#421

Committed 16 Dec 2025 08:00PM UTC coverage: 57.962% (-0.01%) from 57.972%

Build # #421

Build Type

Pull #218

github

Committed by

web-flow

Commit Message

Merge 0d5009150 into 4d3285bc2

Pull Request Pull Request #218: "id" is a required field in for `Parameter`s and `WorkflowStep`s

Run Details

23 of 43 new or added lines in 12 files covered. (53.49%)

10 existing lines in 10 files now uncovered.

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48.3

/src/main/java/org/commonwl/cwlsdk/cwl1_2/WorkflowInputParameterImpl.java

// Copyright Common Workflow Language project contributors
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
//      http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.

package org.commonwl.cwlsdk.cwl1_2;

import org.commonwl.cwlsdk.cwl1_2.utils.LoaderInstances;
import org.commonwl.cwlsdk.cwl1_2.utils.LoadingOptions;
import org.commonwl.cwlsdk.cwl1_2.utils.LoadingOptionsBuilder;
import org.commonwl.cwlsdk.cwl1_2.utils.SaveableImpl;
import org.commonwl.cwlsdk.cwl1_2.utils.ValidationException;

/**
* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#WorkflowInputParameter</I><BR>
 */
public class WorkflowInputParameterImpl extends SaveableImpl implements WorkflowInputParameter {
  private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();
  private java.util.Map<String, Object> extensionFields_ =
      new java.util.HashMap<String, Object>();
  public LoadingOptions getLoadingOptions() {
    return this.loadingOptions_;
  }
  public java.util.Map<String, Object> getExtensionFields() {
    return this.extensionFields_;
  }

  private String id;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#Parameter/id</I><BR>
   * <BLOCKQUOTE>
   * The unique identifier for this Parameter.   * </BLOCKQUOTE>
   */

  public String getId() {
    return this.id;
  }

  private java.util.Optional<String> label;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#Labeled/label</I><BR>
   * <BLOCKQUOTE>
   * A short, human-readable label of this object.   * </BLOCKQUOTE>
   */

  public java.util.Optional<String> getLabel() {
    return this.label;
  }

  private Object secondaryFiles;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#secondaryFiles</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: File` or is an array of `items: File`.
   * 
   * Provides a pattern or expression specifying files or
   * directories that should be included alongside the primary
   * file.  Secondary files may be required or optional.  When not
   * explicitly specified, secondary files specified for `inputs`
   * are required and `outputs` are optional.  An implementation
   * must include matching Files and Directories in the
   * `secondaryFiles` property of the primary file.  These Files
   * and Directories must be transferred and staged alongside the
   * primary file.  An implementation may fail workflow execution
   * if a required secondary file does not exist.
   * 
   * If the value is an expression, the value of `self` in the expression
   * must be the primary input or output File object to which this binding
   * applies.  The `basename`, `nameroot` and `nameext` fields must be
   * present in `self`.  For `CommandLineTool` outputs the `path` field must
   * also be present.  The expression must return a filename string relative
   * to the path to the primary File, a File or Directory object with either
   * `path` or `location` and `basename` fields set, or an array consisting
   * of strings or File or Directory objects.  It is legal to reference an
   * unchanged File or Directory object taken from input as a secondaryFile.
   * The expression may return &quot;null&quot; in which case there is no secondaryFile
   * from that expression.
   * 
   * To work on non-filename-preserving storage systems, portable tool
   * descriptions should avoid constructing new values from `location`, but
   * should construct relative references using `basename` or `nameroot`
   * instead.
   * 
   * If a value in `secondaryFiles` is a string that is not an expression,
   * it specifies that the following pattern should be applied to the path
   * of the primary file to yield a filename relative to the primary File:
   * 
   *   1. If string ends with `?` character, remove the last `?` and mark
   *     the resulting secondary file as optional.
   *   2. If string begins with one or more caret `^` characters, for each
   *     caret, remove the last file extension from the path (the last
   *     period `.` and all following characters).  If there are no file
   *     extensions, the path is unchanged.
   *   3. Append the remainder of the string to the end of the file path.
   *    * </BLOCKQUOTE>
   */

  public Object getSecondaryFiles() {
    return this.secondaryFiles;
  }

  private java.util.Optional<Boolean> streamable;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#FieldBase/streamable</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: File` or is an array of `items: File`.
   * 
   * A value of `true` indicates that the file is read or written
   * sequentially without seeking.  An implementation may use this flag to
   * indicate whether it is valid to stream file contents using a named
   * pipe.  Default: `false`.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<Boolean> getStreamable() {
    return this.streamable;
  }

  private Object doc;

  /**
   * Getter for property <I>https://w3id.org/cwl/salad#Documented/doc</I><BR>
   * <BLOCKQUOTE>
   * A documentation string for this object, or an array of strings which should be concatenated.   * </BLOCKQUOTE>
   */

  public Object getDoc() {
    return this.doc;
  }

  private Object format;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#format</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: File` or is an array of `items: File`.
   * 
   * This must be one or more IRIs of concept nodes
   * that represents file formats which are allowed as input to this
   * parameter, preferably defined within an ontology.  If no ontology is
   * available, file formats may be tested by exact match.
   *    * </BLOCKQUOTE>
   */

  public Object getFormat() {
    return this.format;
  }

  private java.util.Optional<Boolean> loadContents;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#LoadContents/loadContents</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: File` or is an array of `items: File`.
   * 
   * If true, the file (or each file in the array) must be a UTF-8
   * text file 64 KiB or smaller, and the implementation must read
   * the entire contents of the file (or file array) and place it
   * in the `contents` field of the File object for use by
   * expressions.  If the size of the file is greater than 64 KiB,
   * the implementation must raise a fatal error.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<Boolean> getLoadContents() {
    return this.loadContents;
  }

  private java.util.Optional<LoadListingEnum> loadListing;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#LoadContents/loadListing</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: Directory` or is an array of `items: Directory`.
   * 
   * Specify the desired behavior for loading the `listing` field of
   * a Directory object for use by expressions.
   * 
   * The order of precedence for loadListing is:
   * 
   *   1. `loadListing` on an individual parameter
   *   2. Inherited from `LoadListingRequirement`
   *   3. By default: `no_listing`
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<LoadListingEnum> getLoadListing() {
    return this.loadListing;
  }

  private java.util.Optional<Object> default_;

  /**
   * Getter for property <I>https://w3id.org/cwl/salad#default</I><BR>
   * <BLOCKQUOTE>
   * The default value to use for this parameter if the parameter is missing
   * from the input object, or if the value of the parameter in the input
   * object is `null`.  Default values are applied before evaluating expressions
   * (e.g. dependent `valueFrom` fields).
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<Object> getDefault() {
    return this.default_;
  }

  private Object type;

  /**
   * Getter for property <I>https://w3id.org/cwl/salad#type</I><BR>
   * <BLOCKQUOTE>
   * Specify valid types of data that may be assigned to this parameter.
   *    * </BLOCKQUOTE>
   */

  public Object getType() {
    return this.type;
  }

  private java.util.Optional<InputBinding> inputBinding;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#WorkflowInputParameter/inputBinding</I><BR>
   * <BLOCKQUOTE>
   * Deprecated.  Preserved for v1.0 backwards compatibility.  Will be removed in
   * CWL v2.0.  Use `WorkflowInputParameter.loadContents` instead.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<InputBinding> getInputBinding() {
    return this.inputBinding;
  }

  /**
   * Used by {@link org.commonwl.cwlsdk.cwl1_2.utils.RootLoader} to construct instances of WorkflowInputParameterImpl.
   *
   * @param __doc_            Document fragment to load this record object from (presumably a
                              {@link java.util.Map}).
   * @param __baseUri_        Base URI to generate child document IDs against.
   * @param __loadingOptions  Context for loading URIs and populating objects.
   * @param __docRoot_        ID at this position in the document (if available) (maybe?)
   * @throws ValidationException If the document fragment is not a {@link java.util.Map}
   *                             or validation of fields fails.
   */
  public WorkflowInputParameterImpl(
      final Object __doc_,
      final String __baseUri_,
      LoadingOptions __loadingOptions,
      final String __docRoot_) {
    super(__doc_, __baseUri_, __loadingOptions, __docRoot_);
    // Prefix plumbing variables with '__' to reduce likelihood of collision with
    // generated names.
    String __baseUri = __baseUri_;
    String __docRoot = __docRoot_;
    if (!(__doc_ instanceof java.util.Map)) {
      throw new ValidationException("WorkflowInputParameterImpl called on non-map");
    }
    final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;
    final java.util.List<ValidationException> __errors =
        new java.util.ArrayList<ValidationException>();
    if (__loadingOptions != null) {
      this.loadingOptions_ = __loadingOptions;
    }
    String id;

    if (__doc.containsKey("id")) {
      try {
        id =
            LoaderInstances
                .uri_StringInstance_True_False_None_None
                .loadField(__doc.get("id"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        id = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `id` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      id = null;
    }

    if (id == null) {
      if (__docRoot != null) {
        id = __docRoot;
      } else {
        throw new ValidationException("Missing id");
      }
    }
    __baseUri = (String) id;
    java.util.Optional<String> label;

    if (__doc.containsKey("label")) {
      try {
        label =
            LoaderInstances
                .optional_StringInstance
                .loadField(__doc.get("label"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        label = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `label` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      label = null;
    }
    Object secondaryFiles;

    if (__doc.containsKey("secondaryFiles")) {
      try {
        secondaryFiles =
            LoaderInstances
                .secondaryfilesdsl_union_of_NullInstance_or_SecondaryFileSchema_or_array_of_SecondaryFileSchema
                .loadField(__doc.get("secondaryFiles"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        secondaryFiles = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `secondaryFiles` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      secondaryFiles = null;
    }
    java.util.Optional<Boolean> streamable;

    if (__doc.containsKey("streamable")) {
      try {
        streamable =
            LoaderInstances
                .optional_BooleanInstance
                .loadField(__doc.get("streamable"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        streamable = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `streamable` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      streamable = null;
    }
    Object doc;

    if (__doc.containsKey("doc")) {
      try {
        doc =
            LoaderInstances
                .union_of_NullInstance_or_StringInstance_or_array_of_StringInstance
                .loadField(__doc.get("doc"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        doc = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `doc` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      doc = null;
    }
    Object format;

    if (__doc.containsKey("format")) {
      try {
        format =
            LoaderInstances
                .uri_union_of_NullInstance_or_StringInstance_or_array_of_StringInstance_or_ExpressionLoader_True_False_None_True
                .loadField(__doc.get("format"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        format = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `format` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      format = null;
    }
    java.util.Optional<Boolean> loadContents;

    if (__doc.containsKey("loadContents")) {
      try {
        loadContents =
            LoaderInstances
                .optional_BooleanInstance
                .loadField(__doc.get("loadContents"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        loadContents = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `loadContents` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      loadContents = null;
    }
    java.util.Optional<LoadListingEnum> loadListing;

    if (__doc.containsKey("loadListing")) {
      try {
        loadListing =
            LoaderInstances
                .optional_LoadListingEnum
                .loadField(__doc.get("loadListing"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        loadListing = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `loadListing` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      loadListing = null;
    }
    java.util.Optional<Object> default_;

    if (__doc.containsKey("default")) {
      try {
        default_ =
            LoaderInstances
                .optional_CWLObjectType
                .loadField(__doc.get("default"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        default_ = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `default` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      default_ = null;
    }
    Object type;
    try {
      type =
          LoaderInstances
              .typedsl_union_of_CWLType_or_InputRecordSchema_or_InputEnumSchema_or_InputArraySchema_or_StringInstance_or_array_of_union_of_CWLType_or_InputRecordSchema_or_InputEnumSchema_or_InputArraySchema_or_StringInstance_2
              .loadField(__doc.get("type"), __baseUri, __loadingOptions);
    } catch (ValidationException e) {
      type = null; // won't be used but prevents compiler from complaining.
      final String __message = "the `type` field is not valid because:";
      __errors.add(new ValidationException(__message, e));
    }
    java.util.Optional<InputBinding> inputBinding;

    if (__doc.containsKey("inputBinding")) {
      try {
        inputBinding =
            LoaderInstances
                .optional_InputBinding
                .loadField(__doc.get("inputBinding"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        inputBinding = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `inputBinding` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      inputBinding = null;
    }
    if (!__errors.isEmpty()) {
      throw new ValidationException("Trying 'RecordField'", __errors);
    }
    this.label = (java.util.Optional<String>) label;
    this.secondaryFiles = (Object) secondaryFiles;
    this.streamable = (java.util.Optional<Boolean>) streamable;
    this.doc = (Object) doc;
    this.id = (String) id;
    this.format = (Object) format;
    this.loadContents = (java.util.Optional<Boolean>) loadContents;
    this.loadListing = (java.util.Optional<LoadListingEnum>) loadListing;
    this.default_ = (java.util.Optional<Object>) default_;
    this.type = (Object) type;
    this.inputBinding = (java.util.Optional<InputBinding>) inputBinding;
    for (String field:__doc.keySet()) {
      if (!attrs.contains(field)) {
        if (field.contains(":")) {
          String expanded_field = __loadingOptions.expandUrl(field, "", false, false, null);
          extensionFields_.put(expanded_field, __doc.get(field));
        }
      }
    }
  }
  private java.util.List<String> attrs = java.util.Arrays.asList("label", "secondaryFiles", "streamable", "doc", "id", "format", "loadContents", "loadListing", "default", "type", "inputBinding");
}

1	// Copyright Common Workflow Language project contributors
2	//
3	// Licensed under the Apache License, Version 2.0 (the "License");
4	// you may not use this file except in compliance with the License.
5	// You may obtain a copy of the License at
6	//
7	// http://www.apache.org/licenses/LICENSE-2.0
8	//
9	// Unless required by applicable law or agreed to in writing, software
10	// distributed under the License is distributed on an "AS IS" BASIS,
11	// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12	// See the License for the specific language governing permissions and
13	// limitations under the License.
14
15	package org.commonwl.cwlsdk.cwl1_2;
16
17	import org.commonwl.cwlsdk.cwl1_2.utils.LoaderInstances;
18	import org.commonwl.cwlsdk.cwl1_2.utils.LoadingOptions;
19	import org.commonwl.cwlsdk.cwl1_2.utils.LoadingOptionsBuilder;
20	import org.commonwl.cwlsdk.cwl1_2.utils.SaveableImpl;
21	import org.commonwl.cwlsdk.cwl1_2.utils.ValidationException;
22
23	/**
24	* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#WorkflowInputParameter</I><BR>
25	*/
26	public class WorkflowInputParameterImpl extends SaveableImpl implements WorkflowInputParameter {
27	private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();	1✔
28	private java.util.Map<String, Object> extensionFields_ =	1✔
29	new java.util.HashMap<String, Object>();
30	public LoadingOptions getLoadingOptions() {
31	return this.loadingOptions_;	×
32	}
33	public java.util.Map<String, Object> getExtensionFields() {
34	return this.extensionFields_;	×
35	}
36
37	private String id;
38
39	/**
40	* Getter for property <I>https://w3id.org/cwl/cwl#Parameter/id</I><BR>
41	* <BLOCKQUOTE>
42	* The unique identifier for this Parameter. * </BLOCKQUOTE>
43	*/
44
45	public String getId() {
46	return this.id;	1✔
47	}
48
49	private java.util.Optional<String> label;
50
51	/**
52	* Getter for property <I>https://w3id.org/cwl/cwl#Labeled/label</I><BR>
53	* <BLOCKQUOTE>
54	* A short, human-readable label of this object. * </BLOCKQUOTE>
55	*/
56
57	public java.util.Optional<String> getLabel() {
58	return this.label;	×
59	}
60
61	private Object secondaryFiles;
62
63	/**
64	* Getter for property <I>https://w3id.org/cwl/cwl#secondaryFiles</I><BR>
65	* <BLOCKQUOTE>
66	* Only valid when `type: File` or is an array of `items: File`.
67	*
68	* Provides a pattern or expression specifying files or
69	* directories that should be included alongside the primary
70	* file. Secondary files may be required or optional. When not
71	* explicitly specified, secondary files specified for `inputs`
72	* are required and `outputs` are optional. An implementation
73	* must include matching Files and Directories in the
74	* `secondaryFiles` property of the primary file. These Files
75	* and Directories must be transferred and staged alongside the
76	* primary file. An implementation may fail workflow execution
77	* if a required secondary file does not exist.
78	*
79	* If the value is an expression, the value of `self` in the expression
80	* must be the primary input or output File object to which this binding
81	* applies. The `basename`, `nameroot` and `nameext` fields must be
82	* present in `self`. For `CommandLineTool` outputs the `path` field must
83	* also be present. The expression must return a filename string relative
84	* to the path to the primary File, a File or Directory object with either
85	* `path` or `location` and `basename` fields set, or an array consisting
86	* of strings or File or Directory objects. It is legal to reference an
87	* unchanged File or Directory object taken from input as a secondaryFile.
88	* The expression may return "null" in which case there is no secondaryFile
89	* from that expression.
90	*
91	* To work on non-filename-preserving storage systems, portable tool
92	* descriptions should avoid constructing new values from `location`, but
93	* should construct relative references using `basename` or `nameroot`
94	* instead.
95	*
96	* If a value in `secondaryFiles` is a string that is not an expression,
97	* it specifies that the following pattern should be applied to the path
98	* of the primary file to yield a filename relative to the primary File:
99	*
100	* 1. If string ends with `?` character, remove the last `?` and mark
101	* the resulting secondary file as optional.
102	* 2. If string begins with one or more caret `^` characters, for each
103	* caret, remove the last file extension from the path (the last
104	* period `.` and all following characters). If there are no file
105	* extensions, the path is unchanged.
106	* 3. Append the remainder of the string to the end of the file path.
107	* * </BLOCKQUOTE>
108	*/
109
110	public Object getSecondaryFiles() {
111	return this.secondaryFiles;	1✔
112	}
113
114	private java.util.Optional<Boolean> streamable;
115
116	/**
117	* Getter for property <I>https://w3id.org/cwl/cwl#FieldBase/streamable</I><BR>
118	* <BLOCKQUOTE>
119	* Only valid when `type: File` or is an array of `items: File`.
120	*
121	* A value of `true` indicates that the file is read or written
122	* sequentially without seeking. An implementation may use this flag to
123	* indicate whether it is valid to stream file contents using a named
124	* pipe. Default: `false`.
125	* * </BLOCKQUOTE>
126	*/
127
128	public java.util.Optional<Boolean> getStreamable() {
129	return this.streamable;	×
130	}
131
132	private Object doc;
133
134	/**
135	* Getter for property <I>https://w3id.org/cwl/salad#Documented/doc</I><BR>
136	* <BLOCKQUOTE>
137	* A documentation string for this object, or an array of strings which should be concatenated. * </BLOCKQUOTE>
138	*/
139
140	public Object getDoc() {
141	return this.doc;	×
142	}
143
144	private Object format;
145
146	/**
147	* Getter for property <I>https://w3id.org/cwl/cwl#format</I><BR>
148	* <BLOCKQUOTE>
149	* Only valid when `type: File` or is an array of `items: File`.
150	*
151	* This must be one or more IRIs of concept nodes
152	* that represents file formats which are allowed as input to this
153	* parameter, preferably defined within an ontology. If no ontology is
154	* available, file formats may be tested by exact match.
155	* * </BLOCKQUOTE>
156	*/
157
158	public Object getFormat() {
159	return this.format;	×
160	}
161
162	private java.util.Optional<Boolean> loadContents;
163
164	/**
165	* Getter for property <I>https://w3id.org/cwl/cwl#LoadContents/loadContents</I><BR>
166	* <BLOCKQUOTE>
167	* Only valid when `type: File` or is an array of `items: File`.
168	*
169	* If true, the file (or each file in the array) must be a UTF-8
170	* text file 64 KiB or smaller, and the implementation must read
171	* the entire contents of the file (or file array) and place it
172	* in the `contents` field of the File object for use by
173	* expressions. If the size of the file is greater than 64 KiB,
174	* the implementation must raise a fatal error.
175	* * </BLOCKQUOTE>
176	*/
177
178	public java.util.Optional<Boolean> getLoadContents() {
179	return this.loadContents;	×
180	}
181
182	private java.util.Optional<LoadListingEnum> loadListing;
183
184	/**
185	* Getter for property <I>https://w3id.org/cwl/cwl#LoadContents/loadListing</I><BR>
186	* <BLOCKQUOTE>
187	* Only valid when `type: Directory` or is an array of `items: Directory`.
188	*
189	* Specify the desired behavior for loading the `listing` field of
190	* a Directory object for use by expressions.
191	*
192	* The order of precedence for loadListing is:
193	*
194	* 1. `loadListing` on an individual parameter
195	* 2. Inherited from `LoadListingRequirement`
196	* 3. By default: `no_listing`
197	* * </BLOCKQUOTE>
198	*/
199
200	public java.util.Optional<LoadListingEnum> getLoadListing() {
201	return this.loadListing;	×
202	}
203
204	private java.util.Optional<Object> default_;
205
206	/**
207	* Getter for property <I>https://w3id.org/cwl/salad#default</I><BR>
208	* <BLOCKQUOTE>
209	* The default value to use for this parameter if the parameter is missing
210	* from the input object, or if the value of the parameter in the input
211	* object is `null`. Default values are applied before evaluating expressions
212	* (e.g. dependent `valueFrom` fields).
213	* * </BLOCKQUOTE>
214	*/
215
216	public java.util.Optional<Object> getDefault() {
217	return this.default_;	×
218	}
219
220	private Object type;
221
222	/**
223	* Getter for property <I>https://w3id.org/cwl/salad#type</I><BR>
224	* <BLOCKQUOTE>
225	* Specify valid types of data that may be assigned to this parameter.
226	* * </BLOCKQUOTE>
227	*/
228
229	public Object getType() {
230	return this.type;	×
231	}
232
233	private java.util.Optional<InputBinding> inputBinding;
234
235	/**
236	* Getter for property <I>https://w3id.org/cwl/cwl#WorkflowInputParameter/inputBinding</I><BR>
237	* <BLOCKQUOTE>
238	* Deprecated. Preserved for v1.0 backwards compatibility. Will be removed in
239	* CWL v2.0. Use `WorkflowInputParameter.loadContents` instead.
240	* * </BLOCKQUOTE>
241	*/
242
243	public java.util.Optional<InputBinding> getInputBinding() {
244	return this.inputBinding;	×
245	}
246
247	/**
248	* Used by {@link org.commonwl.cwlsdk.cwl1_2.utils.RootLoader} to construct instances of WorkflowInputParameterImpl.
249	*
250	* @param __doc_ Document fragment to load this record object from (presumably a
251	{@link java.util.Map}).
252	* @param __baseUri_ Base URI to generate child document IDs against.
253	* @param __loadingOptions Context for loading URIs and populating objects.
254	* @param __docRoot_ ID at this position in the document (if available) (maybe?)
255	* @throws ValidationException If the document fragment is not a {@link java.util.Map}
256	* or validation of fields fails.
257	*/
258	public WorkflowInputParameterImpl(
259	final Object __doc_,
260	final String __baseUri_,
261	LoadingOptions __loadingOptions,
262	final String __docRoot_) {
263	super(__doc_, __baseUri_, __loadingOptions, __docRoot_);	1✔
264	// Prefix plumbing variables with '__' to reduce likelihood of collision with
265	// generated names.
266	String __baseUri = __baseUri_;	1✔
267	String __docRoot = __docRoot_;	1✔
268	if (!(__doc_ instanceof java.util.Map)) {	1✔
269	throw new ValidationException("WorkflowInputParameterImpl called on non-map");	×
270	}
271	final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;	1✔
272	final java.util.List<ValidationException> __errors =	1✔
273	new java.util.ArrayList<ValidationException>();
274	if (__loadingOptions != null) {	1✔
275	this.loadingOptions_ = __loadingOptions;	1✔
276	}
277	String id;
278
279	if (__doc.containsKey("id")) {	1✔
280	try {
281	id =	1✔
282	LoaderInstances
283	.uri_StringInstance_True_False_None_None
284	.loadField(__doc.get("id"), __baseUri, __loadingOptions);	1✔
285	} catch (ValidationException e) {	×
286	id = null; // won't be used but prevents compiler from complaining.	×
287	final String __message = "the `id` field is not valid because:";	×
288	__errors.add(new ValidationException(__message, e));	×
289	}	1✔
290
291	} else {
292	id = null;	×
293	}
294
295	if (id == null) {	1✔
UNCOV 296	if (__docRoot != null) {	×
NEW 297	id = __docRoot;	×
298	} else {
NEW 299	throw new ValidationException("Missing id");	×
300	}
301	}
302	__baseUri = (String) id;	1✔
303	java.util.Optional<String> label;
304
305	if (__doc.containsKey("label")) {	1✔
306	try {
307	label =	×
308	LoaderInstances
309	.optional_StringInstance
310	.loadField(__doc.get("label"), __baseUri, __loadingOptions);	×
311	} catch (ValidationException e) {	×
312	label = null; // won't be used but prevents compiler from complaining.	×
313	final String __message = "the `label` field is not valid because:";	×
314	__errors.add(new ValidationException(__message, e));	×
315	}	×
316
317	} else {
318	label = null;	1✔
319	}
320	Object secondaryFiles;
321
322	if (__doc.containsKey("secondaryFiles")) {	1✔
323	try {
324	secondaryFiles =	1✔
325	LoaderInstances
326	.secondaryfilesdsl_union_of_NullInstance_or_SecondaryFileSchema_or_array_of_SecondaryFileSchema
327	.loadField(__doc.get("secondaryFiles"), __baseUri, __loadingOptions);	1✔
328	} catch (ValidationException e) {	×
329	secondaryFiles = null; // won't be used but prevents compiler from complaining.	×
330	final String __message = "the `secondaryFiles` field is not valid because:";	×
331	__errors.add(new ValidationException(__message, e));	×
332	}	1✔
333
334	} else {
335	secondaryFiles = null;	1✔
336	}
337	java.util.Optional<Boolean> streamable;
338
339	if (__doc.containsKey("streamable")) {	1✔
340	try {
341	streamable =	×
342	LoaderInstances
343	.optional_BooleanInstance
344	.loadField(__doc.get("streamable"), __baseUri, __loadingOptions);	×
345	} catch (ValidationException e) {	×
346	streamable = null; // won't be used but prevents compiler from complaining.	×
347	final String __message = "the `streamable` field is not valid because:";	×
348	__errors.add(new ValidationException(__message, e));	×
349	}	×
350
351	} else {
352	streamable = null;	1✔
353	}
354	Object doc;
355
356	if (__doc.containsKey("doc")) {	1✔
357	try {
358	doc =	1✔
359	LoaderInstances
360	.union_of_NullInstance_or_StringInstance_or_array_of_StringInstance
361	.loadField(__doc.get("doc"), __baseUri, __loadingOptions);	1✔
362	} catch (ValidationException e) {	×
363	doc = null; // won't be used but prevents compiler from complaining.	×
364	final String __message = "the `doc` field is not valid because:";	×
365	__errors.add(new ValidationException(__message, e));	×
366	}	1✔
367
368	} else {
369	doc = null;	1✔
370	}
371	Object format;
372
373	if (__doc.containsKey("format")) {	1✔
374	try {
375	format =	×
376	LoaderInstances
377	.uri_union_of_NullInstance_or_StringInstance_or_array_of_StringInstance_or_ExpressionLoader_True_False_None_True
378	.loadField(__doc.get("format"), __baseUri, __loadingOptions);	×
379	} catch (ValidationException e) {	×
380	format = null; // won't be used but prevents compiler from complaining.	×
381	final String __message = "the `format` field is not valid because:";	×
382	__errors.add(new ValidationException(__message, e));	×
383	}	×
384
385	} else {
386	format = null;	1✔
387	}
388	java.util.Optional<Boolean> loadContents;
389
390	if (__doc.containsKey("loadContents")) {	1✔
391	try {
392	loadContents =	1✔
393	LoaderInstances
394	.optional_BooleanInstance
395	.loadField(__doc.get("loadContents"), __baseUri, __loadingOptions);	1✔
396	} catch (ValidationException e) {	×
397	loadContents = null; // won't be used but prevents compiler from complaining.	×
398	final String __message = "the `loadContents` field is not valid because:";	×
399	__errors.add(new ValidationException(__message, e));	×
400	}	1✔
401
402	} else {
403	loadContents = null;	1✔
404	}
405	java.util.Optional<LoadListingEnum> loadListing;
406
407	if (__doc.containsKey("loadListing")) {	1✔
408	try {
409	loadListing =	1✔
410	LoaderInstances
411	.optional_LoadListingEnum
412	.loadField(__doc.get("loadListing"), __baseUri, __loadingOptions);	1✔
413	} catch (ValidationException e) {	×
414	loadListing = null; // won't be used but prevents compiler from complaining.	×
415	final String __message = "the `loadListing` field is not valid because:";	×
416	__errors.add(new ValidationException(__message, e));	×
417	}	1✔
418
419	} else {
420	loadListing = null;	1✔
421	}
422	java.util.Optional<Object> default_;
423
424	if (__doc.containsKey("default")) {	1✔
425	try {
426	default_ =	1✔
427	LoaderInstances
428	.optional_CWLObjectType
429	.loadField(__doc.get("default"), __baseUri, __loadingOptions);	1✔
430	} catch (ValidationException e) {	×
431	default_ = null; // won't be used but prevents compiler from complaining.	×
432	final String __message = "the `default` field is not valid because:";	×
433	__errors.add(new ValidationException(__message, e));	×
434	}	1✔
435
436	} else {
437	default_ = null;	1✔
438	}
439	Object type;
440	try {
441	type =	1✔
442	LoaderInstances
443	.typedsl_union_of_CWLType_or_InputRecordSchema_or_InputEnumSchema_or_InputArraySchema_or_StringInstance_or_array_of_union_of_CWLType_or_InputRecordSchema_or_InputEnumSchema_or_InputArraySchema_or_StringInstance_2
444	.loadField(__doc.get("type"), __baseUri, __loadingOptions);	1✔
445	} catch (ValidationException e) {	×
446	type = null; // won't be used but prevents compiler from complaining.	×
447	final String __message = "the `type` field is not valid because:";	×
448	__errors.add(new ValidationException(__message, e));	×
449	}	1✔
450	java.util.Optional<InputBinding> inputBinding;
451
452	if (__doc.containsKey("inputBinding")) {	1✔
453	try {
454	inputBinding =	×
455	LoaderInstances
456	.optional_InputBinding
457	.loadField(__doc.get("inputBinding"), __baseUri, __loadingOptions);	×
458	} catch (ValidationException e) {	×
459	inputBinding = null; // won't be used but prevents compiler from complaining.	×
460	final String __message = "the `inputBinding` field is not valid because:";	×
461	__errors.add(new ValidationException(__message, e));	×
462	}	×
463
464	} else {
465	inputBinding = null;	1✔
466	}
467	if (!__errors.isEmpty()) {	1✔
468	throw new ValidationException("Trying 'RecordField'", __errors);	×
469	}
470	this.label = (java.util.Optional<String>) label;	1✔
471	this.secondaryFiles = (Object) secondaryFiles;	1✔
472	this.streamable = (java.util.Optional<Boolean>) streamable;	1✔
473	this.doc = (Object) doc;	1✔
474	this.id = (String) id;	1✔
475	this.format = (Object) format;	1✔
476	this.loadContents = (java.util.Optional<Boolean>) loadContents;	1✔
477	this.loadListing = (java.util.Optional<LoadListingEnum>) loadListing;	1✔
478	this.default_ = (java.util.Optional<Object>) default_;	1✔
479	this.type = (Object) type;	1✔
480	this.inputBinding = (java.util.Optional<InputBinding>) inputBinding;	1✔
481	for (String field:__doc.keySet()) {	1✔
482	if (!attrs.contains(field)) {	1✔
483	if (field.contains(":")) {	×
484	String expanded_field = __loadingOptions.expandUrl(field, "", false, false, null);	×
485	extensionFields_.put(expanded_field, __doc.get(field));	×
486	}
487	}
488	}	1✔
489	}	1✔
490	private java.util.List<String> attrs = java.util.Arrays.asList("label", "secondaryFiles", "streamable", "doc", "id", "format", "loadContents", "loadListing", "default", "type", "inputBinding");	1✔
491	}

common-workflow-language / cwljava / #421

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