19473636483

Committed 18 Nov 2025 04:35PM UTC coverage: 14.513% (+0.2%) from 14.288%

Build # 19473636483

Build Type

push

github

Committed by

ashleycaselli

Commit Message

ci(deps): update action actions/setup-java to v5.0.0

Run Details

542 of 4792 branches covered (11.31%)

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39.38

src/main/java/com/knowledgepixels/nanodash/MaintainedResource.java

package com.knowledgepixels.nanodash;

import com.knowledgepixels.nanodash.vocabulary.KPXL_TERMS;
import org.eclipse.rdf4j.model.IRI;
import org.nanopub.Nanopub;
import org.nanopub.extra.services.ApiResponse;
import org.nanopub.extra.services.ApiResponseEntry;
import org.nanopub.extra.services.QueryRef;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

import java.io.Serializable;
import java.util.*;

public class MaintainedResource implements Serializable {

    private static final Logger logger = LoggerFactory.getLogger(MaintainedResource.class);

    private static List<MaintainedResource> resourceList;
    private static Map<String, MaintainedResource> resourcesById;
    private static Map<String, MaintainedResource> resourcesByNamespace;
    private static Map<Space, List<MaintainedResource>> resourcesBySpace;
    private static boolean loaded = false;
    private static Long runRootUpdateAfter = null;

    public static synchronized void refresh(ApiResponse resp) {
        resourceList = new ArrayList<>();
        resourcesById = new HashMap<>();
        resourcesBySpace = new HashMap<>();
        resourcesByNamespace = new HashMap<>();
        for (ApiResponseEntry entry : resp.getData()) {
            Space space = Space.get(entry.get("space"));
            if (space == null) continue;
            MaintainedResource resource = new MaintainedResource(entry, space);
            if (resourcesById.containsKey(resource.getId())) continue;
            resourceList.add(resource);
            resourcesById.put(resource.getId(), resource);
            resourcesBySpace.computeIfAbsent(space, k -> new ArrayList<>()).add(resource);
            if (resource.getNamespace() != null) {
                // TODO Handle conflicts when two resources claim the same namespace:
                resourcesByNamespace.put(resource.getNamespace(), resource);
            }
        }
        loaded = true;
    }

    /**
     * Check if the resources have been loaded.
     *
     * @return true if loaded, false otherwise.
     */
    public static boolean isLoaded() {
        return loaded;
    }

    /**
     * Ensure that the resources are loaded, fetching them from the API if necessary.
     */
    public static void ensureLoaded() {
        if (resourceList == null) {
            try {
                if (runRootUpdateAfter != null) {
                    while (System.currentTimeMillis() < runRootUpdateAfter) {
                        Thread.sleep(100);
                    }
                    runRootUpdateAfter = null;
                }
            } catch (InterruptedException ex) {
                logger.error("Interrupted", ex);
            }
            refresh(QueryApiAccess.forcedGet(new QueryRef("get-maintained-resources")));
        }
    }

    public static void forceRootRefresh(long waitMillis) {
        resourceList = null;
        runRootUpdateAfter = System.currentTimeMillis() + waitMillis;
    }

    /**
     * Get the list of all maintained resources.
     *
     * @return List of resources.
     */
    public static List<MaintainedResource> getResourceList() {
        ensureLoaded();
        return resourceList;
    }

    public static List<MaintainedResource> getResourcesBySpace(Space space) {
        return resourcesBySpace.computeIfAbsent(space, k -> new ArrayList<>());
    }

    /**
     * Get a maintained resource by its id.
     *
     * @param id The id of the resource.
     * @return The corresponding MaintainedResource object, or null if not found.
     */
    public static MaintainedResource get(String id) {
        ensureLoaded();
        return resourcesById.get(id);
    }

    public static MaintainedResource getByNamespace(String namespace) {
        return resourcesByNamespace.get(namespace);
    }

    public static String getNamespace(Object stringOrIri) {
        return stringOrIri.toString().replaceFirst("([#/])[^#/]+$", "$1");
    }

    public static void refresh() {
        refresh(QueryApiAccess.forcedGet(new QueryRef("get-maintained-resources")));
        for (MaintainedResource resource : resourceList) {
            resource.dataNeedsUpdate = true;
        }
    }

    private String id, label, nanopubId, namespace;
    private Space space;
    private Nanopub nanopub;
    private ResourceData data = new ResourceData();

    private boolean dataInitialized = false;
    private boolean dataNeedsUpdate = true;

    private static class ResourceData implements Serializable {
        List<ViewDisplay> topLevelViews = new ArrayList<>();
        List<ViewDisplay> partLevelViews = new ArrayList<>();
    }

    private MaintainedResource(ApiResponseEntry resp, Space space) {
        this.space = space;
        this.id = resp.get("resource");
        this.label = resp.get("label");
        this.nanopubId = resp.get("np");
        this.namespace = resp.get("namespace");
        if (namespace != null && namespace.isBlank()) namespace = null;
        this.nanopub = Utils.getAsNanopub(nanopubId);
    }

    public Space getSpace() {
        return space;
    }

    public String getId() {
        return id;
    }

    public String getNanopubId() {
        return nanopubId;
    }

    public Nanopub getNanopub() {
        return nanopub;
    }

    public String getLabel() {
        return label;
    }

    public String getNamespace() {
        return namespace;
    }

    public boolean isDataInitialized() {
        triggerDataUpdate();
        return dataInitialized;
    }

    public List<ViewDisplay> getTopLevelViews() {
        triggerDataUpdate();
        // TODO Check for compliance with target classes here too:
        return data.topLevelViews;
    }

    public List<ViewDisplay> getPartLevelViews(Set<IRI> classes) {
        triggerDataUpdate();
        List<ViewDisplay> viewDisplays = new ArrayList<>();
        for (ViewDisplay v : data.partLevelViews) {
            if (v.getView().hasTargetClasses()) {
                for (IRI c : classes) {
                    if (v.getView().hasTargetClass(c)) {
                        viewDisplays.add(v);
                        break;
                    }
                }
            } else {
                viewDisplays.add(v);
            }
        }
        return viewDisplays;
    }

    public boolean coversElement(String elementId) {
        triggerDataUpdate();
        for (ViewDisplay v : data.topLevelViews) {
            if (v.getView().coversElement(elementId)) return true;
        }
        for (ViewDisplay v : data.partLevelViews) {
            if (v.getView().coversElement(elementId)) return true;
        }
        return false;
    }

    private synchronized void triggerDataUpdate() {
        if (dataNeedsUpdate) {
            new Thread(() -> {
                try {
                    ResourceData newData = new ResourceData();

                    for (ApiResponseEntry r : QueryApiAccess.get(new QueryRef("get-view-displays", "resource", id)).getData()) {
                        if (!space.isAdminPubkey(r.get("pubkey"))) continue;
                        try {
                            ViewDisplay vd = ViewDisplay.get(r.get("display"));
                            if (KPXL_TERMS.PART_LEVEL_VIEW_DISPLAY.stringValue().equals(r.get("displayType"))) {
                                newData.partLevelViews.add(vd);
                            } else {
                                newData.topLevelViews.add(vd);
                            }
                        } catch (IllegalArgumentException ex) {
                            logger.error("Couldn't generate view display object", ex);
                        }
                    }
                    Collections.sort(newData.topLevelViews);
                    Collections.sort(newData.partLevelViews);
                    data = newData;
                    dataInitialized = true;
                } catch (Exception ex) {
                    logger.error("Error while trying to update space data: {}", ex);
                    dataNeedsUpdate = true;
                }
            }).start();
            dataNeedsUpdate = false;
        }
    }

    @Override
    public String toString() {
        return id;
    }

}

1	package com.knowledgepixels.nanodash;
2
3	import com.knowledgepixels.nanodash.vocabulary.KPXL_TERMS;
4	import org.eclipse.rdf4j.model.IRI;
5	import org.nanopub.Nanopub;
6	import org.nanopub.extra.services.ApiResponse;
7	import org.nanopub.extra.services.ApiResponseEntry;
8	import org.nanopub.extra.services.QueryRef;
9	import org.slf4j.Logger;
10	import org.slf4j.LoggerFactory;
11
12	import java.io.Serializable;
13	import java.util.*;
14
15	public class MaintainedResource implements Serializable {
16
17	private static final Logger logger = LoggerFactory.getLogger(MaintainedResource.class);	3✔
18
19	private static List<MaintainedResource> resourceList;
20	private static Map<String, MaintainedResource> resourcesById;
21	private static Map<String, MaintainedResource> resourcesByNamespace;
22	private static Map<Space, List<MaintainedResource>> resourcesBySpace;
23	private static boolean loaded = false;	2✔
24	private static Long runRootUpdateAfter = null;	3✔
25
26	public static synchronized void refresh(ApiResponse resp) {
27	resourceList = new ArrayList<>();	4✔
28	resourcesById = new HashMap<>();	4✔
29	resourcesBySpace = new HashMap<>();	4✔
30	resourcesByNamespace = new HashMap<>();	4✔
31	for (ApiResponseEntry entry : resp.getData()) {	11✔
32	Space space = Space.get(entry.get("space"));	5✔
33	if (space == null) continue;	2!
34	MaintainedResource resource = new MaintainedResource(entry, space);	6✔
35	if (resourcesById.containsKey(resource.getId())) continue;	5!
36	resourceList.add(resource);	4✔
37	resourcesById.put(resource.getId(), resource);	6✔
38	resourcesBySpace.computeIfAbsent(space, k -> new ArrayList<>()).add(resource);	12✔
39	if (resource.getNamespace() != null) {	3✔
40	// TODO Handle conflicts when two resources claim the same namespace:
41	resourcesByNamespace.put(resource.getNamespace(), resource);	6✔
42	}
43	}	1✔
44	loaded = true;	2✔
45	}	1✔
46
47	/**
48	* Check if the resources have been loaded.
49	*
50	* @return true if loaded, false otherwise.
51	*/
52	public static boolean isLoaded() {
53	return loaded;	×
54	}
55
56	/**
57	* Ensure that the resources are loaded, fetching them from the API if necessary.
58	*/
59	public static void ensureLoaded() {
60	if (resourceList == null) {	2✔
61	try {
62	if (runRootUpdateAfter != null) {	2!
63	while (System.currentTimeMillis() < runRootUpdateAfter) {	×
64	Thread.sleep(100);	×
65	}
66	runRootUpdateAfter = null;	×
67	}
68	} catch (InterruptedException ex) {	×
69	logger.error("Interrupted", ex);	×
70	}	1✔
71	refresh(QueryApiAccess.forcedGet(new QueryRef("get-maintained-resources")));	6✔
72	}
73	}	1✔
74
75	public static void forceRootRefresh(long waitMillis) {
76	resourceList = null;	×
77	runRootUpdateAfter = System.currentTimeMillis() + waitMillis;	×
78	}	×
79
80	/**
81	* Get the list of all maintained resources.
82	*
83	* @return List of resources.
84	*/
85	public static List<MaintainedResource> getResourceList() {
86	ensureLoaded();	×
87	return resourceList;	×
88	}
89
90	public static List<MaintainedResource> getResourcesBySpace(Space space) {
91	return resourcesBySpace.computeIfAbsent(space, k -> new ArrayList<>());	×
92	}
93
94	/**
95	* Get a maintained resource by its id.
96	*
97	* @param id The id of the resource.
98	* @return The corresponding MaintainedResource object, or null if not found.
99	*/
100	public static MaintainedResource get(String id) {
101	ensureLoaded();	1✔
102	return resourcesById.get(id);	5✔
103	}
104
105	public static MaintainedResource getByNamespace(String namespace) {
106	return resourcesByNamespace.get(namespace);	×
107	}
108
109	public static String getNamespace(Object stringOrIri) {
110	return stringOrIri.toString().replaceFirst("([#/])[^#/]+$", "$1");	×
111	}
112
113	public static void refresh() {
114	refresh(QueryApiAccess.forcedGet(new QueryRef("get-maintained-resources")));	6✔
115	for (MaintainedResource resource : resourceList) {	10✔
116	resource.dataNeedsUpdate = true;	3✔
117	}	1✔
118	}	1✔
119
120	private String id, label, nanopubId, namespace;
121	private Space space;
122	private Nanopub nanopub;
123	private ResourceData data = new ResourceData();	5✔
124
125	private boolean dataInitialized = false;	3✔
126	private boolean dataNeedsUpdate = true;	3✔
127
128	private static class ResourceData implements Serializable {	2✔
129	List<ViewDisplay> topLevelViews = new ArrayList<>();	5✔
130	List<ViewDisplay> partLevelViews = new ArrayList<>();	6✔
131	}
132
133	private MaintainedResource(ApiResponseEntry resp, Space space) {	2✔
134	this.space = space;	3✔
135	this.id = resp.get("resource");	5✔
136	this.label = resp.get("label");	5✔
137	this.nanopubId = resp.get("np");	5✔
138	this.namespace = resp.get("namespace");	5✔
139	if (namespace != null && namespace.isBlank()) namespace = null;	10!
140	this.nanopub = Utils.getAsNanopub(nanopubId);	5✔
141	}	1✔
142
143	public Space getSpace() {
144	return space;	×
145	}
146
147	public String getId() {
148	return id;	3✔
149	}
150
151	public String getNanopubId() {
152	return nanopubId;	×
153	}
154
155	public Nanopub getNanopub() {
156	return nanopub;	×
157	}
158
159	public String getLabel() {
160	return label;	×
161	}
162
163	public String getNamespace() {
164	return namespace;	3✔
165	}
166
167	public boolean isDataInitialized() {
168	triggerDataUpdate();	×
169	return dataInitialized;	×
170	}
171
172	public List<ViewDisplay> getTopLevelViews() {
173	triggerDataUpdate();	×
174	// TODO Check for compliance with target classes here too:
175	return data.topLevelViews;	×
176	}
177
178	public List<ViewDisplay> getPartLevelViews(Set<IRI> classes) {
179	triggerDataUpdate();	×
180	List<ViewDisplay> viewDisplays = new ArrayList<>();	×
181	for (ViewDisplay v : data.partLevelViews) {	×
182	if (v.getView().hasTargetClasses()) {	×
183	for (IRI c : classes) {	×
184	if (v.getView().hasTargetClass(c)) {	×
185	viewDisplays.add(v);	×
186	break;	×
187	}
188	}	×
189	} else {
190	viewDisplays.add(v);	×
191	}
192	}	×
193	return viewDisplays;	×
194	}
195
196	public boolean coversElement(String elementId) {
197	triggerDataUpdate();	×
198	for (ViewDisplay v : data.topLevelViews) {	×
199	if (v.getView().coversElement(elementId)) return true;	×
200	}	×
201	for (ViewDisplay v : data.partLevelViews) {	×
202	if (v.getView().coversElement(elementId)) return true;	×
203	}	×
204	return false;	×
205	}
206
207	private synchronized void triggerDataUpdate() {
208	if (dataNeedsUpdate) {	×
209	new Thread(() -> {	×
210	try {
211	ResourceData newData = new ResourceData();	×
212
213	for (ApiResponseEntry r : QueryApiAccess.get(new QueryRef("get-view-displays", "resource", id)).getData()) {	×
214	if (!space.isAdminPubkey(r.get("pubkey"))) continue;	×
215	try {
216	ViewDisplay vd = ViewDisplay.get(r.get("display"));	×
217	if (KPXL_TERMS.PART_LEVEL_VIEW_DISPLAY.stringValue().equals(r.get("displayType"))) {	×
218	newData.partLevelViews.add(vd);	×
219	} else {
220	newData.topLevelViews.add(vd);	×
221	}
222	} catch (IllegalArgumentException ex) {	×
223	logger.error("Couldn't generate view display object", ex);	×
224	}	×
225	}	×
226	Collections.sort(newData.topLevelViews);	×
227	Collections.sort(newData.partLevelViews);	×
228	data = newData;	×
229	dataInitialized = true;	×
230	} catch (Exception ex) {	×
231	logger.error("Error while trying to update space data: {}", ex);	×
232	dataNeedsUpdate = true;	×
233	}	×
234	}).start();	×
235	dataNeedsUpdate = false;	×
236	}
237	}	×
238
239	@Override
240	public String toString() {
241	return id;	×
242	}
243
244	}

knowledgepixels / nanodash / 19473636483

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