	mountPage(ErrorPage.MOUNT_PATH, ErrorPage.class);	15✔
104	mountPage("/error/404", ErrorPage.class);	15✔
105	mountPage("/error/500", ErrorPage.class);	15✔
106
107	mountPage(UserPage.MOUNT_PATH, UserPage.class);	15✔
108	mountPage(ChannelPage.MOUNT_PATH, ChannelPage.class);	15✔
109	mountPage(SearchPage.MOUNT_PATH, SearchPage.class);	15✔
110	mountPage(ExplorePage.MOUNT_PATH, ExplorePage.class);	15✔
111	mountPage(PublishPage.MOUNT_PATH, PublishPage.class);	15✔
112	mountPage(PreviewPage.MOUNT_PATH, PreviewPage.class);	15✔
113	mountPage(ProfilePage.MOUNT_PATH, ProfilePage.class);	15✔
114	mountPage(UserListPage.MOUNT_PATH, UserListPage.class);	15✔
115	mountPage(GroupDemoPage.MOUNT_PATH, GroupDemoPage.class);	15✔
116	mountPage(GroupDemoPageSoc.MOUNT_PATH, GroupDemoPageSoc.class);	15✔
117	mountPage(OrcidLinkingPage.MOUNT_PATH, OrcidLinkingPage.class);	15✔
118	mountPage(OrcidLoginPage.MOUNT_PATH, OrcidLoginPage.class);	15✔
119	mountPage(SpaceListPage.MOUNT_PATH, SpaceListPage.class);	15✔
120	mountPage(MyChannelPage.MOUNT_PATH, MyChannelPage.class);	15✔
121	mountPage(TermForwarder.MOUNT_PATH, TermForwarder.class);	15✔
122	mountPage(ViewPage.MOUNT_PATH, ViewPage.class);	15✔
123	mountPage(GetViewPage.MOUNT_PATH, GetViewPage.class);	15✔
124	mountPage(DsOverviewPage.MOUNT_PATH, DsOverviewPage.class);	15✔
125	mountPage(DsNanopubPage.MOUNT_PATH, DsNanopubPage.class);	15✔
126	mountPage(RioOverviewPage.MOUNT_PATH, RioOverviewPage.class);	15✔
127	mountPage(RioNanopubPage.MOUNT_PATH, RioNanopubPage.class);	15✔
128	mountPage(BdjOverviewPage.MOUNT_PATH, BdjOverviewPage.class);	15✔
129	mountPage(BdjNanopubPage.MOUNT_PATH, BdjNanopubPage.class);	15✔
130	mountPage(FdoForwarder.MOUNT_PATH, FdoForwarder.class);	15✔
131	mountPage(GetNamePage.MOUNT_PATH, GetNamePage.class);	15✔
132	mountPage(TestPage.MOUNT_PATH, TestPage.class);	15✔
133	mountPage(ResultTablePage.MOUNT_PATH, ResultTablePage.class);	15✔
134	mountPage(GenOverviewPage.MOUNT_PATH, GenOverviewPage.class);	15✔
135	mountPage(GenSelectPage.MOUNT_PATH, GenSelectPage.class);	15✔
136	mountPage(GenPublishPage.MOUNT_PATH, GenPublishPage.class);	15✔
137	mountPage(GenConnectPage.MOUNT_PATH, GenConnectPage.class);	15✔
138	mountPage(GenNanopubPage.MOUNT_PATH, GenNanopubPage.class);	15✔
139	mountPage(ProjectPage.MOUNT_PATH, ProjectPage.class);	15✔
140	mountPage(SpacePage.MOUNT_PATH, SpacePage.class);	15✔
141	mountPage(QueryPage.MOUNT_PATH, QueryPage.class);	15✔
142	mountPage(QueryListPage.MOUNT_PATH, QueryListPage.class);	15✔
143	mountPage(ListPage.MOUNT_PATH, ListPage.class);	15✔
144	mountPage(MaintainedResourcePage.MOUNT_PATH, MaintainedResourcePage.class);	15✔
145	mountPage(ResourcePartPage.MOUNT_PATH, ResourcePartPage.class);	15✔
146
147	getCspSettings().blocking().disabled();	15✔
148	getStoreSettings().setMaxSizePerSession(Bytes.MAX);	15✔
149	}	3✔
150
151	/**
152	* {@inheritDoc}
153	* <p>
154	* Returns the runtime configuration type for the application.
155	*/
156	@Override
157	public RuntimeConfigurationType getConfigurationType() {
158	return RuntimeConfigurationType.DEPLOYMENT;	6✔
159	}
160
161
162	private static String latestVersion = null;	6✔
163
164	/**
165	* Retrieves the latest version of the application from the GitHub API.
166	*
167	* @return The latest version as a string.
168	*/
169	public static String getLatestVersion() {
170	if (latestVersion != null) return latestVersion;	12✔
171	try (CloseableHttpClient client = HttpClientBuilder.create().build()) {	9✔
172	HttpResponse resp = client.execute(new HttpGet(LATEST_RELEASE_URL));	21✔
173	int c = resp.getStatusLine().getStatusCode();	12✔
174	if (c < 200 \|\| c >= 300) {	18!
175	throw new HttpStatusException(c);	×
176	}
177
178	Gson gson = new Gson();	12✔
179	Type nanopubReleasesType = new TypeToken<List<NanodashRelease>>() {	18✔
180	}.getType();	6✔
181
182	List<NanodashRelease> releases = gson.fromJson(new InputStreamReader(resp.getEntity().getContent()), nanopubReleasesType);	33✔
183	if (!releases.isEmpty()) {	9!
184	latestVersion = releases.getFirst().getVersionNumber();	15✔
185	}
186	} catch (Exception ex) {	×
187	logger.error("Error in fetching latest version", ex);	×
188	}	3✔
189	return latestVersion;	6✔
190	}
191
192	/**
193	* Properties object to hold application properties.
194	*/
195	public final static Properties properties = new Properties();	12✔
196
197	static {
198	try {
199	properties.load(WicketApplication.class.getClassLoader().getResourceAsStream("nanodash.properties"));	18✔
200	} catch (IOException ex) {	×
201	logger.error("Error in loading properties", ex);	×
202	}	3✔
203	}	3✔
204
205	/**
206	* Retrieves the current version of the application.
207	*
208	* @return The current version as a string.
209	*/
210	public static String getThisVersion() {
211	return properties.getProperty("nanodash.version");	12✔
212	}
213
214	/**
215	* {@inheritDoc}
216	*/
217	@Override
218	public Session newSession(Request request, Response response) {
219	return new NanodashSession(request);	15✔
220	}
221
222	}

knowledgepixels / nanodash / 21766377938

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