21170833788

Committed 20 Jan 2026 12:04PM UTC coverage: 14.442% (+0.1%) from 14.294%

Build # 21170833788

Build Type

push

github

Committed by

tkuhn

Commit Message

feat(QueryPage): Reactivate YasGUI link with auto-exec-blocker

Run Details

547 of 5064 branches covered (10.8%)

Branch coverage included in aggregate %.

1526 of 9290 relevant lines covered (16.43%)

2.13 hits per line

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0.0

src/main/java/com/knowledgepixels/nanodash/page/QueryPage.java

package com.knowledgepixels.nanodash.page;

import com.github.jsonldjava.shaded.com.google.common.base.Charsets;
import com.google.common.collect.ArrayListMultimap;
import com.google.common.collect.Multimap;
import com.knowledgepixels.nanodash.GrlcQuery;
import com.knowledgepixels.nanodash.Utils;
import com.knowledgepixels.nanodash.ViewDisplay;
import com.knowledgepixels.nanodash.component.QueryParamField;
import com.knowledgepixels.nanodash.component.QueryResultTableBuilder;
import com.knowledgepixels.nanodash.component.TitleBar;

import org.apache.wicket.RestartResponseException;
import org.apache.wicket.feedback.FeedbackMessage;
import org.apache.wicket.markup.html.WebMarkupContainer;
import org.apache.wicket.markup.html.basic.Label;
import org.apache.wicket.markup.html.form.Form;
import org.apache.wicket.markup.html.link.BookmarkablePageLink;
import org.apache.wicket.markup.html.link.ExternalLink;
import org.apache.wicket.markup.html.list.ListItem;
import org.apache.wicket.markup.html.list.ListView;
import org.apache.wicket.markup.html.panel.FeedbackPanel;
import org.apache.wicket.request.mapper.parameter.INamedParameters.NamedPair;
import org.apache.wicket.request.mapper.parameter.PageParameters;
import org.apache.wicket.util.string.StringValue;
import org.nanopub.extra.services.QueryRef;

import java.net.URLEncoder;
import java.util.List;

/**
 * Page for displaying a query and its parameters, allowing users to run the query with specified parameters.
 */
public class QueryPage extends NanodashPage {

    /**
     * The mount path for this page.
     */
    public static final String MOUNT_PATH = "/query";

    private final Form<Void> form;
    private final List<QueryParamField> paramFields;
    private final FeedbackPanel feedbackPanel;

    /**
     * {@inheritDoc}
     */
    @Override
    public String getMountPath() {
        return MOUNT_PATH;
    }

    /**
     * Constructor for the QueryPage.
     *
     * @param parameters The page parameters, which should include the query ID and any query parameters.
     */
    public QueryPage(final PageParameters parameters) {
        super(parameters);
        add(new TitleBar("titlebar", this, null));
        add(new Label("pagetitle", "Query Info | nanodash"));

        String id = parameters.get("id").toString();
        final String queryId = parameters.get("runquery").toString();
        if (id == null) id = queryId;

        final Multimap<String, String> queryParams = ArrayListMultimap.create();
        for (NamedPair param : parameters.getAllNamed()) {
            if (!param.getKey().startsWith("queryparam_")) continue;
            queryParams.put(param.getKey().replaceFirst("queryparam_", ""), param.getValue());
        }

        GrlcQuery q = GrlcQuery.get(id);
        if (!q.getQueryId().equals(id)) {
            throw new RestartResponseException(getClass(), parameters.set("id", q.getQueryId()));
        }

        add(new Label("querylabel", q.getLabel()));
        add(new BookmarkablePageLink<Void>("np", ExplorePage.class, new PageParameters().set("id", q.getNanopub().getUri().stringValue())));
        // TODO Replace hard-coded domain with dynamic solution:
        add(new ExternalLink("openapi-this", "https://query.knowledgepixels.com/openapi/?url=spec/" + id));
        add(new ExternalLink("openapi-latest", "https://query.knowledgepixels.com/openapi/?url=spec/" + id + "%3Fapi-version=latest"));
        add(new Label("querydesc", q.getDescription()));

        form = new Form<Void>("form") {

            @Override
            protected void onConfigure() {
                super.onConfigure();
                form.getFeedbackMessages().clear();
            }

            @Override
            protected void onSubmit() {
                try {
                    PageParameters params = new PageParameters();
                    params.set("runquery", q.getQueryId());
                    for (QueryParamField f : paramFields) {
                        for (String v : f.getValues()) {
                            params.add("queryparam_" + f.getParamName(), v);
                        }
                    }
                    setResponsePage(QueryPage.class, params);
                } catch (Exception ex) {
                    String message = ex.getClass().getName();
                    if (ex.getMessage() != null) message = ex.getMessage();
                    feedbackPanel.error(message);
                }
            }

            @Override
            protected void onValidate() {
                super.onValidate();
                for (QueryParamField f : paramFields) {
                    f.getFormComponent().processInput();
                    for (FeedbackMessage fm : f.getFormComponent().getFeedbackMessages()) {
                        form.getFeedbackMessages().add(fm);
                    }
                }
            }

        };
        form.setOutputMarkupId(true);

        WebMarkupContainer paramContainer = new WebMarkupContainer("params");

        paramFields = q.createParamFields("paramfield");
        paramContainer.add(new ListView<QueryParamField>("paramfields", paramFields) {

            protected void populateItem(ListItem<QueryParamField> item) {
                QueryParamField f = item.getModelObject();
                for (StringValue parameter : parameters.getValues("queryparam_" + f.getParamName())) {
                    f.putValue(parameter.toString().replaceFirst("\\s*$", ""));
                }
                item.add(item.getModelObject());
            }

        });
        paramContainer.setVisible(!paramFields.isEmpty());
        form.add(paramContainer);

        // Hack to prevent auto-execution:
        String sparql = "'auto_execution_blocker: Fill in placeholders below if applicable, then remove this line to run the query'\n\n" + q.getSparql();
        String editLink = q.getEndpoint().stringValue().replaceFirst("^.*/repo/", Utils.getMainQueryUrl() + "tools/") + "/yasgui.html#query=" + URLEncoder.encode(sparql, Charsets.UTF_8);
        // TODO We also need to replace the nanopub-query placeholder service URLs in the query above.
        form.add(new ExternalLink("yasgui", editLink));

        add(form);

        feedbackPanel = new FeedbackPanel("feedback");
        feedbackPanel.setOutputMarkupId(true);
        add(feedbackPanel);

        if (queryId == null) {
            add(new Label("resulttable").setVisible(false));
        } else {
            add(QueryResultTableBuilder.create("resulttable", new QueryRef(queryId, queryParams), new ViewDisplay(20)).plain(true).build());
        }
    }

    /**
     * <p>hasAutoRefreshEnabled.</p>
     *
     * @return a boolean
     */
    protected boolean hasAutoRefreshEnabled() {
        return true;
    }

}

1	package com.knowledgepixels.nanodash.page;
2
3	import com.github.jsonldjava.shaded.com.google.common.base.Charsets;
4	import com.google.common.collect.ArrayListMultimap;
5	import com.google.common.collect.Multimap;
6	import com.knowledgepixels.nanodash.GrlcQuery;
7	import com.knowledgepixels.nanodash.Utils;
8	import com.knowledgepixels.nanodash.ViewDisplay;
9	import com.knowledgepixels.nanodash.component.QueryParamField;
10	import com.knowledgepixels.nanodash.component.QueryResultTableBuilder;
11	import com.knowledgepixels.nanodash.component.TitleBar;
12
13	import org.apache.wicket.RestartResponseException;
14	import org.apache.wicket.feedback.FeedbackMessage;
15	import org.apache.wicket.markup.html.WebMarkupContainer;
16	import org.apache.wicket.markup.html.basic.Label;
17	import org.apache.wicket.markup.html.form.Form;
18	import org.apache.wicket.markup.html.link.BookmarkablePageLink;
19	import org.apache.wicket.markup.html.link.ExternalLink;
20	import org.apache.wicket.markup.html.list.ListItem;
21	import org.apache.wicket.markup.html.list.ListView;
22	import org.apache.wicket.markup.html.panel.FeedbackPanel;
23	import org.apache.wicket.request.mapper.parameter.INamedParameters.NamedPair;
24	import org.apache.wicket.request.mapper.parameter.PageParameters;
25	import org.apache.wicket.util.string.StringValue;
26	import org.nanopub.extra.services.QueryRef;
27
28	import java.net.URLEncoder;
29	import java.util.List;
30
31	/**
32	* Page for displaying a query and its parameters, allowing users to run the query with specified parameters.
33	*/
34	public class QueryPage extends NanodashPage {
35
36	/**
37	* The mount path for this page.
38	*/
39	public static final String MOUNT_PATH = "/query";
40
41	private final Form<Void> form;
42	private final List<QueryParamField> paramFields;
43	private final FeedbackPanel feedbackPanel;
44
45	/**
46	* {@inheritDoc}
47	*/
48	@Override
49	public String getMountPath() {
50	return MOUNT_PATH;	×
51	}
52
53	/**
54	* Constructor for the QueryPage.
55	*
56	* @param parameters The page parameters, which should include the query ID and any query parameters.
57	*/
58	public QueryPage(final PageParameters parameters) {
59	super(parameters);	×
60	add(new TitleBar("titlebar", this, null));	×
61	add(new Label("pagetitle", "Query Info \| nanodash"));	×
62
63	String id = parameters.get("id").toString();	×
64	final String queryId = parameters.get("runquery").toString();	×
65	if (id == null) id = queryId;	×
66
67	final Multimap<String, String> queryParams = ArrayListMultimap.create();	×
68	for (NamedPair param : parameters.getAllNamed()) {	×
69	if (!param.getKey().startsWith("queryparam_")) continue;	×
70	queryParams.put(param.getKey().replaceFirst("queryparam_", ""), param.getValue());	×
71	}	×
72
73	GrlcQuery q = GrlcQuery.get(id);	×
74	if (!q.getQueryId().equals(id)) {	×
75	throw new RestartResponseException(getClass(), parameters.set("id", q.getQueryId()));	×
76	}
77
78	add(new Label("querylabel", q.getLabel()));	×
79	add(new BookmarkablePageLink<Void>("np", ExplorePage.class, new PageParameters().set("id", q.getNanopub().getUri().stringValue())));	×
80	// TODO Replace hard-coded domain with dynamic solution:
81	add(new ExternalLink("openapi-this", "https://query.knowledgepixels.com/openapi/?url=spec/" + id));	×
82	add(new ExternalLink("openapi-latest", "https://query.knowledgepixels.com/openapi/?url=spec/" + id + "%3Fapi-version=latest"));	×
83	add(new Label("querydesc", q.getDescription()));	×
84
85	form = new Form<Void>("form") {	×
86
87	@Override
88	protected void onConfigure() {
89	super.onConfigure();	×
90	form.getFeedbackMessages().clear();	×
91	}	×
92
93	@Override
94	protected void onSubmit() {
95	try {
96	PageParameters params = new PageParameters();	×
97	params.set("runquery", q.getQueryId());	×
98	for (QueryParamField f : paramFields) {	×
99	for (String v : f.getValues()) {	×
100	params.add("queryparam_" + f.getParamName(), v);	×
101	}
102	}	×
103	setResponsePage(QueryPage.class, params);	×
104	} catch (Exception ex) {	×
105	String message = ex.getClass().getName();	×
106	if (ex.getMessage() != null) message = ex.getMessage();	×
107	feedbackPanel.error(message);	×
108	}	×
109	}	×
110
111	@Override
112	protected void onValidate() {
113	super.onValidate();	×
114	for (QueryParamField f : paramFields) {	×
115	f.getFormComponent().processInput();	×
116	for (FeedbackMessage fm : f.getFormComponent().getFeedbackMessages()) {	×
117	form.getFeedbackMessages().add(fm);	×
118	}	×
119	}	×
120	}	×
121
122	};
123	form.setOutputMarkupId(true);	×
124
125	WebMarkupContainer paramContainer = new WebMarkupContainer("params");	×
126
127	paramFields = q.createParamFields("paramfield");	×
128	paramContainer.add(new ListView<QueryParamField>("paramfields", paramFields) {	×
129
130	protected void populateItem(ListItem<QueryParamField> item) {
131	QueryParamField f = item.getModelObject();	×
132	for (StringValue parameter : parameters.getValues("queryparam_" + f.getParamName())) {	×
133	f.putValue(parameter.toString().replaceFirst("\\s*$", ""));	×
134	}	×
135	item.add(item.getModelObject());	×
136	}	×
137
138	});
139	paramContainer.setVisible(!paramFields.isEmpty());	×
140	form.add(paramContainer);	×
141
142	// Hack to prevent auto-execution:
143	String sparql = "'auto_execution_blocker: Fill in placeholders below if applicable, then remove this line to run the query'\n\n" + q.getSparql();	×
144	String editLink = q.getEndpoint().stringValue().replaceFirst("^.*/repo/", Utils.getMainQueryUrl() + "tools/") + "/yasgui.html#query=" + URLEncoder.encode(sparql, Charsets.UTF_8);	×
145	// TODO We also need to replace the nanopub-query placeholder service URLs in the query above.
146	form.add(new ExternalLink("yasgui", editLink));	×
147
148	add(form);	×
149
150	feedbackPanel = new FeedbackPanel("feedback");	×
151	feedbackPanel.setOutputMarkupId(true);	×
152	add(feedbackPanel);	×
153
154	if (queryId == null) {	×
155	add(new Label("resulttable").setVisible(false));	×
156	} else {
157	add(QueryResultTableBuilder.create("resulttable", new QueryRef(queryId, queryParams), new ViewDisplay(20)).plain(true).build());	×
158	}
159	}	×
160
161	/**
162	* <p>hasAutoRefreshEnabled.</p>
163	*
164	* @return a boolean
165	*/
166	protected boolean hasAutoRefreshEnabled() {
167	return true;	×
168	}
169
170	}

knowledgepixels / nanodash / 21170833788

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