neurospin-deepinsight / brainprep / 20305076052

coverage: 79.341%. Remained the same
20305076052

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AGrigis 
brainprep: fix linters.

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0.0
/brainprep/cli.py
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##########################################################################
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# NSAp - Copyright (C) CEA, 2022 - 2025
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# Distributed under the terms of the CeCILL-B license, as published by
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# the CEA-CNRS-INRIA. Refer to the LICENSE file or to
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# http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
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# for details.
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##########################################################################
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""" Provide a command line interface.










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"""










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def main():




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    """










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    BrainPrep command-line interface.










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    This function exposes all BrainPrep workflows through a unified










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    command-line interface powered by ``fire``. Each workflow










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    corresponds to a processing pipeline implemented in










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    ``brainprep.workflow`` and can be invoked directly from the terminal.










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    Notes










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    -----










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    This function relies on ``fire.Fire`` to automatically generate a










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    command-line interface from a dictionary mapping workflow names to










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    their corresponding functions. Any additional keyword arguments










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    provided on the command line are forwarded to the selected workflow.










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    """










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    import fire




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    import brainprep.workflow as wf




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    fire.Fire({




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        "subject-level-qa": wf.brainprep_quality_assurance,










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        "group-level-qa": wf.brainprep_group_quality_assurance,










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        "subject-level-defacing": wf.brainprep_defacing,










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        "subject-level-quasiraw": wf.brainprep_quasiraw,










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        "group-level-quasiraw": wf.brainprep_group_quasiraw,










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        "subject-level-brainparc": wf.brainprep_brainparc,










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        "group-level-brainparc": wf.brainprep_group_brainparc,










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        "longitudinal-brainparc": wf.brainprep_longitudinal_brainparc,










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        "subject-level-vbm": wf.brainprep_vbm,










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        "group-level-vbm": wf.brainprep_group_vbm,










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        "longitudinal-vbm": wf.brainprep_longitudinal_vbm,










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        "subject-level-fmriprep": wf.brainprep_fmriprep,










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        # "tbss-preproc": wf.brainprep_tbss_preproc,










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        # "tbss": wf.brainprep_tbss,










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        "subject-level-dmriprep": wf.brainprep_dmriprep,










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        "group-level-dmriprep": wf.brainprep_group_dmriprep










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    })
























    

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