20268226543

Committed 16 Dec 2025 12:39PM UTC coverage: 14.107% (-1.3%) from 15.358%

Build # 20268226543

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push

github

Committed by

ashleycaselli

Commit Message

refactor: replace VocabUtils with the ones defined in the nanopub-java library

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0.0

src/main/java/com/knowledgepixels/nanodash/component/ReadonlyItem.java

package com.knowledgepixels.nanodash.component;

import com.knowledgepixels.nanodash.LocalUri;
import com.knowledgepixels.nanodash.RestrictedChoice;
import com.knowledgepixels.nanodash.User;
import com.knowledgepixels.nanodash.Utils;
import com.knowledgepixels.nanodash.component.StatementItem.RepetitionGroup;
import com.knowledgepixels.nanodash.page.ExplorePage;
import com.knowledgepixels.nanodash.page.UserPage;
import com.knowledgepixels.nanodash.template.ContextType;
import com.knowledgepixels.nanodash.template.Template;
import com.knowledgepixels.nanodash.template.UnificationException;
import net.trustyuri.TrustyUriUtils;
import org.apache.commons.codec.Charsets;
import org.apache.wicket.behavior.AttributeAppender;
import org.apache.wicket.markup.html.basic.Label;
import org.apache.wicket.markup.html.link.ExternalLink;
import org.apache.wicket.model.IModel;
import org.apache.wicket.model.Model;
import org.apache.wicket.validation.IValidatable;
import org.apache.wicket.validation.IValidator;
import org.apache.wicket.validation.Validatable;
import org.apache.wicket.validation.ValidationError;
import org.eclipse.rdf4j.common.net.ParsedIRI;
import org.eclipse.rdf4j.model.IRI;
import org.eclipse.rdf4j.model.Literal;
import org.eclipse.rdf4j.model.Value;
import org.eclipse.rdf4j.model.ValueFactory;
import org.eclipse.rdf4j.model.impl.SimpleValueFactory;
import org.eclipse.rdf4j.model.util.Literals;
import org.eclipse.rdf4j.model.vocabulary.XSD;
import org.nanopub.Nanopub;
import org.nanopub.NanopubUtils;
import org.nanopub.SimpleCreatorPattern;
import org.nanopub.vocabulary.NTEMPLATE;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

import java.net.URISyntaxException;
import java.net.URLEncoder;
import java.util.HashMap;
import java.util.Map;

/**
 * ReadonlyItem is a component that displays a read-only item in the form.
 */
public class ReadonlyItem extends AbstractContextComponent {

    private static final int LONG_LITERAL_LENGTH = 100;
    private static final Logger logger = LoggerFactory.getLogger(ReadonlyItem.class);
    private static final ValueFactory vf = SimpleValueFactory.getInstance();

    private IModel<String> model;
    private String prefix;
    private ExternalLink linkComp;
    private Label extraComp, languageComp, datatypeComp;
    private IModel<String> extraModel, languageModel, datatypeModel;
    private IRI iri;
    private RestrictedChoice restrictedChoice;
    private Label showMoreLabelLiteral, showMoreLabelHTML;
    private final Template template;

    /**
     * Constructor for ReadonlyItem.
     *
     * @param id              the component id
     * @param parentId        the parent id (e.g., "subj", "obj")
     * @param iriP            the IRI of the item
     * @param statementPartId the statement part ID
     * @param rg              the repetition group
     */
    public ReadonlyItem(String id, String parentId, final IRI iriP, IRI statementPartId, final RepetitionGroup rg) {
        super(id, rg.getContext());
        this.iri = iriP;
        template = context.getTemplate();
        model = (IModel<String>) context.getComponentModels().get(iri);
        if (model == null) {
            model = Model.of("");
            context.getComponentModels().put(iri, model);
        }
        String postfix = Utils.getUriPostfix(iri);
        if (context.hasParam(postfix)) {
            model.setObject(context.getParam(postfix));
        }

        final Map<String, String> foafNameMap;
        if (context.getExistingNanopub() == null) {
            foafNameMap = new HashMap<>();
        } else {
            foafNameMap = Utils.getFoafNameMap(context.getExistingNanopub());
        }

        prefix = template.getPrefix(iri);
        if (prefix == null) prefix = "";
        if (template.isRestrictedChoicePlaceholder(iri)) {
            restrictedChoice = new RestrictedChoice(iri, context);
        }
        add(new Label("prefix", new Model<String>() {

            @Override
            public String getObject() {
                String prefixLabel = template.getPrefixLabel(iri);
                String v = getFullValue();
                if (prefixLabel == null || User.isUser(v) || foafNameMap.containsKey(v)) {
                    return "";
                } else {
                    if (!prefixLabel.isEmpty() && parentId.equals("subj") && !prefixLabel.matches("https?://.*")) {
                        // Capitalize first letter of label if at subject position:
                        prefixLabel = prefixLabel.substring(0, 1).toUpperCase() + prefixLabel.substring(1);
                    }
                    return prefixLabel;
                }
            }

        }));

        linkComp = new ExternalLink("link", new Model<String>() {

            @Override
            public String getObject() {
                String obj = getFullValue();
                if (obj == null) return "";
                if (obj.equals(LocalUri.of("nanopub").stringValue())) {
                    if (context.getExistingNanopub() != null) {
                        obj = context.getExistingNanopub().getUri().stringValue();
                        return ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);
                    } else {
                        return "";
                    }
                } else if (obj.equals(LocalUri.of("assertion").stringValue())) {
                    if (context.getExistingNanopub() != null) {
                        obj = context.getExistingNanopub().getAssertionUri().stringValue();
                        return ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);
                    } else {
                        return "";
                    }
                } else if (User.isUser(obj)) {
                    return UserPage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);
                } else if (obj.matches("https?://.+")) {
                    return ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);
                } else {
                    return "";
                }
            }

        }, new Model<String>() {

            @Override
            public String getObject() {
                String obj = getFullValue();
                if (obj != null && obj.matches("https?://.+")) {
                    IRI objIri = vf.createIRI(obj);
                    if (iri.equals(NTEMPLATE.CREATOR_PLACEHOLDER)) {
                        // TODO We might want to introduce a "(you)" flag here at some point
                        return User.getShortDisplayName(objIri);
                    } else if (isAssertionValue(objIri)) {
                        if (context.getType() == ContextType.ASSERTION) {
                            return "this assertion";
                        } else {
                            return "the assertion above";
                        }
                    } else if (isNanopubValue(objIri)) {
                        return "this nanopublication";
                    } else if (User.isUser(obj)) {
                        return User.getShortDisplayName(objIri);
                    } else if (foafNameMap.containsKey(obj)) {
                        return foafNameMap.get(obj);
                    }
                    return getLabelString(objIri);
                }
                return obj;
            }

        });
        if (template.isIntroducedResource(iri) || template.isEmbeddedResource(iri)) {
            linkComp.add(AttributeAppender.append("class", "introduced"));
        }
        add(linkComp);
        add(new Label("description", new Model<String>() {

            @Override
            public String getObject() {
                String obj = getFullValue();
                if (obj != null && obj.matches("https?://.+")) {
                    IRI objIri = vf.createIRI(obj);
                    if (isAssertionValue(objIri)) {
                        return "This is the identifier for the assertion of this nanopublication.";
                    } else if (isNanopubValue(objIri)) {
                        return "This is the identifier for this whole nanopublication.";
                    } else if (context.isReadOnly() && obj.startsWith(context.getExistingNanopub().getUri().stringValue())) {
                        return "This is a local identifier minted within the nanopublication.";
                    }
                    String labelString = getLabelString(objIri);
                    String description = "";
                    if (labelString.contains(" - ")) description = labelString.replaceFirst("^.* - ", "");
                    return description;
                } else if (obj != null && obj.startsWith("\"")) {
                    return "(this is a literal)";
                }
                return "";
            }

        }));
        Model<String> uriModel = new Model<String>() {

            @Override
            public String getObject() {
                String obj = getFullValue();
                if (obj != null && obj.startsWith("\"")) return "";
                if (isAssertionValue(obj)) {
                    return getAssertionValue();
                } else if (isNanopubValue(obj)) {
                    return getNanopubValue();
                }
                return obj;
            }

        };
        add(Utils.getUriLink("uri", uriModel));
        extraModel = Model.of("");
        extraComp = new Label("extra", extraModel);
        extraComp.setVisible(false);
        add(extraComp);
        languageModel = Model.of("");
        languageComp = new Label("language", languageModel);
        languageComp.setVisible(false);
        add(languageComp);
        datatypeModel = Model.of("");
        datatypeComp = new Label("datatype", datatypeModel);
        datatypeComp.setVisible(false);
        add(datatypeComp);

        showMoreLabelLiteral = new Label("show-more-literal", "");
        add(showMoreLabelLiteral);
        showMoreLabelLiteral.setVisible(false);

        showMoreLabelHTML = new Label("show-more-html", "");
        add(showMoreLabelHTML);
        showMoreLabelHTML.setVisible(false);
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public void fillFinished() {
        String obj = getFullValue();
        if (obj != null) {
            if (isAssertionValue(obj)) {
                linkComp.add(new AttributeAppender("class", "this-assertion"));
            } else if (isNanopubValue(obj)) {
                linkComp.add(new AttributeAppender("class", "this-nanopub"));
            } else if (context.getExistingNanopub() != null) {
                Nanopub np = context.getExistingNanopub();
                if (NanopubUtils.getIntroducedIriIds(np).contains(obj) || NanopubUtils.getEmbeddedIriIds(np).contains(obj)) {
                    linkComp.add(AttributeAppender.append("class", "introduced"));
                }
            }
        }
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public void finalizeValues() {
    }

    private String getLabelString(IRI iri) {
        if (template.getLabel(iri) != null) {
            return template.getLabel(iri).replaceFirst(" - .*$", "");
        } else if (context.getLabel(iri) != null) {
            return context.getLabel(iri).replaceFirst(" - .*$", "");
        } else {
            return Utils.getShortNameFromURI(iri.stringValue());
        }
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public void removeFromContext() {
        // Nothing to be done here.
    }

    private String getFullValue() {
        String s = model.getObject();
        if (s == null) return null;
        if (template.isAutoEscapePlaceholder(iri)) {
            s = Utils.urlEncode(s);
        }
        if (!prefix.isEmpty()) {
            s = prefix + s;
        }
        return s;
    }

    private boolean isNanopubValue(Object obj) {
        if (obj == null) return false;
        if (obj.toString().equals(LocalUri.of("nanopub").stringValue())) return true;
        if (context.getExistingNanopub() == null) return false;
        return obj.toString().equals(context.getExistingNanopub().getUri().stringValue());
    }

    private String getNanopubValue() {
        if (context.getExistingNanopub() != null) {
            return context.getExistingNanopub().getUri().stringValue();
        } else {
            return LocalUri.of("nanopub").stringValue();
        }
    }

    private boolean isAssertionValue(Object obj) {
        if (obj == null) return false;
        if (obj.toString().equals(LocalUri.of("assertion").stringValue())) return true;
        if (context.getExistingNanopub() == null) return false;
        return obj.toString().equals(context.getExistingNanopub().getAssertionUri().stringValue());
    }

    private String getAssertionValue() {
        if (context.getExistingNanopub() != null) {
            return context.getExistingNanopub().getAssertionUri().stringValue();
        } else {
            return LocalUri.of("assertion").stringValue();
        }
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public boolean isUnifiableWith(Value v) {
        if (v == null) return true;
        if (v instanceof IRI) {
            String vs = v.stringValue();
            if (vs.equals(LocalUri.of("nanopub").stringValue())) {
                vs = getNanopubValue();
            } else if (vs.equals(LocalUri.of("assertion").stringValue())) {
                vs = getAssertionValue();
            }
            if (vs.startsWith(prefix)) vs = vs.substring(prefix.length());
//                        if (Utils.isLocalURI(vs)) vs = vs.replaceFirst("^" + LocalUri.PREFIX, "");
            if (template.isAutoEscapePlaceholder(iri)) {
                vs = Utils.urlDecode(vs);
            }
            Validatable<String> validatable = new Validatable<>(vs);
//                        if (template.isLocalResource(iri) && !Utils.isUriPostfix(vs)) {
//                                vs = Utils.getUriPostfix(vs);
//                        }
            new Validator().validate(validatable);
            if (!validatable.isValid()) {
                return false;
            }
            if (model.getObject().isEmpty()) {
                return true;
            }
            return vs.equals(model.getObject());
        } else if (v instanceof Literal vL) {
            if (template.getRegex(iri) != null && !v.stringValue().matches(template.getRegex(iri))) {
                return false;
            }
            String languagetag = template.getLanguageTag(iri);
            IRI datatype = template.getDatatype(iri);
            if (languagetag != null) {
                if (vL.getLanguage().isEmpty() || !Literals.normalizeLanguageTag(vL.getLanguage().get()).equals(languagetag)) {
                    return false;
                }
            } else if (datatype != null) {
                if (!vL.getDatatype().equals(datatype)) {
                    return false;
                }
            }
            if (linkComp.getDefaultModelObject() == null || linkComp.getDefaultModelObject().toString().isEmpty()) {
                return true;
            }
            return linkComp.getDefaultModelObject().equals("\"" + v.stringValue() + "\"");
        }
        return false;
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public void unifyWith(Value v) throws UnificationException {
        if (v == null) return;
        String vs = v.stringValue();
        if (!isUnifiableWith(v)) {
            logger.error("Cannot unify {}", v);
            throw new UnificationException(vs);
        }
        if (v instanceof IRI) {
            if (vs.equals(LocalUri.of("nanopub").stringValue())) {
                vs = getNanopubValue();
            } else if (vs.equals(LocalUri.of("assertion").stringValue())) {
                vs = getAssertionValue();
            }
            if (!prefix.isEmpty() && vs.startsWith(prefix)) {
                vs = vs.substring(prefix.length());
                // With read-only items, we don't need preliminary local identifiers:
//                        } else if (Utils.isLocalURI(vs)) {
//                                vs = vs.replaceFirst("^" + LocalUri.PREFIX, "");
//                        } else if (template.isLocalResource(iri) && !Utils.isUriPostfix(vs)) {
//                                vs = Utils.getUriPostfix(vs);
            }
            if (template.isAutoEscapePlaceholder(iri)) {
                vs = Utils.urlDecode(vs);
            }
            model.setObject(vs);
        } else if (v instanceof Literal vL) {
            if (vs.length() >= LONG_LITERAL_LENGTH) {
                linkComp.add(AttributeAppender.append("class", "long-literal collapsed"));
                showMoreLabelLiteral.setVisible(true);
            }
            if (vL.getLanguage().isPresent()) {
                model.setObject("\"" + vs + "\"");
                languageModel.setObject("(" + Literals.normalizeLanguageTag(vL.getLanguage().get()) + ")");
                languageComp.setVisible(true);
            } else if (!vL.getDatatype().equals(XSD.STRING)) {
                model.setObject("\"" + vs + "\"");
                datatypeModel.setObject("(" + vL.getDatatype().stringValue().replace(XSD.NAMESPACE, "xsd:") + ")");
                datatypeComp.setVisible(true);
            } else {
                model.setObject("\"" + vs + "\"");
            }
            if (Utils.looksLikeHtml(vs)) {
                linkComp.setVisible(false);
                extraModel.setObject(Utils.sanitizeHtml(vs));
                extraComp.setEscapeModelStrings(false);
                extraComp.setVisible(true);
                showMoreLabelLiteral.setVisible(false);
                showMoreLabelHTML.setVisible(true);
            }
        }
    }

    /**
     * Validator class for validating the input.
     */
    protected class Validator extends InvalidityHighlighting implements IValidator<String> {

        /**
         * Default constructor for Validator.
         */
        public Validator() {
        }

        @Override
        public void validate(IValidatable<String> s) {
            String sv = s.getValue();
            String p = prefix;
            if (template.isAutoEscapePlaceholder(iri)) {
                sv = Utils.urlEncode(sv);
            }
            if (sv.matches("https?://.+")) {
                p = "";
            } else if (sv.contains(":")) {
                s.error(new ValidationError("Colon character is not allowed in postfix"));
            }
            String iriString = p + sv;
            if (iriString.matches("[^:# ]+")) {
                p = LocalUri.PREFIX;
                iriString = p + sv;
            }
            try {
                ParsedIRI piri = new ParsedIRI(iriString);
                if (!piri.isAbsolute()) {
                    s.error(new ValidationError("IRI not well-formed"));
                }
                if (p.isEmpty() && !Utils.isLocalURI(sv) && !sv.matches("https?://.+")) {
                    s.error(new ValidationError("Only http(s):// IRIs are allowed here"));
                }
            } catch (URISyntaxException ex) {
                s.error(new ValidationError("IRI not well-formed"));
            }
            String regex = template.getRegex(iri);
            if (regex != null) {
                if (!sv.matches(regex)) {
                    s.error(new ValidationError("Value '" + sv + "' doesn't match the pattern '" + regex + "'"));
                }
            }
            if (template.isRestrictedChoicePlaceholder(iri)) {
                if (!restrictedChoice.getPossibleValues().contains(iriString) && !restrictedChoice.hasPossibleRefValues()) {
                    // not checking the possible ref values can overgenerate, but normally works
                    s.error(new ValidationError("Invalid choice"));
                }
            }
            if (template.isExternalUriPlaceholder(iri)) {
                if (!iriString.matches("https?://.+")) {
                    s.error(new ValidationError("Not an external IRI"));
                }
            }
            if (template.isTrustyUriPlaceholder(iri)) {
                if (!TrustyUriUtils.isPotentialTrustyUri(iriString)) {
                    s.error(new ValidationError("Not a trusty URI"));
                }
            }
            if (iri.equals(NTEMPLATE.CREATOR_PLACEHOLDER) && context.getExistingNanopub() != null) {
                boolean found = false;
                for (IRI creator : SimpleCreatorPattern.getCreators(context.getExistingNanopub())) {
                    if (creator.stringValue().equals(iriString)) {
                        found = true;
                        break;
                    }
                }
                if (!found) {
                    s.error(new ValidationError("Not a creator of nanopub"));
                }
            }
        }

    }

    /**
     * <p>toString.</p>
     *
     * @return a {@link java.lang.String} object
     */
    public String toString() {
        return "[read-only IRI item: " + iri + "]";
    }

}

1	package com.knowledgepixels.nanodash.component;
2
3	import com.knowledgepixels.nanodash.LocalUri;
4	import com.knowledgepixels.nanodash.RestrictedChoice;
5	import com.knowledgepixels.nanodash.User;
6	import com.knowledgepixels.nanodash.Utils;
7	import com.knowledgepixels.nanodash.component.StatementItem.RepetitionGroup;
8	import com.knowledgepixels.nanodash.page.ExplorePage;
9	import com.knowledgepixels.nanodash.page.UserPage;
10	import com.knowledgepixels.nanodash.template.ContextType;
11	import com.knowledgepixels.nanodash.template.Template;
12	import com.knowledgepixels.nanodash.template.UnificationException;
13	import net.trustyuri.TrustyUriUtils;
14	import org.apache.commons.codec.Charsets;
15	import org.apache.wicket.behavior.AttributeAppender;
16	import org.apache.wicket.markup.html.basic.Label;
17	import org.apache.wicket.markup.html.link.ExternalLink;
18	import org.apache.wicket.model.IModel;
19	import org.apache.wicket.model.Model;
20	import org.apache.wicket.validation.IValidatable;
21	import org.apache.wicket.validation.IValidator;
22	import org.apache.wicket.validation.Validatable;
23	import org.apache.wicket.validation.ValidationError;
24	import org.eclipse.rdf4j.common.net.ParsedIRI;
25	import org.eclipse.rdf4j.model.IRI;
26	import org.eclipse.rdf4j.model.Literal;
27	import org.eclipse.rdf4j.model.Value;
28	import org.eclipse.rdf4j.model.ValueFactory;
29	import org.eclipse.rdf4j.model.impl.SimpleValueFactory;
30	import org.eclipse.rdf4j.model.util.Literals;
31	import org.eclipse.rdf4j.model.vocabulary.XSD;
32	import org.nanopub.Nanopub;
33	import org.nanopub.NanopubUtils;
34	import org.nanopub.SimpleCreatorPattern;
35	import org.nanopub.vocabulary.NTEMPLATE;
36	import org.slf4j.Logger;
37	import org.slf4j.LoggerFactory;
38
39	import java.net.URISyntaxException;
40	import java.net.URLEncoder;
41	import java.util.HashMap;
42	import java.util.Map;
43
44	/**
45	* ReadonlyItem is a component that displays a read-only item in the form.
46	*/
47	public class ReadonlyItem extends AbstractContextComponent {
48
49	private static final int LONG_LITERAL_LENGTH = 100;
50	private static final Logger logger = LoggerFactory.getLogger(ReadonlyItem.class);	×
51	private static final ValueFactory vf = SimpleValueFactory.getInstance();	×
52
53	private IModel<String> model;
54	private String prefix;
55	private ExternalLink linkComp;
56	private Label extraComp, languageComp, datatypeComp;
57	private IModel<String> extraModel, languageModel, datatypeModel;
58	private IRI iri;
59	private RestrictedChoice restrictedChoice;
60	private Label showMoreLabelLiteral, showMoreLabelHTML;
61	private final Template template;
62
63	/**
64	* Constructor for ReadonlyItem.
65	*
66	* @param id the component id
67	* @param parentId the parent id (e.g., "subj", "obj")
68	* @param iriP the IRI of the item
69	* @param statementPartId the statement part ID
70	* @param rg the repetition group
71	*/
72	public ReadonlyItem(String id, String parentId, final IRI iriP, IRI statementPartId, final RepetitionGroup rg) {
73	super(id, rg.getContext());	×
74	this.iri = iriP;	×
75	template = context.getTemplate();	×
76	model = (IModel<String>) context.getComponentModels().get(iri);	×
77	if (model == null) {	×
78	model = Model.of("");	×
79	context.getComponentModels().put(iri, model);	×
80	}
81	String postfix = Utils.getUriPostfix(iri);	×
82	if (context.hasParam(postfix)) {	×
83	model.setObject(context.getParam(postfix));	×
84	}
85
86	final Map<String, String> foafNameMap;
87	if (context.getExistingNanopub() == null) {	×
88	foafNameMap = new HashMap<>();	×
89	} else {
90	foafNameMap = Utils.getFoafNameMap(context.getExistingNanopub());	×
91	}
92
93	prefix = template.getPrefix(iri);	×
94	if (prefix == null) prefix = "";	×
95	if (template.isRestrictedChoicePlaceholder(iri)) {	×
96	restrictedChoice = new RestrictedChoice(iri, context);	×
97	}
98	add(new Label("prefix", new Model<String>() {	×
99
100	@Override
101	public String getObject() {
102	String prefixLabel = template.getPrefixLabel(iri);	×
103	String v = getFullValue();	×
104	if (prefixLabel == null \|\| User.isUser(v) \|\| foafNameMap.containsKey(v)) {	×
105	return "";	×
106	} else {
107	if (!prefixLabel.isEmpty() && parentId.equals("subj") && !prefixLabel.matches("https?://.*")) {	×
108	// Capitalize first letter of label if at subject position:
109	prefixLabel = prefixLabel.substring(0, 1).toUpperCase() + prefixLabel.substring(1);	×
110	}
111	return prefixLabel;	×
112	}
113	}
114
115	}));
116
117	linkComp = new ExternalLink("link", new Model<String>() {	×
118
119	@Override
120	public String getObject() {
121	String obj = getFullValue();	×
122	if (obj == null) return "";	×
123	if (obj.equals(LocalUri.of("nanopub").stringValue())) {	×
124	if (context.getExistingNanopub() != null) {	×
125	obj = context.getExistingNanopub().getUri().stringValue();	×
126	return ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);	×
127	} else {
128	return "";	×
129	}
130	} else if (obj.equals(LocalUri.of("assertion").stringValue())) {	×
131	if (context.getExistingNanopub() != null) {	×
132	obj = context.getExistingNanopub().getAssertionUri().stringValue();	×
133	return ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);	×
134	} else {
135	return "";	×
136	}
137	} else if (User.isUser(obj)) {	×
138	return UserPage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);	×
139	} else if (obj.matches("https?://.+")) {	×
140	return ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);	×
141	} else {
142	return "";	×
143	}
144	}
145
146	}, new Model<String>() {	×
147
148	@Override
149	public String getObject() {
150	String obj = getFullValue();	×
151	if (obj != null && obj.matches("https?://.+")) {	×
152	IRI objIri = vf.createIRI(obj);	×
153	if (iri.equals(NTEMPLATE.CREATOR_PLACEHOLDER)) {	×
154	// TODO We might want to introduce a "(you)" flag here at some point
155	return User.getShortDisplayName(objIri);	×
156	} else if (isAssertionValue(objIri)) {	×
157	if (context.getType() == ContextType.ASSERTION) {	×
158	return "this assertion";	×
159	} else {
160	return "the assertion above";	×
161	}
162	} else if (isNanopubValue(objIri)) {	×
163	return "this nanopublication";	×
164	} else if (User.isUser(obj)) {	×
165	return User.getShortDisplayName(objIri);	×
166	} else if (foafNameMap.containsKey(obj)) {	×
167	return foafNameMap.get(obj);	×
168	}
169	return getLabelString(objIri);	×
170	}
171	return obj;	×
172	}
173
174	});
175	if (template.isIntroducedResource(iri) \|\| template.isEmbeddedResource(iri)) {	×
176	linkComp.add(AttributeAppender.append("class", "introduced"));	×
177	}
178	add(linkComp);	×
179	add(new Label("description", new Model<String>() {	×
180
181	@Override
182	public String getObject() {
183	String obj = getFullValue();	×
184	if (obj != null && obj.matches("https?://.+")) {	×
185	IRI objIri = vf.createIRI(obj);	×
186	if (isAssertionValue(objIri)) {	×
187	return "This is the identifier for the assertion of this nanopublication.";	×
188	} else if (isNanopubValue(objIri)) {	×
189	return "This is the identifier for this whole nanopublication.";	×
190	} else if (context.isReadOnly() && obj.startsWith(context.getExistingNanopub().getUri().stringValue())) {	×
191	return "This is a local identifier minted within the nanopublication.";	×
192	}
193	String labelString = getLabelString(objIri);	×
194	String description = "";	×
195	if (labelString.contains(" - ")) description = labelString.replaceFirst("^.* - ", "");	×
196	return description;	×
197	} else if (obj != null && obj.startsWith("\"")) {	×
198	return "(this is a literal)";	×
199	}
200	return "";	×
201	}
202
203	}));
204	Model<String> uriModel = new Model<String>() {	×
205
206	@Override
207	public String getObject() {
208	String obj = getFullValue();	×
209	if (obj != null && obj.startsWith("\"")) return "";	×
210	if (isAssertionValue(obj)) {	×
211	return getAssertionValue();	×
212	} else if (isNanopubValue(obj)) {	×
213	return getNanopubValue();	×
214	}
215	return obj;	×
216	}
217
218	};
219	add(Utils.getUriLink("uri", uriModel));	×
220	extraModel = Model.of("");	×
221	extraComp = new Label("extra", extraModel);	×
222	extraComp.setVisible(false);	×
223	add(extraComp);	×
224	languageModel = Model.of("");	×
225	languageComp = new Label("language", languageModel);	×
226	languageComp.setVisible(false);	×
227	add(languageComp);	×
228	datatypeModel = Model.of("");	×
229	datatypeComp = new Label("datatype", datatypeModel);	×
230	datatypeComp.setVisible(false);	×
231	add(datatypeComp);	×
232
233	showMoreLabelLiteral = new Label("show-more-literal", "");	×
234	add(showMoreLabelLiteral);	×
235	showMoreLabelLiteral.setVisible(false);	×
236
237	showMoreLabelHTML = new Label("show-more-html", "");	×
238	add(showMoreLabelHTML);	×
239	showMoreLabelHTML.setVisible(false);	×
240	}	×
241
242	/**
243	* {@inheritDoc}
244	*/
245	@Override
246	public void fillFinished() {
247	String obj = getFullValue();	×
248	if (obj != null) {	×
249	if (isAssertionValue(obj)) {	×
250	linkComp.add(new AttributeAppender("class", "this-assertion"));	×
251	} else if (isNanopubValue(obj)) {	×
252	linkComp.add(new AttributeAppender("class", "this-nanopub"));	×
253	} else if (context.getExistingNanopub() != null) {	×
254	Nanopub np = context.getExistingNanopub();	×
255	if (NanopubUtils.getIntroducedIriIds(np).contains(obj) \|\| NanopubUtils.getEmbeddedIriIds(np).contains(obj)) {	×
256	linkComp.add(AttributeAppender.append("class", "introduced"));	×
257	}
258	}
259	}
260	}	×
261
262	/**
263	* {@inheritDoc}
264	*/
265	@Override
266	public void finalizeValues() {
267	}	×
268
269	private String getLabelString(IRI iri) {
270	if (template.getLabel(iri) != null) {	×
271	return template.getLabel(iri).replaceFirst(" - .*$", "");	×
272	} else if (context.getLabel(iri) != null) {	×
273	return context.getLabel(iri).replaceFirst(" - .*$", "");	×
274	} else {
275	return Utils.getShortNameFromURI(iri.stringValue());	×
276	}
277	}
278
279	/**
280	* {@inheritDoc}
281	*/
282	@Override
283	public void removeFromContext() {
284	// Nothing to be done here.
285	}	×
286
287	private String getFullValue() {
288	String s = model.getObject();	×
289	if (s == null) return null;	×
290	if (template.isAutoEscapePlaceholder(iri)) {	×
291	s = Utils.urlEncode(s);	×
292	}
293	if (!prefix.isEmpty()) {	×
294	s = prefix + s;	×
295	}
296	return s;	×
297	}
298
299	private boolean isNanopubValue(Object obj) {
300	if (obj == null) return false;	×
301	if (obj.toString().equals(LocalUri.of("nanopub").stringValue())) return true;	×
302	if (context.getExistingNanopub() == null) return false;	×
303	return obj.toString().equals(context.getExistingNanopub().getUri().stringValue());	×
304	}
305
306	private String getNanopubValue() {
307	if (context.getExistingNanopub() != null) {	×
308	return context.getExistingNanopub().getUri().stringValue();	×
309	} else {
310	return LocalUri.of("nanopub").stringValue();	×
311	}
312	}
313
314	private boolean isAssertionValue(Object obj) {
315	if (obj == null) return false;	×
316	if (obj.toString().equals(LocalUri.of("assertion").stringValue())) return true;	×
317	if (context.getExistingNanopub() == null) return false;	×
318	return obj.toString().equals(context.getExistingNanopub().getAssertionUri().stringValue());	×
319	}
320
321	private String getAssertionValue() {
322	if (context.getExistingNanopub() != null) {	×
323	return context.getExistingNanopub().getAssertionUri().stringValue();	×
324	} else {
325	return LocalUri.of("assertion").stringValue();	×
326	}
327	}
328
329	/**
330	* {@inheritDoc}
331	*/
332	@Override
333	public boolean isUnifiableWith(Value v) {
334	if (v == null) return true;	×
335	if (v instanceof IRI) {	×
336	String vs = v.stringValue();	×
337	if (vs.equals(LocalUri.of("nanopub").stringValue())) {	×
338	vs = getNanopubValue();	×
339	} else if (vs.equals(LocalUri.of("assertion").stringValue())) {	×
340	vs = getAssertionValue();	×
341	}
342	if (vs.startsWith(prefix)) vs = vs.substring(prefix.length());	×
343	// if (Utils.isLocalURI(vs)) vs = vs.replaceFirst("^" + LocalUri.PREFIX, "");
344	if (template.isAutoEscapePlaceholder(iri)) {	×
345	vs = Utils.urlDecode(vs);	×
346	}
347	Validatable<String> validatable = new Validatable<>(vs);	×
348	// if (template.isLocalResource(iri) && !Utils.isUriPostfix(vs)) {
349	// vs = Utils.getUriPostfix(vs);
350	// }
351	new Validator().validate(validatable);	×
352	if (!validatable.isValid()) {	×
353	return false;	×
354	}
355	if (model.getObject().isEmpty()) {	×
356	return true;	×
357	}
358	return vs.equals(model.getObject());	×
359	} else if (v instanceof Literal vL) {	×
360	if (template.getRegex(iri) != null && !v.stringValue().matches(template.getRegex(iri))) {	×
361	return false;	×
362	}
363	String languagetag = template.getLanguageTag(iri);	×
364	IRI datatype = template.getDatatype(iri);	×
365	if (languagetag != null) {	×
366	if (vL.getLanguage().isEmpty() \|\| !Literals.normalizeLanguageTag(vL.getLanguage().get()).equals(languagetag)) {	×
367	return false;	×
368	}
369	} else if (datatype != null) {	×
370	if (!vL.getDatatype().equals(datatype)) {	×
371	return false;	×
372	}
373	}
374	if (linkComp.getDefaultModelObject() == null \|\| linkComp.getDefaultModelObject().toString().isEmpty()) {	×
375	return true;	×
376	}
377	return linkComp.getDefaultModelObject().equals("\"" + v.stringValue() + "\"");	×
378	}
379	return false;	×
380	}
381
382	/**
383	* {@inheritDoc}
384	*/
385	@Override
386	public void unifyWith(Value v) throws UnificationException {
387	if (v == null) return;	×
388	String vs = v.stringValue();	×
389	if (!isUnifiableWith(v)) {	×
390	logger.error("Cannot unify {}", v);	×
391	throw new UnificationException(vs);	×
392	}
393	if (v instanceof IRI) {	×
394	if (vs.equals(LocalUri.of("nanopub").stringValue())) {	×
395	vs = getNanopubValue();	×
396	} else if (vs.equals(LocalUri.of("assertion").stringValue())) {	×
397	vs = getAssertionValue();	×
398	}
399	if (!prefix.isEmpty() && vs.startsWith(prefix)) {	×
400	vs = vs.substring(prefix.length());	×
401	// With read-only items, we don't need preliminary local identifiers:
402	// } else if (Utils.isLocalURI(vs)) {
403	// vs = vs.replaceFirst("^" + LocalUri.PREFIX, "");
404	// } else if (template.isLocalResource(iri) && !Utils.isUriPostfix(vs)) {
405	// vs = Utils.getUriPostfix(vs);
406	}
407	if (template.isAutoEscapePlaceholder(iri)) {	×
408	vs = Utils.urlDecode(vs);	×
409	}
410	model.setObject(vs);	×
411	} else if (v instanceof Literal vL) {	×
412	if (vs.length() >= LONG_LITERAL_LENGTH) {	×
413	linkComp.add(AttributeAppender.append("class", "long-literal collapsed"));	×
414	showMoreLabelLiteral.setVisible(true);	×
415	}
416	if (vL.getLanguage().isPresent()) {	×
417	model.setObject("\"" + vs + "\"");	×
418	languageModel.setObject("(" + Literals.normalizeLanguageTag(vL.getLanguage().get()) + ")");	×
419	languageComp.setVisible(true);	×
420	} else if (!vL.getDatatype().equals(XSD.STRING)) {	×
421	model.setObject("\"" + vs + "\"");	×
422	datatypeModel.setObject("(" + vL.getDatatype().stringValue().replace(XSD.NAMESPACE, "xsd:") + ")");	×
423	datatypeComp.setVisible(true);	×
424	} else {
425	model.setObject("\"" + vs + "\"");	×
426	}
427	if (Utils.looksLikeHtml(vs)) {	×
428	linkComp.setVisible(false);	×
429	extraModel.setObject(Utils.sanitizeHtml(vs));	×
430	extraComp.setEscapeModelStrings(false);	×
431	extraComp.setVisible(true);	×
432	showMoreLabelLiteral.setVisible(false);	×
433	showMoreLabelHTML.setVisible(true);	×
434	}
435	}
436	}	×
437
438	/**
439	* Validator class for validating the input.
440	*/
441	protected class Validator extends InvalidityHighlighting implements IValidator<String> {
442
443	/**
444	* Default constructor for Validator.
445	*/
446	public Validator() {	×
447	}	×
448
449	@Override
450	public void validate(IValidatable<String> s) {
451	String sv = s.getValue();	×
452	String p = prefix;	×
453	if (template.isAutoEscapePlaceholder(iri)) {	×
454	sv = Utils.urlEncode(sv);	×
455	}
456	if (sv.matches("https?://.+")) {	×
457	p = "";	×
458	} else if (sv.contains(":")) {	×
459	s.error(new ValidationError("Colon character is not allowed in postfix"));	×
460	}
461	String iriString = p + sv;	×
462	if (iriString.matches("[^:# ]+")) {	×
463	p = LocalUri.PREFIX;	×
464	iriString = p + sv;	×
465	}
466	try {
467	ParsedIRI piri = new ParsedIRI(iriString);	×
468	if (!piri.isAbsolute()) {	×
469	s.error(new ValidationError("IRI not well-formed"));	×
470	}
471	if (p.isEmpty() && !Utils.isLocalURI(sv) && !sv.matches("https?://.+")) {	×
472	s.error(new ValidationError("Only http(s):// IRIs are allowed here"));	×
473	}
474	} catch (URISyntaxException ex) {	×
475	s.error(new ValidationError("IRI not well-formed"));	×
476	}	×
477	String regex = template.getRegex(iri);	×
478	if (regex != null) {	×
479	if (!sv.matches(regex)) {	×
480	s.error(new ValidationError("Value '" + sv + "' doesn't match the pattern '" + regex + "'"));	×
481	}
482	}
483	if (template.isRestrictedChoicePlaceholder(iri)) {	×
484	if (!restrictedChoice.getPossibleValues().contains(iriString) && !restrictedChoice.hasPossibleRefValues()) {	×
485	// not checking the possible ref values can overgenerate, but normally works
486	s.error(new ValidationError("Invalid choice"));	×
487	}
488	}
489	if (template.isExternalUriPlaceholder(iri)) {	×
490	if (!iriString.matches("https?://.+")) {	×
491	s.error(new ValidationError("Not an external IRI"));	×
492	}
493	}
494	if (template.isTrustyUriPlaceholder(iri)) {	×
495	if (!TrustyUriUtils.isPotentialTrustyUri(iriString)) {	×
496	s.error(new ValidationError("Not a trusty URI"));	×
497	}
498	}
499	if (iri.equals(NTEMPLATE.CREATOR_PLACEHOLDER) && context.getExistingNanopub() != null) {	×
500	boolean found = false;	×
501	for (IRI creator : SimpleCreatorPattern.getCreators(context.getExistingNanopub())) {	×
502	if (creator.stringValue().equals(iriString)) {	×
503	found = true;	×
504	break;	×
505	}
506	}	×
507	if (!found) {	×
508	s.error(new ValidationError("Not a creator of nanopub"));	×
509	}
510	}
511	}	×
512
513	}
514
515	/**
516	* <p>toString.</p>
517	*
518	* @return a {@link java.lang.String} object
519	*/
520	public String toString() {
521	return "[read-only IRI item: " + iri + "]";	×
522	}
523
524	}

knowledgepixels / nanodash / 20268226543

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