19229148803

Committed 10 Nov 2025 10:52AM UTC coverage: 13.973% (-0.8%) from 14.759%

Build # 19229148803

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push

github

Committed by

web-flow

Commit Message

Merge pull request #280 from knowledgepixels/276-news-items

276 news items

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514 of 4630 branches covered (11.1%)

Branch coverage included in aggregate %.

1333 of 8588 relevant lines covered (15.52%)

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0.0

src/main/java/com/knowledgepixels/nanodash/page/QueryPage.java

package com.knowledgepixels.nanodash.page;

import com.github.jsonldjava.shaded.com.google.common.base.Charsets;
import com.google.common.collect.ArrayListMultimap;
import com.google.common.collect.Multimap;
import com.knowledgepixels.nanodash.GrlcQuery;
import com.knowledgepixels.nanodash.component.QueryParamField;
import com.knowledgepixels.nanodash.component.QueryResultTableBuilder;
import com.knowledgepixels.nanodash.component.TitleBar;
import org.apache.wicket.feedback.FeedbackMessage;
import org.apache.wicket.markup.html.WebMarkupContainer;
import org.apache.wicket.markup.html.basic.Label;
import org.apache.wicket.markup.html.form.Form;
import org.apache.wicket.markup.html.link.BookmarkablePageLink;
import org.apache.wicket.markup.html.link.ExternalLink;
import org.apache.wicket.markup.html.list.ListItem;
import org.apache.wicket.markup.html.list.ListView;
import org.apache.wicket.markup.html.panel.FeedbackPanel;
import org.apache.wicket.request.mapper.parameter.INamedParameters.NamedPair;
import org.apache.wicket.request.mapper.parameter.PageParameters;
import org.apache.wicket.util.string.StringValue;
import org.nanopub.extra.services.QueryRef;

import java.net.URLEncoder;
import java.util.List;

/**
 * Page for displaying a query and its parameters, allowing users to run the query with specified parameters.
 */
public class QueryPage extends NanodashPage {

    /**
     * The mount path for this page.
     */
    public static final String MOUNT_PATH = "/query";

    private final Form<Void> form;
    private final List<QueryParamField> paramFields;
    private final FeedbackPanel feedbackPanel;

    /**
     * {@inheritDoc}
     */
    @Override
    public String getMountPath() {
        return MOUNT_PATH;
    }

    /**
     * Constructor for the QueryPage.
     *
     * @param parameters The page parameters, which should include the query ID and any query parameters.
     */
    public QueryPage(final PageParameters parameters) {
        super(parameters);
        add(new TitleBar("titlebar", this, null));
        add(new Label("pagetitle", "Query Info | nanodash"));

        String id = parameters.get("id").toString();
        final String queryId = parameters.get("runquery").toString();
        if (id == null) id = queryId;

        final Multimap<String, String> queryParams = ArrayListMultimap.create();
        for (NamedPair param : parameters.getAllNamed()) {
            if (!param.getKey().startsWith("queryparam_")) continue;
            queryParams.put(param.getKey().replaceFirst("queryparam_", ""), param.getValue());
        }

        GrlcQuery q = GrlcQuery.get(id);

        add(new Label("querylabel", q.getLabel()));
        add(new BookmarkablePageLink<Void>("np", ExplorePage.class, new PageParameters().set("id", q.getNanopub().getUri().stringValue())));
        // TODO Replace hard-coded domain with dynamic solution:
        add(new ExternalLink("openapi-this", "https://query.knowledgepixels.com/openapi/?url=spec/" + id));
        add(new ExternalLink("openapi-latest", "https://query.knowledgepixels.com/openapi/?url=spec/" + id + "%3Fapi-version=latest"));
        add(new Label("querydesc", q.getDescription()));

        form = new Form<Void>("form") {

            @Override
            protected void onConfigure() {
                super.onConfigure();
                form.getFeedbackMessages().clear();
            }

            @Override
            protected void onSubmit() {
                try {
                    PageParameters params = new PageParameters();
                    params.set("runquery", q.getQueryId());
                    for (QueryParamField f : paramFields) {
                        for (String v : f.getValues()) {
                            params.add("queryparam_" + f.getParamName(), v);
                        }
                    }
                    setResponsePage(QueryPage.class, params);
                } catch (Exception ex) {
                    String message = ex.getClass().getName();
                    if (ex.getMessage() != null) message = ex.getMessage();
                    feedbackPanel.error(message);
                }
            }

            @Override
            protected void onValidate() {
                super.onValidate();
                for (QueryParamField f : paramFields) {
                    f.getFormComponent().processInput();
                    for (FeedbackMessage fm : f.getFormComponent().getFeedbackMessages()) {
                        form.getFeedbackMessages().add(fm);
                    }
                }
            }

        };
        form.setOutputMarkupId(true);

        WebMarkupContainer paramContainer = new WebMarkupContainer("params");

        paramFields = q.createParamFields("paramfield");
        paramContainer.add(new ListView<QueryParamField>("paramfields", paramFields) {

            protected void populateItem(ListItem<QueryParamField> item) {
                QueryParamField f = item.getModelObject();
                for (StringValue parameter : parameters.getValues("queryparam_" + f.getParamName())) {
                    f.putValue(parameter.toString().replaceFirst("\\s*$", ""));
                }
                item.add(item.getModelObject());
            }

        });
        paramContainer.setVisible(!paramFields.isEmpty());
        form.add(paramContainer);

        // TODO Replace hard-coded Nanopub Query URL with dynamic solution:
        String editLink = q.getEndpoint().stringValue().replaceFirst("^.*/repo/", "https://query.petapico.org/tools/") + "/yasgui.html#query=" + URLEncoder.encode(q.getSparql(), Charsets.UTF_8);
        // TODO We also need to replace the nanopub-query placeholder service URLs in the query above.
        // Deactivated for now:
        form.add(new ExternalLink("yasgui", editLink).setVisible(false));

        add(form);

        feedbackPanel = new FeedbackPanel("feedback");
        feedbackPanel.setOutputMarkupId(true);
        add(feedbackPanel);

        if (queryId == null) {
            add(new Label("resulttable").setVisible(false));
        } else {
            add(QueryResultTableBuilder.create("resulttable", new QueryRef(queryId, queryParams), 20).plain(true).build());
        }
    }

    /**
     * <p>hasAutoRefreshEnabled.</p>
     *
     * @return a boolean
     */
    protected boolean hasAutoRefreshEnabled() {
        return true;
    }

}

1	package com.knowledgepixels.nanodash.page;
2
3	import com.github.jsonldjava.shaded.com.google.common.base.Charsets;
4	import com.google.common.collect.ArrayListMultimap;
5	import com.google.common.collect.Multimap;
6	import com.knowledgepixels.nanodash.GrlcQuery;
7	import com.knowledgepixels.nanodash.component.QueryParamField;
8	import com.knowledgepixels.nanodash.component.QueryResultTableBuilder;
9	import com.knowledgepixels.nanodash.component.TitleBar;
10	import org.apache.wicket.feedback.FeedbackMessage;
11	import org.apache.wicket.markup.html.WebMarkupContainer;
12	import org.apache.wicket.markup.html.basic.Label;
13	import org.apache.wicket.markup.html.form.Form;
14	import org.apache.wicket.markup.html.link.BookmarkablePageLink;
15	import org.apache.wicket.markup.html.link.ExternalLink;
16	import org.apache.wicket.markup.html.list.ListItem;
17	import org.apache.wicket.markup.html.list.ListView;
18	import org.apache.wicket.markup.html.panel.FeedbackPanel;
19	import org.apache.wicket.request.mapper.parameter.INamedParameters.NamedPair;
20	import org.apache.wicket.request.mapper.parameter.PageParameters;
21	import org.apache.wicket.util.string.StringValue;
22	import org.nanopub.extra.services.QueryRef;
23
24	import java.net.URLEncoder;
25	import java.util.List;
26
27	/**
28	* Page for displaying a query and its parameters, allowing users to run the query with specified parameters.
29	*/
30	public class QueryPage extends NanodashPage {
31
32	/**
33	* The mount path for this page.
34	*/
35	public static final String MOUNT_PATH = "/query";
36
37	private final Form<Void> form;
38	private final List<QueryParamField> paramFields;
39	private final FeedbackPanel feedbackPanel;
40
41	/**
42	* {@inheritDoc}
43	*/
44	@Override
45	public String getMountPath() {
46	return MOUNT_PATH;	×
47	}
48
49	/**
50	* Constructor for the QueryPage.
51	*
52	* @param parameters The page parameters, which should include the query ID and any query parameters.
53	*/
54	public QueryPage(final PageParameters parameters) {
55	super(parameters);	×
56	add(new TitleBar("titlebar", this, null));	×
57	add(new Label("pagetitle", "Query Info \| nanodash"));	×
58
59	String id = parameters.get("id").toString();	×
60	final String queryId = parameters.get("runquery").toString();	×
61	if (id == null) id = queryId;	×
62
63	final Multimap<String, String> queryParams = ArrayListMultimap.create();	×
64	for (NamedPair param : parameters.getAllNamed()) {	×
65	if (!param.getKey().startsWith("queryparam_")) continue;	×
66	queryParams.put(param.getKey().replaceFirst("queryparam_", ""), param.getValue());	×
67	}	×
68
69	GrlcQuery q = GrlcQuery.get(id);	×
70
71	add(new Label("querylabel", q.getLabel()));	×
72	add(new BookmarkablePageLink<Void>("np", ExplorePage.class, new PageParameters().set("id", q.getNanopub().getUri().stringValue())));	×
73	// TODO Replace hard-coded domain with dynamic solution:
74	add(new ExternalLink("openapi-this", "https://query.knowledgepixels.com/openapi/?url=spec/" + id));	×
75	add(new ExternalLink("openapi-latest", "https://query.knowledgepixels.com/openapi/?url=spec/" + id + "%3Fapi-version=latest"));	×
76	add(new Label("querydesc", q.getDescription()));	×
77
78	form = new Form<Void>("form") {	×
79
80	@Override
81	protected void onConfigure() {
82	super.onConfigure();	×
83	form.getFeedbackMessages().clear();	×
84	}	×
85
86	@Override
87	protected void onSubmit() {
88	try {
89	PageParameters params = new PageParameters();	×
90	params.set("runquery", q.getQueryId());	×
91	for (QueryParamField f : paramFields) {	×
92	for (String v : f.getValues()) {	×
93	params.add("queryparam_" + f.getParamName(), v);	×
94	}
95	}	×
96	setResponsePage(QueryPage.class, params);	×
97	} catch (Exception ex) {	×
98	String message = ex.getClass().getName();	×
99	if (ex.getMessage() != null) message = ex.getMessage();	×
100	feedbackPanel.error(message);	×
101	}	×
102	}	×
103
104	@Override
105	protected void onValidate() {
106	super.onValidate();	×
107	for (QueryParamField f : paramFields) {	×
108	f.getFormComponent().processInput();	×
109	for (FeedbackMessage fm : f.getFormComponent().getFeedbackMessages()) {	×
110	form.getFeedbackMessages().add(fm);	×
111	}	×
112	}	×
113	}	×
114
115	};
116	form.setOutputMarkupId(true);	×
117
118	WebMarkupContainer paramContainer = new WebMarkupContainer("params");	×
119
120	paramFields = q.createParamFields("paramfield");	×
121	paramContainer.add(new ListView<QueryParamField>("paramfields", paramFields) {	×
122
123	protected void populateItem(ListItem<QueryParamField> item) {
124	QueryParamField f = item.getModelObject();	×
125	for (StringValue parameter : parameters.getValues("queryparam_" + f.getParamName())) {	×
126	f.putValue(parameter.toString().replaceFirst("\\s*$", ""));	×
127	}	×
128	item.add(item.getModelObject());	×
129	}	×
130
131	});
132	paramContainer.setVisible(!paramFields.isEmpty());	×
133	form.add(paramContainer);	×
134
135	// TODO Replace hard-coded Nanopub Query URL with dynamic solution:
136	String editLink = q.getEndpoint().stringValue().replaceFirst("^.*/repo/", "https://query.petapico.org/tools/") + "/yasgui.html#query=" + URLEncoder.encode(q.getSparql(), Charsets.UTF_8);	×
137	// TODO We also need to replace the nanopub-query placeholder service URLs in the query above.
138	// Deactivated for now:
139	form.add(new ExternalLink("yasgui", editLink).setVisible(false));	×
140
141	add(form);	×
142
143	feedbackPanel = new FeedbackPanel("feedback");	×
144	feedbackPanel.setOutputMarkupId(true);	×
145	add(feedbackPanel);	×
146
147	if (queryId == null) {	×
148	add(new Label("resulttable").setVisible(false));	×
149	} else {
150	add(QueryResultTableBuilder.create("resulttable", new QueryRef(queryId, queryParams), 20).plain(true).build());	×
151	}
152	}	×
153
154	/**
155	* <p>hasAutoRefreshEnabled.</p>
156	*
157	* @return a boolean
158	*/
159	protected boolean hasAutoRefreshEnabled() {
160	return true;	×
161	}
162
163	}

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