#418

Committed 08 Dec 2025 09:55AM UTC coverage: 57.962% (-0.01%) from 57.972%

Build # #418

Build Type

Pull #218

github

Committed by

web-flow

Commit Message

Merge b21aa5610 into 365de94c4

Pull Request Pull Request #218: "id" is a required field in for `Parameter`s and `WorkflowStep`s

Run Details

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10 existing lines in 10 files now uncovered.

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53.06

/src/main/java/org/commonwl/cwlsdk/cwl1_2/CommandInputParameterImpl.java

// Copyright Common Workflow Language project contributors
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
//      http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.

package org.commonwl.cwlsdk.cwl1_2;

import org.commonwl.cwlsdk.cwl1_2.utils.LoaderInstances;
import org.commonwl.cwlsdk.cwl1_2.utils.LoadingOptions;
import org.commonwl.cwlsdk.cwl1_2.utils.LoadingOptionsBuilder;
import org.commonwl.cwlsdk.cwl1_2.utils.SaveableImpl;
import org.commonwl.cwlsdk.cwl1_2.utils.ValidationException;

/**
* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#CommandInputParameter</I><BR> <BLOCKQUOTE>
 An input parameter for a CommandLineTool. </BLOCKQUOTE>
 */
public class CommandInputParameterImpl extends SaveableImpl implements CommandInputParameter {
  private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();
  private java.util.Map<String, Object> extensionFields_ =
      new java.util.HashMap<String, Object>();
  public LoadingOptions getLoadingOptions() {
    return this.loadingOptions_;
  }
  public java.util.Map<String, Object> getExtensionFields() {
    return this.extensionFields_;
  }

  private String id;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#Parameter/id</I><BR>
   * <BLOCKQUOTE>
   * The unique identifier for this Parameter.   * </BLOCKQUOTE>
   */

  public String getId() {
    return this.id;
  }

  private java.util.Optional<String> label;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#Labeled/label</I><BR>
   * <BLOCKQUOTE>
   * A short, human-readable label of this object.   * </BLOCKQUOTE>
   */

  public java.util.Optional<String> getLabel() {
    return this.label;
  }

  private Object secondaryFiles;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#secondaryFiles</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: File` or is an array of `items: File`.
   * 
   * Provides a pattern or expression specifying files or
   * directories that should be included alongside the primary
   * file.  Secondary files may be required or optional.  When not
   * explicitly specified, secondary files specified for `inputs`
   * are required and `outputs` are optional.  An implementation
   * must include matching Files and Directories in the
   * `secondaryFiles` property of the primary file.  These Files
   * and Directories must be transferred and staged alongside the
   * primary file.  An implementation may fail workflow execution
   * if a required secondary file does not exist.
   * 
   * If the value is an expression, the value of `self` in the expression
   * must be the primary input or output File object to which this binding
   * applies.  The `basename`, `nameroot` and `nameext` fields must be
   * present in `self`.  For `CommandLineTool` outputs the `path` field must
   * also be present.  The expression must return a filename string relative
   * to the path to the primary File, a File or Directory object with either
   * `path` or `location` and `basename` fields set, or an array consisting
   * of strings or File or Directory objects.  It is legal to reference an
   * unchanged File or Directory object taken from input as a secondaryFile.
   * The expression may return &quot;null&quot; in which case there is no secondaryFile
   * from that expression.
   * 
   * To work on non-filename-preserving storage systems, portable tool
   * descriptions should avoid constructing new values from `location`, but
   * should construct relative references using `basename` or `nameroot`
   * instead.
   * 
   * If a value in `secondaryFiles` is a string that is not an expression,
   * it specifies that the following pattern should be applied to the path
   * of the primary file to yield a filename relative to the primary File:
   * 
   *   1. If string ends with `?` character, remove the last `?` and mark
   *     the resulting secondary file as optional.
   *   2. If string begins with one or more caret `^` characters, for each
   *     caret, remove the last file extension from the path (the last
   *     period `.` and all following characters).  If there are no file
   *     extensions, the path is unchanged.
   *   3. Append the remainder of the string to the end of the file path.
   *    * </BLOCKQUOTE>
   */

  public Object getSecondaryFiles() {
    return this.secondaryFiles;
  }

  private java.util.Optional<Boolean> streamable;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#FieldBase/streamable</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: File` or is an array of `items: File`.
   * 
   * A value of `true` indicates that the file is read or written
   * sequentially without seeking.  An implementation may use this flag to
   * indicate whether it is valid to stream file contents using a named
   * pipe.  Default: `false`.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<Boolean> getStreamable() {
    return this.streamable;
  }

  private Object doc;

  /**
   * Getter for property <I>https://w3id.org/cwl/salad#Documented/doc</I><BR>
   * <BLOCKQUOTE>
   * A documentation string for this object, or an array of strings which should be concatenated.   * </BLOCKQUOTE>
   */

  public Object getDoc() {
    return this.doc;
  }

  private Object format;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#format</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: File` or is an array of `items: File`.
   * 
   * This must be one or more IRIs of concept nodes
   * that represents file formats which are allowed as input to this
   * parameter, preferably defined within an ontology.  If no ontology is
   * available, file formats may be tested by exact match.
   *    * </BLOCKQUOTE>
   */

  public Object getFormat() {
    return this.format;
  }

  private java.util.Optional<Boolean> loadContents;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#LoadContents/loadContents</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: File` or is an array of `items: File`.
   * 
   * If true, the file (or each file in the array) must be a UTF-8
   * text file 64 KiB or smaller, and the implementation must read
   * the entire contents of the file (or file array) and place it
   * in the `contents` field of the File object for use by
   * expressions.  If the size of the file is greater than 64 KiB,
   * the implementation must raise a fatal error.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<Boolean> getLoadContents() {
    return this.loadContents;
  }

  private java.util.Optional<LoadListingEnum> loadListing;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#LoadContents/loadListing</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: Directory` or is an array of `items: Directory`.
   * 
   * Specify the desired behavior for loading the `listing` field of
   * a Directory object for use by expressions.
   * 
   * The order of precedence for loadListing is:
   * 
   *   1. `loadListing` on an individual parameter
   *   2. Inherited from `LoadListingRequirement`
   *   3. By default: `no_listing`
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<LoadListingEnum> getLoadListing() {
    return this.loadListing;
  }

  private java.util.Optional<Object> default_;

  /**
   * Getter for property <I>https://w3id.org/cwl/salad#default</I><BR>
   * <BLOCKQUOTE>
   * The default value to use for this parameter if the parameter is missing
   * from the input object, or if the value of the parameter in the input
   * object is `null`.  Default values are applied before evaluating expressions
   * (e.g. dependent `valueFrom` fields).
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<Object> getDefault() {
    return this.default_;
  }

  private Object type;

  /**
   * Getter for property <I>https://w3id.org/cwl/salad#type</I><BR>
   * <BLOCKQUOTE>
   * Specify valid types of data that may be assigned to this parameter.
   *    * </BLOCKQUOTE>
   */

  public Object getType() {
    return this.type;
  }

  private java.util.Optional<CommandLineBinding> inputBinding;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#CommandInputParameter/inputBinding</I><BR>
   * <BLOCKQUOTE>
   * Describes how to turn the input parameters of a process into
   * command line arguments.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<CommandLineBinding> getInputBinding() {
    return this.inputBinding;
  }

  /**
   * Used by {@link org.commonwl.cwlsdk.cwl1_2.utils.RootLoader} to construct instances of CommandInputParameterImpl.
   *
   * @param __doc_            Document fragment to load this record object from (presumably a
                              {@link java.util.Map}).
   * @param __baseUri_        Base URI to generate child document IDs against.
   * @param __loadingOptions  Context for loading URIs and populating objects.
   * @param __docRoot_        ID at this position in the document (if available) (maybe?)
   * @throws ValidationException If the document fragment is not a {@link java.util.Map}
   *                             or validation of fields fails.
   */
  public CommandInputParameterImpl(
      final Object __doc_,
      final String __baseUri_,
      LoadingOptions __loadingOptions,
      final String __docRoot_) {
    super(__doc_, __baseUri_, __loadingOptions, __docRoot_);
    // Prefix plumbing variables with '__' to reduce likelihood of collision with
    // generated names.
    String __baseUri = __baseUri_;
    String __docRoot = __docRoot_;
    if (!(__doc_ instanceof java.util.Map)) {
      throw new ValidationException("CommandInputParameterImpl called on non-map");
    }
    final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;
    final java.util.List<ValidationException> __errors =
        new java.util.ArrayList<ValidationException>();
    if (__loadingOptions != null) {
      this.loadingOptions_ = __loadingOptions;
    }
    String id;

    if (__doc.containsKey("id")) {
      try {
        id =
            LoaderInstances
                .uri_StringInstance_True_False_None_None
                .loadField(__doc.get("id"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        id = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `id` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      id = null;
    }

    if (id == null) {
      if (__docRoot != null) {
        id = __docRoot;
      } else {
        throw new ValidationException("Missing id");
      }
    }
    __baseUri = (String) id;
    java.util.Optional<String> label;

    if (__doc.containsKey("label")) {
      try {
        label =
            LoaderInstances
                .optional_StringInstance
                .loadField(__doc.get("label"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        label = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `label` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      label = null;
    }
    Object secondaryFiles;

    if (__doc.containsKey("secondaryFiles")) {
      try {
        secondaryFiles =
            LoaderInstances
                .secondaryfilesdsl_union_of_NullInstance_or_SecondaryFileSchema_or_array_of_SecondaryFileSchema
                .loadField(__doc.get("secondaryFiles"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        secondaryFiles = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `secondaryFiles` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      secondaryFiles = null;
    }
    java.util.Optional<Boolean> streamable;

    if (__doc.containsKey("streamable")) {
      try {
        streamable =
            LoaderInstances
                .optional_BooleanInstance
                .loadField(__doc.get("streamable"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        streamable = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `streamable` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      streamable = null;
    }
    Object doc;

    if (__doc.containsKey("doc")) {
      try {
        doc =
            LoaderInstances
                .union_of_NullInstance_or_StringInstance_or_array_of_StringInstance
                .loadField(__doc.get("doc"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        doc = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `doc` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      doc = null;
    }
    Object format;

    if (__doc.containsKey("format")) {
      try {
        format =
            LoaderInstances
                .uri_union_of_NullInstance_or_StringInstance_or_array_of_StringInstance_or_ExpressionLoader_True_False_None_True
                .loadField(__doc.get("format"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        format = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `format` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      format = null;
    }
    java.util.Optional<Boolean> loadContents;

    if (__doc.containsKey("loadContents")) {
      try {
        loadContents =
            LoaderInstances
                .optional_BooleanInstance
                .loadField(__doc.get("loadContents"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        loadContents = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `loadContents` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      loadContents = null;
    }
    java.util.Optional<LoadListingEnum> loadListing;

    if (__doc.containsKey("loadListing")) {
      try {
        loadListing =
            LoaderInstances
                .optional_LoadListingEnum
                .loadField(__doc.get("loadListing"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        loadListing = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `loadListing` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      loadListing = null;
    }
    java.util.Optional<Object> default_;

    if (__doc.containsKey("default")) {
      try {
        default_ =
            LoaderInstances
                .optional_CWLObjectType
                .loadField(__doc.get("default"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        default_ = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `default` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      default_ = null;
    }
    Object type;
    try {
      type =
          LoaderInstances
              .typedsl_union_of_CWLType_or_stdin_or_CommandInputRecordSchema_or_CommandInputEnumSchema_or_CommandInputArraySchema_or_StringInstance_or_array_of_union_of_CWLType_or_CommandInputRecordSchema_or_CommandInputEnumSchema_or_CommandInputArraySchema_or_StringInstance_2
              .loadField(__doc.get("type"), __baseUri, __loadingOptions);
    } catch (ValidationException e) {
      type = null; // won't be used but prevents compiler from complaining.
      final String __message = "the `type` field is not valid because:";
      __errors.add(new ValidationException(__message, e));
    }
    java.util.Optional<CommandLineBinding> inputBinding;

    if (__doc.containsKey("inputBinding")) {
      try {
        inputBinding =
            LoaderInstances
                .optional_CommandLineBinding
                .loadField(__doc.get("inputBinding"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        inputBinding = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `inputBinding` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      inputBinding = null;
    }
    if (!__errors.isEmpty()) {
      throw new ValidationException("Trying 'RecordField'", __errors);
    }
    this.label = (java.util.Optional<String>) label;
    this.secondaryFiles = (Object) secondaryFiles;
    this.streamable = (java.util.Optional<Boolean>) streamable;
    this.doc = (Object) doc;
    this.id = (String) id;
    this.format = (Object) format;
    this.loadContents = (java.util.Optional<Boolean>) loadContents;
    this.loadListing = (java.util.Optional<LoadListingEnum>) loadListing;
    this.default_ = (java.util.Optional<Object>) default_;
    this.type = (Object) type;
    this.inputBinding = (java.util.Optional<CommandLineBinding>) inputBinding;
    for (String field:__doc.keySet()) {
      if (!attrs.contains(field)) {
        if (field.contains(":")) {
          String expanded_field = __loadingOptions.expandUrl(field, "", false, false, null);
          extensionFields_.put(expanded_field, __doc.get(field));
        }
      }
    }
  }
  private java.util.List<String> attrs = java.util.Arrays.asList("label", "secondaryFiles", "streamable", "doc", "id", "format", "loadContents", "loadListing", "default", "type", "inputBinding");
}

1	// Copyright Common Workflow Language project contributors
2	//
3	// Licensed under the Apache License, Version 2.0 (the "License");
4	// you may not use this file except in compliance with the License.
5	// You may obtain a copy of the License at
6	//
7	// http://www.apache.org/licenses/LICENSE-2.0
8	//
9	// Unless required by applicable law or agreed to in writing, software
10	// distributed under the License is distributed on an "AS IS" BASIS,
11	// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12	// See the License for the specific language governing permissions and
13	// limitations under the License.
14
15	package org.commonwl.cwlsdk.cwl1_2;
16
17	import org.commonwl.cwlsdk.cwl1_2.utils.LoaderInstances;
18	import org.commonwl.cwlsdk.cwl1_2.utils.LoadingOptions;
19	import org.commonwl.cwlsdk.cwl1_2.utils.LoadingOptionsBuilder;
20	import org.commonwl.cwlsdk.cwl1_2.utils.SaveableImpl;
21	import org.commonwl.cwlsdk.cwl1_2.utils.ValidationException;
22
23	/**
24	* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#CommandInputParameter</I><BR> <BLOCKQUOTE>
25	An input parameter for a CommandLineTool. </BLOCKQUOTE>
26	*/
27	public class CommandInputParameterImpl extends SaveableImpl implements CommandInputParameter {
28	private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();	1✔
29	private java.util.Map<String, Object> extensionFields_ =	1✔
30	new java.util.HashMap<String, Object>();
31	public LoadingOptions getLoadingOptions() {
32	return this.loadingOptions_;	×
33	}
34	public java.util.Map<String, Object> getExtensionFields() {
35	return this.extensionFields_;	×
36	}
37
38	private String id;
39
40	/**
41	* Getter for property <I>https://w3id.org/cwl/cwl#Parameter/id</I><BR>
42	* <BLOCKQUOTE>
43	* The unique identifier for this Parameter. * </BLOCKQUOTE>
44	*/
45
46	public String getId() {
47	return this.id;	×
48	}
49
50	private java.util.Optional<String> label;
51
52	/**
53	* Getter for property <I>https://w3id.org/cwl/cwl#Labeled/label</I><BR>
54	* <BLOCKQUOTE>
55	* A short, human-readable label of this object. * </BLOCKQUOTE>
56	*/
57
58	public java.util.Optional<String> getLabel() {
59	return this.label;	×
60	}
61
62	private Object secondaryFiles;
63
64	/**
65	* Getter for property <I>https://w3id.org/cwl/cwl#secondaryFiles</I><BR>
66	* <BLOCKQUOTE>
67	* Only valid when `type: File` or is an array of `items: File`.
68	*
69	* Provides a pattern or expression specifying files or
70	* directories that should be included alongside the primary
71	* file. Secondary files may be required or optional. When not
72	* explicitly specified, secondary files specified for `inputs`
73	* are required and `outputs` are optional. An implementation
74	* must include matching Files and Directories in the
75	* `secondaryFiles` property of the primary file. These Files
76	* and Directories must be transferred and staged alongside the
77	* primary file. An implementation may fail workflow execution
78	* if a required secondary file does not exist.
79	*
80	* If the value is an expression, the value of `self` in the expression
81	* must be the primary input or output File object to which this binding
82	* applies. The `basename`, `nameroot` and `nameext` fields must be
83	* present in `self`. For `CommandLineTool` outputs the `path` field must
84	* also be present. The expression must return a filename string relative
85	* to the path to the primary File, a File or Directory object with either
86	* `path` or `location` and `basename` fields set, or an array consisting
87	* of strings or File or Directory objects. It is legal to reference an
88	* unchanged File or Directory object taken from input as a secondaryFile.
89	* The expression may return "null" in which case there is no secondaryFile
90	* from that expression.
91	*
92	* To work on non-filename-preserving storage systems, portable tool
93	* descriptions should avoid constructing new values from `location`, but
94	* should construct relative references using `basename` or `nameroot`
95	* instead.
96	*
97	* If a value in `secondaryFiles` is a string that is not an expression,
98	* it specifies that the following pattern should be applied to the path
99	* of the primary file to yield a filename relative to the primary File:
100	*
101	* 1. If string ends with `?` character, remove the last `?` and mark
102	* the resulting secondary file as optional.
103	* 2. If string begins with one or more caret `^` characters, for each
104	* caret, remove the last file extension from the path (the last
105	* period `.` and all following characters). If there are no file
106	* extensions, the path is unchanged.
107	* 3. Append the remainder of the string to the end of the file path.
108	* * </BLOCKQUOTE>
109	*/
110
111	public Object getSecondaryFiles() {
112	return this.secondaryFiles;	×
113	}
114
115	private java.util.Optional<Boolean> streamable;
116
117	/**
118	* Getter for property <I>https://w3id.org/cwl/cwl#FieldBase/streamable</I><BR>
119	* <BLOCKQUOTE>
120	* Only valid when `type: File` or is an array of `items: File`.
121	*
122	* A value of `true` indicates that the file is read or written
123	* sequentially without seeking. An implementation may use this flag to
124	* indicate whether it is valid to stream file contents using a named
125	* pipe. Default: `false`.
126	* * </BLOCKQUOTE>
127	*/
128
129	public java.util.Optional<Boolean> getStreamable() {
130	return this.streamable;	×
131	}
132
133	private Object doc;
134
135	/**
136	* Getter for property <I>https://w3id.org/cwl/salad#Documented/doc</I><BR>
137	* <BLOCKQUOTE>
138	* A documentation string for this object, or an array of strings which should be concatenated. * </BLOCKQUOTE>
139	*/
140
141	public Object getDoc() {
142	return this.doc;	×
143	}
144
145	private Object format;
146
147	/**
148	* Getter for property <I>https://w3id.org/cwl/cwl#format</I><BR>
149	* <BLOCKQUOTE>
150	* Only valid when `type: File` or is an array of `items: File`.
151	*
152	* This must be one or more IRIs of concept nodes
153	* that represents file formats which are allowed as input to this
154	* parameter, preferably defined within an ontology. If no ontology is
155	* available, file formats may be tested by exact match.
156	* * </BLOCKQUOTE>
157	*/
158
159	public Object getFormat() {
160	return this.format;	×
161	}
162
163	private java.util.Optional<Boolean> loadContents;
164
165	/**
166	* Getter for property <I>https://w3id.org/cwl/cwl#LoadContents/loadContents</I><BR>
167	* <BLOCKQUOTE>
168	* Only valid when `type: File` or is an array of `items: File`.
169	*
170	* If true, the file (or each file in the array) must be a UTF-8
171	* text file 64 KiB or smaller, and the implementation must read
172	* the entire contents of the file (or file array) and place it
173	* in the `contents` field of the File object for use by
174	* expressions. If the size of the file is greater than 64 KiB,
175	* the implementation must raise a fatal error.
176	* * </BLOCKQUOTE>
177	*/
178
179	public java.util.Optional<Boolean> getLoadContents() {
180	return this.loadContents;	×
181	}
182
183	private java.util.Optional<LoadListingEnum> loadListing;
184
185	/**
186	* Getter for property <I>https://w3id.org/cwl/cwl#LoadContents/loadListing</I><BR>
187	* <BLOCKQUOTE>
188	* Only valid when `type: Directory` or is an array of `items: Directory`.
189	*
190	* Specify the desired behavior for loading the `listing` field of
191	* a Directory object for use by expressions.
192	*
193	* The order of precedence for loadListing is:
194	*
195	* 1. `loadListing` on an individual parameter
196	* 2. Inherited from `LoadListingRequirement`
197	* 3. By default: `no_listing`
198	* * </BLOCKQUOTE>
199	*/
200
201	public java.util.Optional<LoadListingEnum> getLoadListing() {
202	return this.loadListing;	×
203	}
204
205	private java.util.Optional<Object> default_;
206
207	/**
208	* Getter for property <I>https://w3id.org/cwl/salad#default</I><BR>
209	* <BLOCKQUOTE>
210	* The default value to use for this parameter if the parameter is missing
211	* from the input object, or if the value of the parameter in the input
212	* object is `null`. Default values are applied before evaluating expressions
213	* (e.g. dependent `valueFrom` fields).
214	* * </BLOCKQUOTE>
215	*/
216
217	public java.util.Optional<Object> getDefault() {
218	return this.default_;	×
219	}
220
221	private Object type;
222
223	/**
224	* Getter for property <I>https://w3id.org/cwl/salad#type</I><BR>
225	* <BLOCKQUOTE>
226	* Specify valid types of data that may be assigned to this parameter.
227	* * </BLOCKQUOTE>
228	*/
229
230	public Object getType() {
231	return this.type;	×
232	}
233
234	private java.util.Optional<CommandLineBinding> inputBinding;
235
236	/**
237	* Getter for property <I>https://w3id.org/cwl/cwl#CommandInputParameter/inputBinding</I><BR>
238	* <BLOCKQUOTE>
239	* Describes how to turn the input parameters of a process into
240	* command line arguments.
241	* * </BLOCKQUOTE>
242	*/
243
244	public java.util.Optional<CommandLineBinding> getInputBinding() {
245	return this.inputBinding;	×
246	}
247
248	/**
249	* Used by {@link org.commonwl.cwlsdk.cwl1_2.utils.RootLoader} to construct instances of CommandInputParameterImpl.
250	*
251	* @param __doc_ Document fragment to load this record object from (presumably a
252	{@link java.util.Map}).
253	* @param __baseUri_ Base URI to generate child document IDs against.
254	* @param __loadingOptions Context for loading URIs and populating objects.
255	* @param __docRoot_ ID at this position in the document (if available) (maybe?)
256	* @throws ValidationException If the document fragment is not a {@link java.util.Map}
257	* or validation of fields fails.
258	*/
259	public CommandInputParameterImpl(
260	final Object __doc_,
261	final String __baseUri_,
262	LoadingOptions __loadingOptions,
263	final String __docRoot_) {
264	super(__doc_, __baseUri_, __loadingOptions, __docRoot_);	1✔
265	// Prefix plumbing variables with '__' to reduce likelihood of collision with
266	// generated names.
267	String __baseUri = __baseUri_;	1✔
268	String __docRoot = __docRoot_;	1✔
269	if (!(__doc_ instanceof java.util.Map)) {	1✔
270	throw new ValidationException("CommandInputParameterImpl called on non-map");	×
271	}
272	final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;	1✔
273	final java.util.List<ValidationException> __errors =	1✔
274	new java.util.ArrayList<ValidationException>();
275	if (__loadingOptions != null) {	1✔
276	this.loadingOptions_ = __loadingOptions;	1✔
277	}
278	String id;
279
280	if (__doc.containsKey("id")) {	1✔
281	try {
282	id =	1✔
283	LoaderInstances
284	.uri_StringInstance_True_False_None_None
285	.loadField(__doc.get("id"), __baseUri, __loadingOptions);	1✔
286	} catch (ValidationException e) {	×
287	id = null; // won't be used but prevents compiler from complaining.	×
288	final String __message = "the `id` field is not valid because:";	×
289	__errors.add(new ValidationException(__message, e));	×
290	}	1✔
291
292	} else {
293	id = null;	×
294	}
295
296	if (id == null) {	1✔
UNCOV 297	if (__docRoot != null) {	×
NEW 298	id = __docRoot;	×
299	} else {
NEW 300	throw new ValidationException("Missing id");	×
301	}
302	}
303	__baseUri = (String) id;	1✔
304	java.util.Optional<String> label;
305
306	if (__doc.containsKey("label")) {	1✔
307	try {
308	label =	1✔
309	LoaderInstances
310	.optional_StringInstance
311	.loadField(__doc.get("label"), __baseUri, __loadingOptions);	1✔
312	} catch (ValidationException e) {	×
313	label = null; // won't be used but prevents compiler from complaining.	×
314	final String __message = "the `label` field is not valid because:";	×
315	__errors.add(new ValidationException(__message, e));	×
316	}	1✔
317
318	} else {
319	label = null;	1✔
320	}
321	Object secondaryFiles;
322
323	if (__doc.containsKey("secondaryFiles")) {	1✔
324	try {
325	secondaryFiles =	1✔
326	LoaderInstances
327	.secondaryfilesdsl_union_of_NullInstance_or_SecondaryFileSchema_or_array_of_SecondaryFileSchema
328	.loadField(__doc.get("secondaryFiles"), __baseUri, __loadingOptions);	1✔
329	} catch (ValidationException e) {	×
330	secondaryFiles = null; // won't be used but prevents compiler from complaining.	×
331	final String __message = "the `secondaryFiles` field is not valid because:";	×
332	__errors.add(new ValidationException(__message, e));	×
333	}	1✔
334
335	} else {
336	secondaryFiles = null;	1✔
337	}
338	java.util.Optional<Boolean> streamable;
339
340	if (__doc.containsKey("streamable")) {	1✔
341	try {
342	streamable =	×
343	LoaderInstances
344	.optional_BooleanInstance
345	.loadField(__doc.get("streamable"), __baseUri, __loadingOptions);	×
346	} catch (ValidationException e) {	×
347	streamable = null; // won't be used but prevents compiler from complaining.	×
348	final String __message = "the `streamable` field is not valid because:";	×
349	__errors.add(new ValidationException(__message, e));	×
350	}	×
351
352	} else {
353	streamable = null;	1✔
354	}
355	Object doc;
356
357	if (__doc.containsKey("doc")) {	1✔
358	try {
359	doc =	1✔
360	LoaderInstances
361	.union_of_NullInstance_or_StringInstance_or_array_of_StringInstance
362	.loadField(__doc.get("doc"), __baseUri, __loadingOptions);	1✔
363	} catch (ValidationException e) {	×
364	doc = null; // won't be used but prevents compiler from complaining.	×
365	final String __message = "the `doc` field is not valid because:";	×
366	__errors.add(new ValidationException(__message, e));	×
367	}	1✔
368
369	} else {
370	doc = null;	1✔
371	}
372	Object format;
373
374	if (__doc.containsKey("format")) {	1✔
375	try {
376	format =	1✔
377	LoaderInstances
378	.uri_union_of_NullInstance_or_StringInstance_or_array_of_StringInstance_or_ExpressionLoader_True_False_None_True
379	.loadField(__doc.get("format"), __baseUri, __loadingOptions);	1✔
380	} catch (ValidationException e) {	×
381	format = null; // won't be used but prevents compiler from complaining.	×
382	final String __message = "the `format` field is not valid because:";	×
383	__errors.add(new ValidationException(__message, e));	×
384	}	1✔
385
386	} else {
387	format = null;	1✔
388	}
389	java.util.Optional<Boolean> loadContents;
390
391	if (__doc.containsKey("loadContents")) {	1✔
392	try {
393	loadContents =	1✔
394	LoaderInstances
395	.optional_BooleanInstance
396	.loadField(__doc.get("loadContents"), __baseUri, __loadingOptions);	1✔
397	} catch (ValidationException e) {	×
398	loadContents = null; // won't be used but prevents compiler from complaining.	×
399	final String __message = "the `loadContents` field is not valid because:";	×
400	__errors.add(new ValidationException(__message, e));	×
401	}	1✔
402
403	} else {
404	loadContents = null;	1✔
405	}
406	java.util.Optional<LoadListingEnum> loadListing;
407
408	if (__doc.containsKey("loadListing")) {	1✔
409	try {
410	loadListing =	1✔
411	LoaderInstances
412	.optional_LoadListingEnum
413	.loadField(__doc.get("loadListing"), __baseUri, __loadingOptions);	1✔
414	} catch (ValidationException e) {	×
415	loadListing = null; // won't be used but prevents compiler from complaining.	×
416	final String __message = "the `loadListing` field is not valid because:";	×
417	__errors.add(new ValidationException(__message, e));	×
418	}	1✔
419
420	} else {
421	loadListing = null;	1✔
422	}
423	java.util.Optional<Object> default_;
424
425	if (__doc.containsKey("default")) {	1✔
426	try {
427	default_ =	1✔
428	LoaderInstances
429	.optional_CWLObjectType
430	.loadField(__doc.get("default"), __baseUri, __loadingOptions);	1✔
431	} catch (ValidationException e) {	×
432	default_ = null; // won't be used but prevents compiler from complaining.	×
433	final String __message = "the `default` field is not valid because:";	×
434	__errors.add(new ValidationException(__message, e));	×
435	}	1✔
436
437	} else {
438	default_ = null;	1✔
439	}
440	Object type;
441	try {
442	type =	1✔
443	LoaderInstances
444	.typedsl_union_of_CWLType_or_stdin_or_CommandInputRecordSchema_or_CommandInputEnumSchema_or_CommandInputArraySchema_or_StringInstance_or_array_of_union_of_CWLType_or_CommandInputRecordSchema_or_CommandInputEnumSchema_or_CommandInputArraySchema_or_StringInstance_2
445	.loadField(__doc.get("type"), __baseUri, __loadingOptions);	1✔
446	} catch (ValidationException e) {	×
447	type = null; // won't be used but prevents compiler from complaining.	×
448	final String __message = "the `type` field is not valid because:";	×
449	__errors.add(new ValidationException(__message, e));	×
450	}	1✔
451	java.util.Optional<CommandLineBinding> inputBinding;
452
453	if (__doc.containsKey("inputBinding")) {	1✔
454	try {
455	inputBinding =	1✔
456	LoaderInstances
457	.optional_CommandLineBinding
458	.loadField(__doc.get("inputBinding"), __baseUri, __loadingOptions);	1✔
459	} catch (ValidationException e) {	×
460	inputBinding = null; // won't be used but prevents compiler from complaining.	×
461	final String __message = "the `inputBinding` field is not valid because:";	×
462	__errors.add(new ValidationException(__message, e));	×
463	}	1✔
464
465	} else {
466	inputBinding = null;	1✔
467	}
468	if (!__errors.isEmpty()) {	1✔
469	throw new ValidationException("Trying 'RecordField'", __errors);	×
470	}
471	this.label = (java.util.Optional<String>) label;	1✔
472	this.secondaryFiles = (Object) secondaryFiles;	1✔
473	this.streamable = (java.util.Optional<Boolean>) streamable;	1✔
474	this.doc = (Object) doc;	1✔
475	this.id = (String) id;	1✔
476	this.format = (Object) format;	1✔
477	this.loadContents = (java.util.Optional<Boolean>) loadContents;	1✔
478	this.loadListing = (java.util.Optional<LoadListingEnum>) loadListing;	1✔
479	this.default_ = (java.util.Optional<Object>) default_;	1✔
480	this.type = (Object) type;	1✔
481	this.inputBinding = (java.util.Optional<CommandLineBinding>) inputBinding;	1✔
482	for (String field:__doc.keySet()) {	1✔
483	if (!attrs.contains(field)) {	1✔
484	if (field.contains(":")) {	×
485	String expanded_field = __loadingOptions.expandUrl(field, "", false, false, null);	×
486	extensionFields_.put(expanded_field, __doc.get(field));	×
487	}
488	}
489	}	1✔
490	}	1✔
491	private java.util.List<String> attrs = java.util.Arrays.asList("label", "secondaryFiles", "streamable", "doc", "id", "format", "loadContents", "loadListing", "default", "type", "inputBinding");	1✔
492	}

common-workflow-language / cwljava / #418

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