Recached

#423

Committed 17 Dec 2025 10:33AM UTC coverage: 56.982% (-1.0%) from 57.972%

Build # #423

Build Type

push

github

Committed by

web-flow

Commit Message

refresh 2025-12 (including extensions) (#218)

* "id" is a required field in for Parameters and WorkflowSteps
* regen; drop CommandLineBindableImpl; add optional CWL extensions

Run Details

185 of 577 new or added lines in 21 files covered. (32.06%)

10 existing lines in 10 files now uncovered.

7892 of 13850 relevant lines covered (56.98%)

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/src/main/java/org/commonwl/cwlsdk/cwl1_2/LoopInputImpl.java

// Copyright Common Workflow Language project contributors
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
//      http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.

package org.commonwl.cwlsdk.cwl1_2;

import org.commonwl.cwlsdk.cwl1_2.utils.LoaderInstances;
import org.commonwl.cwlsdk.cwl1_2.utils.LoadingOptions;
import org.commonwl.cwlsdk.cwl1_2.utils.LoadingOptionsBuilder;
import org.commonwl.cwlsdk.cwl1_2.utils.SaveableImpl;
import org.commonwl.cwlsdk.cwl1_2.utils.ValidationException;

/**
* Auto-generated class implementation for <I>http://commonwl.org/cwltool#LoopInput</I><BR>
 */
public class LoopInputImpl extends SaveableImpl implements LoopInput {
  private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();
  private java.util.Map<String, Object> extensionFields_ =
      new java.util.HashMap<String, Object>();
  public LoadingOptions getLoadingOptions() {
    return this.loadingOptions_;
  }
  public java.util.Map<String, Object> getExtensionFields() {
    return this.extensionFields_;
  }

  private java.util.Optional<String> id;

  /**
   * Getter for property <I>http://commonwl.org/cwltool#LoopInput/id</I><BR>
   * <BLOCKQUOTE>
   * It must reference the `id` of one of the elements in the `in` field of the step.   * </BLOCKQUOTE>
   */

  public java.util.Optional<String> getId() {
    return this.id;
  }

  private java.util.Optional<Object> default_;

  /**
   * Getter for property <I>https://w3id.org/cwl/salad#default</I><BR>
   * <BLOCKQUOTE>
   * The default value for this parameter to use if either there is no
   * `source` field, or the value produced by the `source` is `null`.  The
   * default must be applied prior to scattering or evaluating `valueFrom`.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<Object> getDefault() {
    return this.default_;
  }

  private java.util.Optional<LinkMergeMethod> linkMerge;

  /**
   * Getter for property <I>http://commonwl.org/cwltool#LoopInput/linkMerge</I><BR>
   * <BLOCKQUOTE>
   * The method to use to merge multiple inbound links into a single array.
   * If not specified, the default method is &quot;merge_nested&quot;.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<LinkMergeMethod> getLinkMerge() {
    return this.linkMerge;
  }

  private Object loopSource;

  /**
   * Getter for property <I>http://commonwl.org/cwltool#LoopInput/loopSource</I><BR>
   * <BLOCKQUOTE>
   * Specifies one or more of the step output parameters that will
   * provide input to the loop iterations after the first one (inputs
   * of the first iteration are the step input parameters).
   *    * </BLOCKQUOTE>
   */

  public Object getLoopSource() {
    return this.loopSource;
  }

  private java.util.Optional<PickValueMethod> pickValue;

  /**
   * Getter for property <I>http://commonwl.org/cwltool#LoopInput/pickValue</I><BR>
   * <BLOCKQUOTE>
   * The method to use to choose non-null elements among multiple sources.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<PickValueMethod> getPickValue() {
    return this.pickValue;
  }

  private Object valueFrom;

  /**
   * Getter for property <I>http://commonwl.org/cwltool#LoopInput/valueFrom</I><BR>
   * <BLOCKQUOTE>
   * To use valueFrom, [StepInputExpressionRequirement](#StepInputExpressionRequirement) must
   * be specified in the workflow or workflow step requirements.
   * 
   * If `valueFrom` is a constant string value, use this as the value for
   * this input parameter.
   * 
   * If `valueFrom` is a parameter reference or expression, it must be
   * evaluated to yield the actual value to be assigned to the input field.
   * 
   * The `self` value in the parameter reference or expression must be
   * `null` if there is no `loopSource` field, or the value of the
   * parameter(s) specified in the `loopSource` field.
   * 
   * The value of `inputs` in the parameter reference or expression must be
   * the input object to the previous iteration of the workflow step (or the initial
   * inputs for the first iteration).
   *    * </BLOCKQUOTE>
   */

  public Object getValueFrom() {
    return this.valueFrom;
  }

  /**
   * Used by {@link org.commonwl.cwlsdk.cwl1_2.utils.RootLoader} to construct instances of LoopInputImpl.
   *
   * @param __doc_            Document fragment to load this record object from (presumably a
                              {@link java.util.Map}).
   * @param __baseUri_        Base URI to generate child document IDs against.
   * @param __loadingOptions  Context for loading URIs and populating objects.
   * @param __docRoot_        ID at this position in the document (if available) (maybe?)
   * @throws ValidationException If the document fragment is not a {@link java.util.Map}
   *                             or validation of fields fails.
   */
  public LoopInputImpl(
      final Object __doc_,
      final String __baseUri_,
      LoadingOptions __loadingOptions,
      final String __docRoot_) {
    super(__doc_, __baseUri_, __loadingOptions, __docRoot_);
    // Prefix plumbing variables with '__' to reduce likelihood of collision with
    // generated names.
    String __baseUri = __baseUri_;
    String __docRoot = __docRoot_;
    if (!(__doc_ instanceof java.util.Map)) {
      throw new ValidationException("LoopInputImpl called on non-map");
    }
    final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;
    final java.util.List<ValidationException> __errors =
        new java.util.ArrayList<ValidationException>();
    if (__loadingOptions != null) {
      this.loadingOptions_ = __loadingOptions;
    }
    java.util.Optional<String> id;

    if (__doc.containsKey("id")) {
      try {
        id =
            LoaderInstances
                .uri_optional_StringInstance_True_False_None_None
                .loadField(__doc.get("id"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        id = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `id` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      id = null;
    }

    Boolean __original_is_null = id == null;
    if (id == null) {
      if (__docRoot != null) {
        id = java.util.Optional.of(__docRoot);
      } else {
        id = java.util.Optional.of("_:" + java.util.UUID.randomUUID().toString());
      }
    }
    if (__original_is_null) {
        __baseUri = __baseUri_;
    } else {
        __baseUri = (String) id.orElse(null);
    }
    java.util.Optional<Object> default_;

    if (__doc.containsKey("default")) {
      try {
        default_ =
            LoaderInstances
                .optional_AnyInstance
                .loadField(__doc.get("default"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        default_ = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `default` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      default_ = null;
    }
    java.util.Optional<LinkMergeMethod> linkMerge;

    if (__doc.containsKey("linkMerge")) {
      try {
        linkMerge =
            LoaderInstances
                .optional_LinkMergeMethod
                .loadField(__doc.get("linkMerge"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        linkMerge = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `linkMerge` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      linkMerge = null;
    }
    Object loopSource;

    if (__doc.containsKey("loopSource")) {
      try {
        loopSource =
            LoaderInstances
                .uri_union_of_NullInstance_or_StringInstance_or_array_of_StringInstance_False_False_1_None
                .loadField(__doc.get("loopSource"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        loopSource = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `loopSource` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      loopSource = null;
    }
    java.util.Optional<PickValueMethod> pickValue;

    if (__doc.containsKey("pickValue")) {
      try {
        pickValue =
            LoaderInstances
                .optional_PickValueMethod
                .loadField(__doc.get("pickValue"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        pickValue = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `pickValue` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      pickValue = null;
    }
    Object valueFrom;

    if (__doc.containsKey("valueFrom")) {
      try {
        valueFrom =
            LoaderInstances
                .union_of_NullInstance_or_StringInstance_or_ExpressionLoader
                .loadField(__doc.get("valueFrom"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        valueFrom = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `valueFrom` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      valueFrom = null;
    }
    if (!__errors.isEmpty()) {
      throw new ValidationException("Trying 'RecordField'", __errors);
    }
    this.default_ = (java.util.Optional<Object>) default_;
    this.id = (java.util.Optional<String>) id;
    this.linkMerge = (java.util.Optional<LinkMergeMethod>) linkMerge;
    this.loopSource = (Object) loopSource;
    this.pickValue = (java.util.Optional<PickValueMethod>) pickValue;
    this.valueFrom = (Object) valueFrom;
    for (String field:__doc.keySet()) {
      if (!attrs.contains(field)) {
        if (field.contains(":")) {
          String expanded_field = __loadingOptions.expandUrl(field, "", false, false, null);
          extensionFields_.put(expanded_field, __doc.get(field));
        }
      }
    }
  }
  private java.util.List<String> attrs = java.util.Arrays.asList("default", "id", "linkMerge", "loopSource", "pickValue", "valueFrom");
}

1	// Copyright Common Workflow Language project contributors
2	//
3	// Licensed under the Apache License, Version 2.0 (the "License");
4	// you may not use this file except in compliance with the License.
5	// You may obtain a copy of the License at
6	//
7	// http://www.apache.org/licenses/LICENSE-2.0
8	//
9	// Unless required by applicable law or agreed to in writing, software
10	// distributed under the License is distributed on an "AS IS" BASIS,
11	// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12	// See the License for the specific language governing permissions and
13	// limitations under the License.
14
15	package org.commonwl.cwlsdk.cwl1_2;
16
17	import org.commonwl.cwlsdk.cwl1_2.utils.LoaderInstances;
18	import org.commonwl.cwlsdk.cwl1_2.utils.LoadingOptions;
19	import org.commonwl.cwlsdk.cwl1_2.utils.LoadingOptionsBuilder;
20	import org.commonwl.cwlsdk.cwl1_2.utils.SaveableImpl;
21	import org.commonwl.cwlsdk.cwl1_2.utils.ValidationException;
22
23	/**
24	* Auto-generated class implementation for <I>http://commonwl.org/cwltool#LoopInput</I><BR>
25	*/
26	public class LoopInputImpl extends SaveableImpl implements LoopInput {
NEW 27	private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();	×
NEW 28	private java.util.Map<String, Object> extensionFields_ =	×
29	new java.util.HashMap<String, Object>();
30	public LoadingOptions getLoadingOptions() {
NEW 31	return this.loadingOptions_;	×
32	}
33	public java.util.Map<String, Object> getExtensionFields() {
NEW 34	return this.extensionFields_;	×
35	}
36
37	private java.util.Optional<String> id;
38
39	/**
40	* Getter for property <I>http://commonwl.org/cwltool#LoopInput/id</I><BR>
41	* <BLOCKQUOTE>
42	* It must reference the `id` of one of the elements in the `in` field of the step. * </BLOCKQUOTE>
43	*/
44
45	public java.util.Optional<String> getId() {
NEW 46	return this.id;	×
47	}
48
49	private java.util.Optional<Object> default_;
50
51	/**
52	* Getter for property <I>https://w3id.org/cwl/salad#default</I><BR>
53	* <BLOCKQUOTE>
54	* The default value for this parameter to use if either there is no
55	* `source` field, or the value produced by the `source` is `null`. The
56	* default must be applied prior to scattering or evaluating `valueFrom`.
57	* * </BLOCKQUOTE>
58	*/
59
60	public java.util.Optional<Object> getDefault() {
NEW 61	return this.default_;	×
62	}
63
64	private java.util.Optional<LinkMergeMethod> linkMerge;
65
66	/**
67	* Getter for property <I>http://commonwl.org/cwltool#LoopInput/linkMerge</I><BR>
68	* <BLOCKQUOTE>
69	* The method to use to merge multiple inbound links into a single array.
70	* If not specified, the default method is "merge_nested".
71	* * </BLOCKQUOTE>
72	*/
73
74	public java.util.Optional<LinkMergeMethod> getLinkMerge() {
NEW 75	return this.linkMerge;	×
76	}
77
78	private Object loopSource;
79
80	/**
81	* Getter for property <I>http://commonwl.org/cwltool#LoopInput/loopSource</I><BR>
82	* <BLOCKQUOTE>
83	* Specifies one or more of the step output parameters that will
84	* provide input to the loop iterations after the first one (inputs
85	* of the first iteration are the step input parameters).
86	* * </BLOCKQUOTE>
87	*/
88
89	public Object getLoopSource() {
NEW 90	return this.loopSource;	×
91	}
92
93	private java.util.Optional<PickValueMethod> pickValue;
94
95	/**
96	* Getter for property <I>http://commonwl.org/cwltool#LoopInput/pickValue</I><BR>
97	* <BLOCKQUOTE>
98	* The method to use to choose non-null elements among multiple sources.
99	* * </BLOCKQUOTE>
100	*/
101
102	public java.util.Optional<PickValueMethod> getPickValue() {
NEW 103	return this.pickValue;	×
104	}
105
106	private Object valueFrom;
107
108	/**
109	* Getter for property <I>http://commonwl.org/cwltool#LoopInput/valueFrom</I><BR>
110	* <BLOCKQUOTE>
111	* To use valueFrom, [StepInputExpressionRequirement](#StepInputExpressionRequirement) must
112	* be specified in the workflow or workflow step requirements.
113	*
114	* If `valueFrom` is a constant string value, use this as the value for
115	* this input parameter.
116	*
117	* If `valueFrom` is a parameter reference or expression, it must be
118	* evaluated to yield the actual value to be assigned to the input field.
119	*
120	* The `self` value in the parameter reference or expression must be
121	* `null` if there is no `loopSource` field, or the value of the
122	* parameter(s) specified in the `loopSource` field.
123	*
124	* The value of `inputs` in the parameter reference or expression must be
125	* the input object to the previous iteration of the workflow step (or the initial
126	* inputs for the first iteration).
127	* * </BLOCKQUOTE>
128	*/
129
130	public Object getValueFrom() {
NEW 131	return this.valueFrom;	×
132	}
133
134	/**
135	* Used by {@link org.commonwl.cwlsdk.cwl1_2.utils.RootLoader} to construct instances of LoopInputImpl.
136	*
137	* @param __doc_ Document fragment to load this record object from (presumably a
138	{@link java.util.Map}).
139	* @param __baseUri_ Base URI to generate child document IDs against.
140	* @param __loadingOptions Context for loading URIs and populating objects.
141	* @param __docRoot_ ID at this position in the document (if available) (maybe?)
142	* @throws ValidationException If the document fragment is not a {@link java.util.Map}
143	* or validation of fields fails.
144	*/
145	public LoopInputImpl(
146	final Object __doc_,
147	final String __baseUri_,
148	LoadingOptions __loadingOptions,
149	final String __docRoot_) {
NEW 150	super(__doc_, __baseUri_, __loadingOptions, __docRoot_);	×
151	// Prefix plumbing variables with '__' to reduce likelihood of collision with
152	// generated names.
NEW 153	String __baseUri = __baseUri_;	×
NEW 154	String __docRoot = __docRoot_;	×
NEW 155	if (!(__doc_ instanceof java.util.Map)) {	×
NEW 156	throw new ValidationException("LoopInputImpl called on non-map");	×
157	}
NEW 158	final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;	×
NEW 159	final java.util.List<ValidationException> __errors =	×
160	new java.util.ArrayList<ValidationException>();
NEW 161	if (__loadingOptions != null) {	×
NEW 162	this.loadingOptions_ = __loadingOptions;	×
163	}
164	java.util.Optional<String> id;
165
NEW 166	if (__doc.containsKey("id")) {	×
167	try {
NEW 168	id =	×
169	LoaderInstances
170	.uri_optional_StringInstance_True_False_None_None
NEW 171	.loadField(__doc.get("id"), __baseUri, __loadingOptions);	×
NEW 172	} catch (ValidationException e) {	×
NEW 173	id = null; // won't be used but prevents compiler from complaining.	×
NEW 174	final String __message = "the `id` field is not valid because:";	×
NEW 175	__errors.add(new ValidationException(__message, e));	×
NEW 176	}	×
177
178	} else {
NEW 179	id = null;	×
180	}
181
NEW 182	Boolean __original_is_null = id == null;	×
NEW 183	if (id == null) {	×
NEW 184	if (__docRoot != null) {	×
NEW 185	id = java.util.Optional.of(__docRoot);	×
186	} else {
NEW 187	id = java.util.Optional.of("_:" + java.util.UUID.randomUUID().toString());	×
188	}
189	}
NEW 190	if (__original_is_null) {	×
NEW 191	__baseUri = __baseUri_;	×
192	} else {
NEW 193	__baseUri = (String) id.orElse(null);	×
194	}
195	java.util.Optional<Object> default_;
196
NEW 197	if (__doc.containsKey("default")) {	×
198	try {
NEW 199	default_ =	×
200	LoaderInstances
201	.optional_AnyInstance
NEW 202	.loadField(__doc.get("default"), __baseUri, __loadingOptions);	×
NEW 203	} catch (ValidationException e) {	×
NEW 204	default_ = null; // won't be used but prevents compiler from complaining.	×
NEW 205	final String __message = "the `default` field is not valid because:";	×
NEW 206	__errors.add(new ValidationException(__message, e));	×
NEW 207	}	×
208
209	} else {
NEW 210	default_ = null;	×
211	}
212	java.util.Optional<LinkMergeMethod> linkMerge;
213
NEW 214	if (__doc.containsKey("linkMerge")) {	×
215	try {
NEW 216	linkMerge =	×
217	LoaderInstances
218	.optional_LinkMergeMethod
NEW 219	.loadField(__doc.get("linkMerge"), __baseUri, __loadingOptions);	×
NEW 220	} catch (ValidationException e) {	×
NEW 221	linkMerge = null; // won't be used but prevents compiler from complaining.	×
NEW 222	final String __message = "the `linkMerge` field is not valid because:";	×
NEW 223	__errors.add(new ValidationException(__message, e));	×
NEW 224	}	×
225
226	} else {
NEW 227	linkMerge = null;	×
228	}
229	Object loopSource;
230
NEW 231	if (__doc.containsKey("loopSource")) {	×
232	try {
NEW 233	loopSource =	×
234	LoaderInstances
235	.uri_union_of_NullInstance_or_StringInstance_or_array_of_StringInstance_False_False_1_None
NEW 236	.loadField(__doc.get("loopSource"), __baseUri, __loadingOptions);	×
NEW 237	} catch (ValidationException e) {	×
NEW 238	loopSource = null; // won't be used but prevents compiler from complaining.	×
NEW 239	final String __message = "the `loopSource` field is not valid because:";	×
NEW 240	__errors.add(new ValidationException(__message, e));	×
NEW 241	}	×
242
243	} else {
NEW 244	loopSource = null;	×
245	}
246	java.util.Optional<PickValueMethod> pickValue;
247
NEW 248	if (__doc.containsKey("pickValue")) {	×
249	try {
NEW 250	pickValue =	×
251	LoaderInstances
252	.optional_PickValueMethod
NEW 253	.loadField(__doc.get("pickValue"), __baseUri, __loadingOptions);	×
NEW 254	} catch (ValidationException e) {	×
NEW 255	pickValue = null; // won't be used but prevents compiler from complaining.	×
NEW 256	final String __message = "the `pickValue` field is not valid because:";	×
NEW 257	__errors.add(new ValidationException(__message, e));	×
NEW 258	}	×
259
260	} else {
NEW 261	pickValue = null;	×
262	}
263	Object valueFrom;
264
NEW 265	if (__doc.containsKey("valueFrom")) {	×
266	try {
NEW 267	valueFrom =	×
268	LoaderInstances
269	.union_of_NullInstance_or_StringInstance_or_ExpressionLoader
NEW 270	.loadField(__doc.get("valueFrom"), __baseUri, __loadingOptions);	×
NEW 271	} catch (ValidationException e) {	×
NEW 272	valueFrom = null; // won't be used but prevents compiler from complaining.	×
NEW 273	final String __message = "the `valueFrom` field is not valid because:";	×
NEW 274	__errors.add(new ValidationException(__message, e));	×
NEW 275	}	×
276
277	} else {
NEW 278	valueFrom = null;	×
279	}
NEW 280	if (!__errors.isEmpty()) {	×
NEW 281	throw new ValidationException("Trying 'RecordField'", __errors);	×
282	}
NEW 283	this.default_ = (java.util.Optional<Object>) default_;	×
NEW 284	this.id = (java.util.Optional<String>) id;	×
NEW 285	this.linkMerge = (java.util.Optional<LinkMergeMethod>) linkMerge;	×
NEW 286	this.loopSource = (Object) loopSource;	×
NEW 287	this.pickValue = (java.util.Optional<PickValueMethod>) pickValue;	×
NEW 288	this.valueFrom = (Object) valueFrom;	×
NEW 289	for (String field:__doc.keySet()) {	×
NEW 290	if (!attrs.contains(field)) {	×
NEW 291	if (field.contains(":")) {	×
NEW 292	String expanded_field = __loadingOptions.expandUrl(field, "", false, false, null);	×
NEW 293	extensionFields_.put(expanded_field, __doc.get(field));	×
294	}
295	}
NEW 296	}	×
NEW 297	}	×
NEW 298	private java.util.List<String> attrs = java.util.Arrays.asList("default", "id", "linkMerge", "loopSource", "pickValue", "valueFrom");	×
299	}

common-workflow-language / cwljava / #423

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