ProteinsWebTeam / interpro7-api / 1

Committed 18 Jun 2024 09:19AM UTC coverage: 25.541% (-68.5%) from 94.023%

Build # 1

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push

github

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web-flow

Commit Message

Merge pull request #147 from ProteinsWebTeam/set-sortable

sort by in sets

Run Details

1 of 2 new or added lines in 1 file covered. (50.0%)

6742 existing lines in 50 files now uncovered.

2559 of 10019 relevant lines covered (25.54%)

0.51 hits per line

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12.5

/functional_tests/tests.py

1	from functional_tests.base import FunctionalTest	2✔
2	from selenium.webdriver.common.by import By	2✔
3	import json	2✔
4	import re	2✔
5
6
7	class RESTRequestsTest(FunctionalTest):	2✔
8	def test_request_entry_endpoint(self):	2✔
UNCOV 9	self.browser.get(self.server_url + "/api/entry/?format=json")	×
UNCOV 10	content = self.browser.find_element(By.TAG_NAME, "body").text	×
UNCOV 11	jsonp = json.loads(content)	×
12
UNCOV 13	self.assertEqual(len(jsonp["entries"]), 5, "the output has exactly 5 keys")	×
UNCOV 14	self.assertIn('"member_databases"', content)	×
UNCOV 15	self.assertIn('"interpro"', content)	×
UNCOV 16	self.assertIn('"unintegrated"', content)	×
17
UNCOV 18	num_interpro = jsonp["entries"]["interpro"]	×
UNCOV 19	self.assertEqual(	×
20	num_interpro, 2, "the fixtures dataset only includes two interpro entry"
21	)
22
UNCOV 23	self.browser.get(self.server_url + "/api/entry/interpro?format=json")	×
UNCOV 24	content = self.browser.find_element(By.TAG_NAME, "body").text	×
25
UNCOV 26	jsonp = json.loads(content)	×
27
UNCOV 28	self.assertEqual(	×
29	len(jsonp["results"]),
30	num_interpro,
31	"The response should have as many entries as reported in /entry ",
32	)
33
UNCOV 34	acc = jsonp["results"][0]["metadata"]["accession"]	×
UNCOV 35	self.assertEqual(acc, "IPR001165")	×
UNCOV 36	self.browser.get(	×
37	self.server_url + "/api/entry/interpro/" + acc + "?format=json"
38	)
UNCOV 39	content = self.browser.find_element(By.TAG_NAME, "body").text	×
40
UNCOV 41	jsonp = json.loads(content)	×
UNCOV 42	self.assertEqual(	×
43	acc,
44	jsonp["metadata"]["accession"],
45	"The accession in the response object should be the same as reequested",
46	)
UNCOV 47	self.assertIn(	×
48	"metadata",
49	jsonp.keys(),
50	"'metadata' should be one of the keys in the response",
51	)
UNCOV 52	self.assertTrue(	×
53	isinstance(jsonp["metadata"]["go_terms"], list), "go_terms should be a list"
54	)
55
UNCOV 56	self.assertEqual(jsonp["metadata"]["counters"]["proteins"], 1)	×
57
58	def test_request_protein_endpoint(self):	2✔
UNCOV 59	self.browser.get(self.server_url + "/api/protein/?format=json")	×
UNCOV 60	content = self.browser.find_element(By.TAG_NAME, "body").text	×
61
UNCOV 62	jsonp = json.loads(content)	×
63
UNCOV 64	self.assertEqual(len(jsonp["proteins"]), 3, "the output has exactly 3 keys")	×
65
UNCOV 66	self.assertIn('"uniprot"', content)	×
67
UNCOV 68	num_uniprot = jsonp["proteins"]["uniprot"]	×
UNCOV 69	self.assertEqual(	×
70	num_uniprot, 5, "the TEST dataset only includes 5 uniprot entries"
71	)
72
UNCOV 73	self.browser.get(self.server_url + "/api/protein/uniprot?format=json")	×
UNCOV 74	content = self.browser.find_element(By.TAG_NAME, "body").text	×
75
UNCOV 76	jsonp = json.loads(content)	×
77
UNCOV 78	self.assertEqual(	×
79	len(jsonp["results"]),
80	num_uniprot,
81	"The response should have as many entries as reported in /entry ",
82	)
UNCOV 83	acc = jsonp["results"][0]["metadata"]["accession"]	×
84
UNCOV 85	self.browser.get(	×
86	self.server_url + "/api/protein/uniprot/" + acc + "?format=json"
87	)
UNCOV 88	content = self.browser.find_element(By.TAG_NAME, "body").text	×
89
UNCOV 90	jsonp = json.loads(content)	×
UNCOV 91	self.assertEqual(	×
92	acc,
93	jsonp["metadata"]["accession"],
94	"The accession in the response object should be the same as reequested",
95	)
UNCOV 96	self.assertIn(	×
97	"category",
98	jsonp["metadata"]["go_terms"][0],
99	"the key is part of the go_terms and has been parsed OK",
100	)
101
UNCOV 102	self.browser.get(	×
103	self.server_url
104	+ "/api/protein/uniprot/"
105	+ jsonp["metadata"]["id"]
106	+ "?format=json"
107	)
UNCOV 108	content2 = self.browser.find_element(By.TAG_NAME, "body").text	×
109
UNCOV 110	jsonp2 = json.loads(content2)	×
UNCOV 111	self.assertEqual(	×
112	jsonp,
113	jsonp2,
114	"The recovered JSON object when quierying by accession should be the same than the "
115	"correspondent search by ID",
116	)
117
118	def test_request_to_api_frontend(self):	2✔
UNCOV 119	url = "/api/entry/"	×
UNCOV 120	self.browser.get(self.server_url + url)	×
121
UNCOV 122	req_info = self.browser.find_element(By.CSS_SELECTOR, ".request-info").text	×
123
UNCOV 124	self.assertIn("GET", req_info)	×
UNCOV 125	self.assertIn(url, req_info)	×
126
UNCOV 127	response = self.browser.find_element(By.CSS_SELECTOR, ".response-info").text	×
UNCOV 128	match = re.search("[\{\[]", response)	×
UNCOV 129	json_frontend = json.loads(response[match.start() :])	×
130
UNCOV 131	self.browser.find_element(By.CSS_SELECTOR, ".format-selection button").click()	×
UNCOV 132	self.click_link_and_wait(	×
133	self.browser.find_element(By.CSS_SELECTOR, ".js-tooltip.format-option")
134	)
135
UNCOV 136	content = self.browser.find_element(By.TAG_NAME, "body").text	×
137
UNCOV 138	jsonp = json.loads(content)	×
139
UNCOV 140	self.assertEqual(json_frontend, jsonp)	×

ProteinsWebTeam / interpro7-api / 1

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