#421

Committed 16 Dec 2025 08:00PM UTC coverage: 57.962% (-0.01%) from 57.972%

Build # #421

Build Type

Pull #218

github

Committed by

web-flow

Commit Message

Merge 0d5009150 into 4d3285bc2

Pull Request Pull Request #218: "id" is a required field in for `Parameter`s and `WorkflowStep`s

Run Details

23 of 43 new or added lines in 12 files covered. (53.49%)

10 existing lines in 10 files now uncovered.

7735 of 13345 relevant lines covered (57.96%)

0.58 hits per line

Source File
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58.97

/src/main/java/org/commonwl/cwlsdk/cwl1_2/WorkflowStepOutputImpl.java

// Copyright Common Workflow Language project contributors
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
//      http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.

package org.commonwl.cwlsdk.cwl1_2;

import org.commonwl.cwlsdk.cwl1_2.utils.LoaderInstances;
import org.commonwl.cwlsdk.cwl1_2.utils.LoadingOptions;
import org.commonwl.cwlsdk.cwl1_2.utils.LoadingOptionsBuilder;
import org.commonwl.cwlsdk.cwl1_2.utils.SaveableImpl;
import org.commonwl.cwlsdk.cwl1_2.utils.ValidationException;

/**
* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#WorkflowStepOutput</I><BR> <BLOCKQUOTE>
 Associate an output parameter of the underlying process with a workflow
 parameter.  The workflow parameter (given in the `id` field) be may be used
 as a `source` to connect with input parameters of other workflow steps, or
 with an output parameter of the process.
 
 A unique identifier for this workflow output parameter.  This is
 the identifier to use in the `source` field of `WorkflowStepInput`
 to connect the output value to downstream parameters.
  </BLOCKQUOTE>
 */
public class WorkflowStepOutputImpl extends SaveableImpl implements WorkflowStepOutput {
  private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();
  private java.util.Map<String, Object> extensionFields_ =
      new java.util.HashMap<String, Object>();
  public LoadingOptions getLoadingOptions() {
    return this.loadingOptions_;
  }
  public java.util.Map<String, Object> getExtensionFields() {
    return this.extensionFields_;
  }

  private String id;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#WorkflowStepOutput/id</I><BR>
   * <BLOCKQUOTE>
   * The unique identifier of the workflow parameter to export.   * </BLOCKQUOTE>
   */

  public String getId() {
    return this.id;
  }

  /**
   * Used by {@link org.commonwl.cwlsdk.cwl1_2.utils.RootLoader} to construct instances of WorkflowStepOutputImpl.
   *
   * @param __doc_            Document fragment to load this record object from (presumably a
                              {@link java.util.Map}).
   * @param __baseUri_        Base URI to generate child document IDs against.
   * @param __loadingOptions  Context for loading URIs and populating objects.
   * @param __docRoot_        ID at this position in the document (if available) (maybe?)
   * @throws ValidationException If the document fragment is not a {@link java.util.Map}
   *                             or validation of fields fails.
   */
  public WorkflowStepOutputImpl(
      final Object __doc_,
      final String __baseUri_,
      LoadingOptions __loadingOptions,
      final String __docRoot_) {
    super(__doc_, __baseUri_, __loadingOptions, __docRoot_);
    // Prefix plumbing variables with '__' to reduce likelihood of collision with
    // generated names.
    String __baseUri = __baseUri_;
    String __docRoot = __docRoot_;
    if (!(__doc_ instanceof java.util.Map)) {
      throw new ValidationException("WorkflowStepOutputImpl called on non-map");
    }
    final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;
    final java.util.List<ValidationException> __errors =
        new java.util.ArrayList<ValidationException>();
    if (__loadingOptions != null) {
      this.loadingOptions_ = __loadingOptions;
    }
    String id;

    if (__doc.containsKey("id")) {
      try {
        id =
            LoaderInstances
                .uri_StringInstance_True_False_None_None
                .loadField(__doc.get("id"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        id = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `id` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      id = null;
    }

    if (id == null) {
      if (__docRoot != null) {
        id = __docRoot;
      } else {
        throw new ValidationException("Missing id");
      }
    }
    __baseUri = (String) id;
    if (!__errors.isEmpty()) {
      throw new ValidationException("Trying 'RecordField'", __errors);
    }
    this.id = (String) id;
    for (String field:__doc.keySet()) {
      if (!attrs.contains(field)) {
        if (field.contains(":")) {
          String expanded_field = __loadingOptions.expandUrl(field, "", false, false, null);
          extensionFields_.put(expanded_field, __doc.get(field));
        }
      }
    }
  }
  private java.util.List<String> attrs = java.util.Arrays.asList("id");
}

1	// Copyright Common Workflow Language project contributors
2	//
3	// Licensed under the Apache License, Version 2.0 (the "License");
4	// you may not use this file except in compliance with the License.
5	// You may obtain a copy of the License at
6	//
7	// http://www.apache.org/licenses/LICENSE-2.0
8	//
9	// Unless required by applicable law or agreed to in writing, software
10	// distributed under the License is distributed on an "AS IS" BASIS,
11	// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12	// See the License for the specific language governing permissions and
13	// limitations under the License.
14
15	package org.commonwl.cwlsdk.cwl1_2;
16
17	import org.commonwl.cwlsdk.cwl1_2.utils.LoaderInstances;
18	import org.commonwl.cwlsdk.cwl1_2.utils.LoadingOptions;
19	import org.commonwl.cwlsdk.cwl1_2.utils.LoadingOptionsBuilder;
20	import org.commonwl.cwlsdk.cwl1_2.utils.SaveableImpl;
21	import org.commonwl.cwlsdk.cwl1_2.utils.ValidationException;
22
23	/**
24	* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#WorkflowStepOutput</I><BR> <BLOCKQUOTE>
25	Associate an output parameter of the underlying process with a workflow
26	parameter. The workflow parameter (given in the `id` field) be may be used
27	as a `source` to connect with input parameters of other workflow steps, or
28	with an output parameter of the process.
29
30	A unique identifier for this workflow output parameter. This is
31	the identifier to use in the `source` field of `WorkflowStepInput`
32	to connect the output value to downstream parameters.
33	</BLOCKQUOTE>
34	*/
35	public class WorkflowStepOutputImpl extends SaveableImpl implements WorkflowStepOutput {
36	private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();	1✔
37	private java.util.Map<String, Object> extensionFields_ =	1✔
38	new java.util.HashMap<String, Object>();
39	public LoadingOptions getLoadingOptions() {
40	return this.loadingOptions_;	×
41	}
42	public java.util.Map<String, Object> getExtensionFields() {
43	return this.extensionFields_;	×
44	}
45
46	private String id;
47
48	/**
49	* Getter for property <I>https://w3id.org/cwl/cwl#WorkflowStepOutput/id</I><BR>
50	* <BLOCKQUOTE>
51	* The unique identifier of the workflow parameter to export. * </BLOCKQUOTE>
52	*/
53
54	public String getId() {
55	return this.id;	×
56	}
57
58	/**
59	* Used by {@link org.commonwl.cwlsdk.cwl1_2.utils.RootLoader} to construct instances of WorkflowStepOutputImpl.
60	*
61	* @param __doc_ Document fragment to load this record object from (presumably a
62	{@link java.util.Map}).
63	* @param __baseUri_ Base URI to generate child document IDs against.
64	* @param __loadingOptions Context for loading URIs and populating objects.
65	* @param __docRoot_ ID at this position in the document (if available) (maybe?)
66	* @throws ValidationException If the document fragment is not a {@link java.util.Map}
67	* or validation of fields fails.
68	*/
69	public WorkflowStepOutputImpl(
70	final Object __doc_,
71	final String __baseUri_,
72	LoadingOptions __loadingOptions,
73	final String __docRoot_) {
74	super(__doc_, __baseUri_, __loadingOptions, __docRoot_);	1✔
75	// Prefix plumbing variables with '__' to reduce likelihood of collision with
76	// generated names.
77	String __baseUri = __baseUri_;	1✔
78	String __docRoot = __docRoot_;	1✔
79	if (!(__doc_ instanceof java.util.Map)) {	1✔
80	throw new ValidationException("WorkflowStepOutputImpl called on non-map");	×
81	}
82	final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;	1✔
83	final java.util.List<ValidationException> __errors =	1✔
84	new java.util.ArrayList<ValidationException>();
85	if (__loadingOptions != null) {	1✔
86	this.loadingOptions_ = __loadingOptions;	1✔
87	}
88	String id;
89
90	if (__doc.containsKey("id")) {	1✔
91	try {
92	id =	1✔
93	LoaderInstances
94	.uri_StringInstance_True_False_None_None
95	.loadField(__doc.get("id"), __baseUri, __loadingOptions);	1✔
96	} catch (ValidationException e) {	×
97	id = null; // won't be used but prevents compiler from complaining.	×
98	final String __message = "the `id` field is not valid because:";	×
99	__errors.add(new ValidationException(__message, e));	×
100	}	1✔
101
102	} else {
103	id = null;	×
104	}
105
106	if (id == null) {	1✔
UNCOV 107	if (__docRoot != null) {	×
NEW 108	id = __docRoot;	×
109	} else {
NEW 110	throw new ValidationException("Missing id");	×
111	}
112	}
113	__baseUri = (String) id;	1✔
114	if (!__errors.isEmpty()) {	1✔
115	throw new ValidationException("Trying 'RecordField'", __errors);	×
116	}
117	this.id = (String) id;	1✔
118	for (String field:__doc.keySet()) {	1✔
119	if (!attrs.contains(field)) {	1✔
120	if (field.contains(":")) {	×
121	String expanded_field = __loadingOptions.expandUrl(field, "", false, false, null);	×
122	extensionFields_.put(expanded_field, __doc.get(field));	×
123	}
124	}
125	}	1✔
126	}	1✔
127	private java.util.List<String> attrs = java.util.Arrays.asList("id");	1✔
128	}

common-workflow-language / cwljava / #421

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