#394

Committed 31 Oct 2025 04:10PM UTC coverage: 57.972% (-1.6%) from 59.538%

Build # #394

Build Type

push

github

Committed by

mr-c

Commit Message

rename package to a namespace that we control

Coverage Stats

7575 of 12994 new or added lines in 261 files covered. (58.3%)

7752 of 13372 relevant lines covered (57.97%)

0.58 hits per line

Source File
Press 'n' to go to next uncovered line, 'b' for previous

61.65

/src/main/java/org/commonwl/cwlsdk/cwl1_1/ExpressionToolImpl.java

// Copyright Common Workflow Language project contributors
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
//      http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.

package org.commonwl.cwlsdk.cwl1_1;

import org.commonwl.cwlsdk.cwl1_1.utils.LoaderInstances;
import org.commonwl.cwlsdk.cwl1_1.utils.LoadingOptions;
import org.commonwl.cwlsdk.cwl1_1.utils.LoadingOptionsBuilder;
import org.commonwl.cwlsdk.cwl1_1.utils.SaveableImpl;
import org.commonwl.cwlsdk.cwl1_1.utils.ValidationException;

/**
* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#ExpressionTool</I><BR> <BLOCKQUOTE>
 An ExpressionTool is a type of Process object that can be run by itself
 or as a Workflow step. It executes a pure Javascript expression that has
 access to the same input parameters as a workflow. It is meant to be used
 sparingly as a way to isolate complex Javascript expressions that need to
 operate on input data and produce some result; perhaps just a
 rearrangement of the inputs. No Docker software container is required
 or allowed.
  </BLOCKQUOTE>
 */
public class ExpressionToolImpl extends SaveableImpl implements ExpressionTool {
  private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();
  private java.util.Map<String, Object> extensionFields_ =
      new java.util.HashMap<String, Object>();
  public LoadingOptions getLoadingOptions() {
    return this.loadingOptions_;
  }
  public java.util.Map<String, Object> getExtensionFields() {
    return this.extensionFields_;
  }

  private java.util.Optional<String> id;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#Identified/id</I><BR>
   * <BLOCKQUOTE>
   * The unique identifier for this object.   * </BLOCKQUOTE>
   */

  public java.util.Optional<String> getId() {
    return this.id;
  }

  private ExpressionTool_class class_;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#ExpressionTool/class</I><BR>

   */

  public ExpressionTool_class getClass_() {
    return this.class_;
  }

  private java.util.Optional<String> label;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#Labeled/label</I><BR>
   * <BLOCKQUOTE>
   * A short, human-readable label of this object.   * </BLOCKQUOTE>
   */

  public java.util.Optional<String> getLabel() {
    return this.label;
  }

  private Object doc;

  /**
   * Getter for property <I>https://w3id.org/cwl/salad#Documented/doc</I><BR>
   * <BLOCKQUOTE>
   * A documentation string for this object, or an array of strings which should be concatenated.   * </BLOCKQUOTE>
   */

  public Object getDoc() {
    return this.doc;
  }

  private java.util.List<Object> inputs;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#inputs</I><BR>
   * <BLOCKQUOTE>
   * Defines the input parameters of the process.  The process is ready to
   * run when all required input parameters are associated with concrete
   * values.  Input parameters include a schema for each parameter which is
   * used to validate the input object.  It may also be used to build a user
   * interface for constructing the input object.
   * 
   * When accepting an input object, all input parameters must have a value.
   * If an input parameter is missing from the input object, it must be
   * assigned a value of `null` (or the value of `default` for that
   * parameter, if provided) for the purposes of validation and evaluation
   * of expressions.
   *    * </BLOCKQUOTE>
   */

  public java.util.List<Object> getInputs() {
    return this.inputs;
  }

  private java.util.List<Object> outputs;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#outputs</I><BR>
   * <BLOCKQUOTE>
   * Defines the parameters representing the output of the process.  May be
   * used to generate and/or validate the output object.
   *    * </BLOCKQUOTE>
   */

  public java.util.List<Object> getOutputs() {
    return this.outputs;
  }

  private java.util.Optional<java.util.List<Object>> requirements;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#requirements</I><BR>
   * <BLOCKQUOTE>
   * Declares requirements that apply to either the runtime environment or the
   * workflow engine that must be met in order to execute this process.  If
   * an implementation cannot satisfy all requirements, or a requirement is
   * listed which is not recognized by the implementation, it is a fatal
   * error and the implementation must not attempt to run the process,
   * unless overridden at user option.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<java.util.List<Object>> getRequirements() {
    return this.requirements;
  }

  private java.util.Optional<java.util.List<Object>> hints;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#hints</I><BR>
   * <BLOCKQUOTE>
   * Declares hints applying to either the runtime environment or the
   * workflow engine that may be helpful in executing this process.  It is
   * not an error if an implementation cannot satisfy all hints, however
   * the implementation may report a warning.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<java.util.List<Object>> getHints() {
    return this.hints;
  }

  private java.util.Optional<CWLVersion> cwlVersion;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#cwlVersion</I><BR>
   * <BLOCKQUOTE>
   * CWL document version. Always required at the document root. Not
   * required for a Process embedded inside another Process.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<CWLVersion> getCwlVersion() {
    return this.cwlVersion;
  }

  private String expression;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#ExpressionTool/expression</I><BR>
   * <BLOCKQUOTE>
   * The expression to execute.  The expression must return a JSON object which
   * matches the output parameters of the ExpressionTool.
   *    * </BLOCKQUOTE>
   */

  public String getExpression() {
    return this.expression;
  }

  /**
   * Used by {@link org.commonwl.cwlsdk.cwl1_1.utils.RootLoader} to construct instances of ExpressionToolImpl.
   *
   * @param __doc_            Document fragment to load this record object from (presumably a
                              {@link java.util.Map}).
   * @param __baseUri_        Base URI to generate child document IDs against.
   * @param __loadingOptions  Context for loading URIs and populating objects.
   * @param __docRoot_        ID at this position in the document (if available) (maybe?)
   * @throws ValidationException If the document fragment is not a {@link java.util.Map}
   *                             or validation of fields fails.
   */
  public ExpressionToolImpl(
      final Object __doc_,
      final String __baseUri_,
      LoadingOptions __loadingOptions,
      final String __docRoot_) {
    super(__doc_, __baseUri_, __loadingOptions, __docRoot_);
    // Prefix plumbing variables with '__' to reduce likelihood of collision with
    // generated names.
    String __baseUri = __baseUri_;
    String __docRoot = __docRoot_;
    if (!(__doc_ instanceof java.util.Map)) {
      throw new ValidationException("ExpressionToolImpl called on non-map");
    }
    final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;
    final java.util.List<ValidationException> __errors =
        new java.util.ArrayList<ValidationException>();
    if (__loadingOptions != null) {
      this.loadingOptions_ = __loadingOptions;
    }
    java.util.Optional<String> id;

    if (__doc.containsKey("id")) {
      try {
        id =
            LoaderInstances
                .uri_optional_StringInstance_True_False_None_None
                .loadField(__doc.get("id"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        id = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `id` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      id = null;
    }

    Boolean __original_is_null = id == null;
    if (id == null) {
      if (__docRoot != null) {
        id = java.util.Optional.of(__docRoot);
      } else {
        id = java.util.Optional.of("_:" + java.util.UUID.randomUUID().toString());
      }
    }
    if (__original_is_null) {
        __baseUri = __baseUri_;
    } else {
        __baseUri = (String) id.orElse(null);
    }
    ExpressionTool_class class_;
    try {
      class_ =
          LoaderInstances
              .uri_ExpressionTool_class_False_True_None_None
              .loadField(__doc.get("class"), __baseUri, __loadingOptions);
    } catch (ValidationException e) {
      class_ = null; // won't be used but prevents compiler from complaining.
      final String __message = "the `class` field is not valid because:";
      __errors.add(new ValidationException(__message, e));
    }
    java.util.Optional<String> label;

    if (__doc.containsKey("label")) {
      try {
        label =
            LoaderInstances
                .optional_StringInstance
                .loadField(__doc.get("label"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        label = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `label` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      label = null;
    }
    Object doc;

    if (__doc.containsKey("doc")) {
      try {
        doc =
            LoaderInstances
                .union_of_NullInstance_or_StringInstance_or_array_of_StringInstance
                .loadField(__doc.get("doc"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        doc = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `doc` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      doc = null;
    }
    java.util.List<Object> inputs;
    try {
      inputs =
          LoaderInstances
              .idmap_inputs_array_of_WorkflowInputParameter
              .loadField(__doc.get("inputs"), __baseUri, __loadingOptions);
    } catch (ValidationException e) {
      inputs = null; // won't be used but prevents compiler from complaining.
      final String __message = "the `inputs` field is not valid because:";
      __errors.add(new ValidationException(__message, e));
    }
    java.util.List<Object> outputs;
    try {
      outputs =
          LoaderInstances
              .idmap_outputs_array_of_ExpressionToolOutputParameter
              .loadField(__doc.get("outputs"), __baseUri, __loadingOptions);
    } catch (ValidationException e) {
      outputs = null; // won't be used but prevents compiler from complaining.
      final String __message = "the `outputs` field is not valid because:";
      __errors.add(new ValidationException(__message, e));
    }
    java.util.Optional<java.util.List<Object>> requirements;

    if (__doc.containsKey("requirements")) {
      try {
        requirements =
            LoaderInstances
                .idmap_requirements_optional_array_of_union_of_InlineJavascriptRequirement_or_SchemaDefRequirement_or_LoadListingRequirement_or_DockerRequirement_or_SoftwareRequirement_or_InitialWorkDirRequirement_or_EnvVarRequirement_or_ShellCommandRequirement_or_ResourceRequirement_or_WorkReuse_or_NetworkAccess_or_InplaceUpdateRequirement_or_ToolTimeLimit_or_SubworkflowFeatureRequirement_or_ScatterFeatureRequirement_or_MultipleInputFeatureRequirement_or_StepInputExpressionRequirement
                .loadField(__doc.get("requirements"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        requirements = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `requirements` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      requirements = null;
    }
    java.util.Optional<java.util.List<Object>> hints;

    if (__doc.containsKey("hints")) {
      try {
        hints =
            LoaderInstances
                .idmap_hints_optional_array_of_union_of_InlineJavascriptRequirement_or_SchemaDefRequirement_or_LoadListingRequirement_or_DockerRequirement_or_SoftwareRequirement_or_InitialWorkDirRequirement_or_EnvVarRequirement_or_ShellCommandRequirement_or_ResourceRequirement_or_WorkReuse_or_NetworkAccess_or_InplaceUpdateRequirement_or_ToolTimeLimit_or_SubworkflowFeatureRequirement_or_ScatterFeatureRequirement_or_MultipleInputFeatureRequirement_or_StepInputExpressionRequirement_or_AnyInstance
                .loadField(__doc.get("hints"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        hints = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `hints` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      hints = null;
    }
    java.util.Optional<CWLVersion> cwlVersion;

    if (__doc.containsKey("cwlVersion")) {
      try {
        cwlVersion =
            LoaderInstances
                .uri_optional_CWLVersion_False_True_None_None
                .loadField(__doc.get("cwlVersion"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        cwlVersion = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `cwlVersion` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      cwlVersion = null;
    }
    String expression;
    try {
      expression =
          LoaderInstances
              .ExpressionLoader
              .loadField(__doc.get("expression"), __baseUri, __loadingOptions);
    } catch (ValidationException e) {
      expression = null; // won't be used but prevents compiler from complaining.
      final String __message = "the `expression` field is not valid because:";
      __errors.add(new ValidationException(__message, e));
    }
    if (!__errors.isEmpty()) {
      throw new ValidationException("Trying 'RecordField'", __errors);
    }
    this.id = (java.util.Optional<String>) id;
    this.label = (java.util.Optional<String>) label;
    this.doc = (Object) doc;
    this.inputs = (java.util.List<Object>) inputs;
    this.outputs = (java.util.List<Object>) outputs;
    this.requirements = (java.util.Optional<java.util.List<Object>>) requirements;
    this.hints = (java.util.Optional<java.util.List<Object>>) hints;
    this.cwlVersion = (java.util.Optional<CWLVersion>) cwlVersion;
    this.class_ = (ExpressionTool_class) class_;
    this.expression = (String) expression;
    for (String field:__doc.keySet()) {
      if (!attrs.contains(field)) {
        if (field.contains(":")) {
          String expanded_field = __loadingOptions.expandUrl(field, "", false, false, null);
          extensionFields_.put(expanded_field, __doc.get(field));
        }
      }
    }
  }
  private java.util.List<String> attrs = java.util.Arrays.asList("id", "label", "doc", "inputs", "outputs", "requirements", "hints", "cwlVersion", "class", "expression");
}

1	// Copyright Common Workflow Language project contributors
2	//
3	// Licensed under the Apache License, Version 2.0 (the "License");
4	// you may not use this file except in compliance with the License.
5	// You may obtain a copy of the License at
6	//
7	// http://www.apache.org/licenses/LICENSE-2.0
8	//
9	// Unless required by applicable law or agreed to in writing, software
10	// distributed under the License is distributed on an "AS IS" BASIS,
11	// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12	// See the License for the specific language governing permissions and
13	// limitations under the License.
14
15	package org.commonwl.cwlsdk.cwl1_1;
16
17	import org.commonwl.cwlsdk.cwl1_1.utils.LoaderInstances;
18	import org.commonwl.cwlsdk.cwl1_1.utils.LoadingOptions;
19	import org.commonwl.cwlsdk.cwl1_1.utils.LoadingOptionsBuilder;
20	import org.commonwl.cwlsdk.cwl1_1.utils.SaveableImpl;
21	import org.commonwl.cwlsdk.cwl1_1.utils.ValidationException;
22
23	/**
24	* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#ExpressionTool</I><BR> <BLOCKQUOTE>
25	An ExpressionTool is a type of Process object that can be run by itself
26	or as a Workflow step. It executes a pure Javascript expression that has
27	access to the same input parameters as a workflow. It is meant to be used
28	sparingly as a way to isolate complex Javascript expressions that need to
29	operate on input data and produce some result; perhaps just a
30	rearrangement of the inputs. No Docker software container is required
31	or allowed.
32	</BLOCKQUOTE>
33	*/
34	public class ExpressionToolImpl extends SaveableImpl implements ExpressionTool {
35	private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();	1✔
36	private java.util.Map<String, Object> extensionFields_ =	1✔
37	new java.util.HashMap<String, Object>();
38	public LoadingOptions getLoadingOptions() {
NEW 39	return this.loadingOptions_;	×
40	}
41	public java.util.Map<String, Object> getExtensionFields() {
NEW 42	return this.extensionFields_;	×
43	}
44
45	private java.util.Optional<String> id;
46
47	/**
48	* Getter for property <I>https://w3id.org/cwl/cwl#Identified/id</I><BR>
49	* <BLOCKQUOTE>
50	* The unique identifier for this object. * </BLOCKQUOTE>
51	*/
52
53	public java.util.Optional<String> getId() {
NEW 54	return this.id;	×
55	}
56
57	private ExpressionTool_class class_;
58
59	/**
60	* Getter for property <I>https://w3id.org/cwl/cwl#ExpressionTool/class</I><BR>
61
62	*/
63
64	public ExpressionTool_class getClass_() {
NEW 65	return this.class_;	×
66	}
67
68	private java.util.Optional<String> label;
69
70	/**
71	* Getter for property <I>https://w3id.org/cwl/cwl#Labeled/label</I><BR>
72	* <BLOCKQUOTE>
73	* A short, human-readable label of this object. * </BLOCKQUOTE>
74	*/
75
76	public java.util.Optional<String> getLabel() {
NEW 77	return this.label;	×
78	}
79
80	private Object doc;
81
82	/**
83	* Getter for property <I>https://w3id.org/cwl/salad#Documented/doc</I><BR>
84	* <BLOCKQUOTE>
85	* A documentation string for this object, or an array of strings which should be concatenated. * </BLOCKQUOTE>
86	*/
87
88	public Object getDoc() {
NEW 89	return this.doc;	×
90	}
91
92	private java.util.List<Object> inputs;
93
94	/**
95	* Getter for property <I>https://w3id.org/cwl/cwl#inputs</I><BR>
96	* <BLOCKQUOTE>
97	* Defines the input parameters of the process. The process is ready to
98	* run when all required input parameters are associated with concrete
99	* values. Input parameters include a schema for each parameter which is
100	* used to validate the input object. It may also be used to build a user
101	* interface for constructing the input object.
102	*
103	* When accepting an input object, all input parameters must have a value.
104	* If an input parameter is missing from the input object, it must be
105	* assigned a value of `null` (or the value of `default` for that
106	* parameter, if provided) for the purposes of validation and evaluation
107	* of expressions.
108	* * </BLOCKQUOTE>
109	*/
110
111	public java.util.List<Object> getInputs() {
NEW 112	return this.inputs;	×
113	}
114
115	private java.util.List<Object> outputs;
116
117	/**
118	* Getter for property <I>https://w3id.org/cwl/cwl#outputs</I><BR>
119	* <BLOCKQUOTE>
120	* Defines the parameters representing the output of the process. May be
121	* used to generate and/or validate the output object.
122	* * </BLOCKQUOTE>
123	*/
124
125	public java.util.List<Object> getOutputs() {
NEW 126	return this.outputs;	×
127	}
128
129	private java.util.Optional<java.util.List<Object>> requirements;
130
131	/**
132	* Getter for property <I>https://w3id.org/cwl/cwl#requirements</I><BR>
133	* <BLOCKQUOTE>
134	* Declares requirements that apply to either the runtime environment or the
135	* workflow engine that must be met in order to execute this process. If
136	* an implementation cannot satisfy all requirements, or a requirement is
137	* listed which is not recognized by the implementation, it is a fatal
138	* error and the implementation must not attempt to run the process,
139	* unless overridden at user option.
140	* * </BLOCKQUOTE>
141	*/
142
143	public java.util.Optional<java.util.List<Object>> getRequirements() {
NEW 144	return this.requirements;	×
145	}
146
147	private java.util.Optional<java.util.List<Object>> hints;
148
149	/**
150	* Getter for property <I>https://w3id.org/cwl/cwl#hints</I><BR>
151	* <BLOCKQUOTE>
152	* Declares hints applying to either the runtime environment or the
153	* workflow engine that may be helpful in executing this process. It is
154	* not an error if an implementation cannot satisfy all hints, however
155	* the implementation may report a warning.
156	* * </BLOCKQUOTE>
157	*/
158
159	public java.util.Optional<java.util.List<Object>> getHints() {
NEW 160	return this.hints;	×
161	}
162
163	private java.util.Optional<CWLVersion> cwlVersion;
164
165	/**
166	* Getter for property <I>https://w3id.org/cwl/cwl#cwlVersion</I><BR>
167	* <BLOCKQUOTE>
168	* CWL document version. Always required at the document root. Not
169	* required for a Process embedded inside another Process.
170	* * </BLOCKQUOTE>
171	*/
172
173	public java.util.Optional<CWLVersion> getCwlVersion() {
NEW 174	return this.cwlVersion;	×
175	}
176
177	private String expression;
178
179	/**
180	* Getter for property <I>https://w3id.org/cwl/cwl#ExpressionTool/expression</I><BR>
181	* <BLOCKQUOTE>
182	* The expression to execute. The expression must return a JSON object which
183	* matches the output parameters of the ExpressionTool.
184	* * </BLOCKQUOTE>
185	*/
186
187	public String getExpression() {
NEW 188	return this.expression;	×
189	}
190
191	/**
192	* Used by {@link org.commonwl.cwlsdk.cwl1_1.utils.RootLoader} to construct instances of ExpressionToolImpl.
193	*
194	* @param __doc_ Document fragment to load this record object from (presumably a
195	{@link java.util.Map}).
196	* @param __baseUri_ Base URI to generate child document IDs against.
197	* @param __loadingOptions Context for loading URIs and populating objects.
198	* @param __docRoot_ ID at this position in the document (if available) (maybe?)
199	* @throws ValidationException If the document fragment is not a {@link java.util.Map}
200	* or validation of fields fails.
201	*/
202	public ExpressionToolImpl(
203	final Object __doc_,
204	final String __baseUri_,
205	LoadingOptions __loadingOptions,
206	final String __docRoot_) {
207	super(__doc_, __baseUri_, __loadingOptions, __docRoot_);	1✔
208	// Prefix plumbing variables with '__' to reduce likelihood of collision with
209	// generated names.
210	String __baseUri = __baseUri_;	1✔
211	String __docRoot = __docRoot_;	1✔
212	if (!(__doc_ instanceof java.util.Map)) {	1✔
NEW 213	throw new ValidationException("ExpressionToolImpl called on non-map");	×
214	}
215	final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;	1✔
216	final java.util.List<ValidationException> __errors =	1✔
217	new java.util.ArrayList<ValidationException>();
218	if (__loadingOptions != null) {	1✔
219	this.loadingOptions_ = __loadingOptions;	1✔
220	}
221	java.util.Optional<String> id;
222
223	if (__doc.containsKey("id")) {	1✔
224	try {
225	id =	1✔
226	LoaderInstances
227	.uri_optional_StringInstance_True_False_None_None
228	.loadField(__doc.get("id"), __baseUri, __loadingOptions);	1✔
NEW 229	} catch (ValidationException e) {	×
NEW 230	id = null; // won't be used but prevents compiler from complaining.	×
NEW 231	final String __message = "the `id` field is not valid because:";	×
NEW 232	__errors.add(new ValidationException(__message, e));	×
233	}	1✔
234
235	} else {
236	id = null;	1✔
237	}
238
239	Boolean __original_is_null = id == null;	1✔
240	if (id == null) {	1✔
241	if (__docRoot != null) {	1✔
242	id = java.util.Optional.of(__docRoot);	1✔
243	} else {
244	id = java.util.Optional.of("_:" + java.util.UUID.randomUUID().toString());	1✔
245	}
246	}
247	if (__original_is_null) {	1✔
248	__baseUri = __baseUri_;	1✔
249	} else {
250	__baseUri = (String) id.orElse(null);	1✔
251	}
252	ExpressionTool_class class_;
253	try {
254	class_ =	1✔
255	LoaderInstances
256	.uri_ExpressionTool_class_False_True_None_None
257	.loadField(__doc.get("class"), __baseUri, __loadingOptions);	1✔
258	} catch (ValidationException e) {	1✔
259	class_ = null; // won't be used but prevents compiler from complaining.	1✔
260	final String __message = "the `class` field is not valid because:";	1✔
261	__errors.add(new ValidationException(__message, e));	1✔
262	}	1✔
263	java.util.Optional<String> label;
264
265	if (__doc.containsKey("label")) {	1✔
266	try {
NEW 267	label =	×
268	LoaderInstances
269	.optional_StringInstance
NEW 270	.loadField(__doc.get("label"), __baseUri, __loadingOptions);	×
NEW 271	} catch (ValidationException e) {	×
NEW 272	label = null; // won't be used but prevents compiler from complaining.	×
NEW 273	final String __message = "the `label` field is not valid because:";	×
NEW 274	__errors.add(new ValidationException(__message, e));	×
NEW 275	}	×
276
277	} else {
278	label = null;	1✔
279	}
280	Object doc;
281
282	if (__doc.containsKey("doc")) {	1✔
283	try {
284	doc =	1✔
285	LoaderInstances
286	.union_of_NullInstance_or_StringInstance_or_array_of_StringInstance
287	.loadField(__doc.get("doc"), __baseUri, __loadingOptions);	1✔
NEW 288	} catch (ValidationException e) {	×
NEW 289	doc = null; // won't be used but prevents compiler from complaining.	×
NEW 290	final String __message = "the `doc` field is not valid because:";	×
NEW 291	__errors.add(new ValidationException(__message, e));	×
292	}	1✔
293
294	} else {
295	doc = null;	1✔
296	}
297	java.util.List<Object> inputs;
298	try {
299	inputs =	1✔
300	LoaderInstances
301	.idmap_inputs_array_of_WorkflowInputParameter
302	.loadField(__doc.get("inputs"), __baseUri, __loadingOptions);	1✔
NEW 303	} catch (ValidationException e) {	×
NEW 304	inputs = null; // won't be used but prevents compiler from complaining.	×
NEW 305	final String __message = "the `inputs` field is not valid because:";	×
NEW 306	__errors.add(new ValidationException(__message, e));	×
307	}	1✔
308	java.util.List<Object> outputs;
309	try {
310	outputs =	1✔
311	LoaderInstances
312	.idmap_outputs_array_of_ExpressionToolOutputParameter
313	.loadField(__doc.get("outputs"), __baseUri, __loadingOptions);	1✔
NEW 314	} catch (ValidationException e) {	×
NEW 315	outputs = null; // won't be used but prevents compiler from complaining.	×
NEW 316	final String __message = "the `outputs` field is not valid because:";	×
NEW 317	__errors.add(new ValidationException(__message, e));	×
318	}	1✔
319	java.util.Optional<java.util.List<Object>> requirements;
320
321	if (__doc.containsKey("requirements")) {	1✔
322	try {
323	requirements =	1✔
324	LoaderInstances
325	.idmap_requirements_optional_array_of_union_of_InlineJavascriptRequirement_or_SchemaDefRequirement_or_LoadListingRequirement_or_DockerRequirement_or_SoftwareRequirement_or_InitialWorkDirRequirement_or_EnvVarRequirement_or_ShellCommandRequirement_or_ResourceRequirement_or_WorkReuse_or_NetworkAccess_or_InplaceUpdateRequirement_or_ToolTimeLimit_or_SubworkflowFeatureRequirement_or_ScatterFeatureRequirement_or_MultipleInputFeatureRequirement_or_StepInputExpressionRequirement
326	.loadField(__doc.get("requirements"), __baseUri, __loadingOptions);	1✔
NEW 327	} catch (ValidationException e) {	×
NEW 328	requirements = null; // won't be used but prevents compiler from complaining.	×
NEW 329	final String __message = "the `requirements` field is not valid because:";	×
NEW 330	__errors.add(new ValidationException(__message, e));	×
331	}	1✔
332
333	} else {
334	requirements = null;	1✔
335	}
336	java.util.Optional<java.util.List<Object>> hints;
337
338	if (__doc.containsKey("hints")) {	1✔
339	try {
340	hints =	1✔
341	LoaderInstances
342	.idmap_hints_optional_array_of_union_of_InlineJavascriptRequirement_or_SchemaDefRequirement_or_LoadListingRequirement_or_DockerRequirement_or_SoftwareRequirement_or_InitialWorkDirRequirement_or_EnvVarRequirement_or_ShellCommandRequirement_or_ResourceRequirement_or_WorkReuse_or_NetworkAccess_or_InplaceUpdateRequirement_or_ToolTimeLimit_or_SubworkflowFeatureRequirement_or_ScatterFeatureRequirement_or_MultipleInputFeatureRequirement_or_StepInputExpressionRequirement_or_AnyInstance
343	.loadField(__doc.get("hints"), __baseUri, __loadingOptions);	1✔
NEW 344	} catch (ValidationException e) {	×
NEW 345	hints = null; // won't be used but prevents compiler from complaining.	×
NEW 346	final String __message = "the `hints` field is not valid because:";	×
NEW 347	__errors.add(new ValidationException(__message, e));	×
348	}	1✔
349
350	} else {
351	hints = null;	1✔
352	}
353	java.util.Optional<CWLVersion> cwlVersion;
354
355	if (__doc.containsKey("cwlVersion")) {	1✔
356	try {
357	cwlVersion =	1✔
358	LoaderInstances
359	.uri_optional_CWLVersion_False_True_None_None
360	.loadField(__doc.get("cwlVersion"), __baseUri, __loadingOptions);	1✔
NEW 361	} catch (ValidationException e) {	×
NEW 362	cwlVersion = null; // won't be used but prevents compiler from complaining.	×
NEW 363	final String __message = "the `cwlVersion` field is not valid because:";	×
NEW 364	__errors.add(new ValidationException(__message, e));	×
365	}	1✔
366
367	} else {
368	cwlVersion = null;	1✔
369	}
370	String expression;
371	try {
372	expression =	1✔
373	LoaderInstances
374	.ExpressionLoader
375	.loadField(__doc.get("expression"), __baseUri, __loadingOptions);	1✔
376	} catch (ValidationException e) {	1✔
377	expression = null; // won't be used but prevents compiler from complaining.	1✔
378	final String __message = "the `expression` field is not valid because:";	1✔
379	__errors.add(new ValidationException(__message, e));	1✔
380	}	1✔
381	if (!__errors.isEmpty()) {	1✔
382	throw new ValidationException("Trying 'RecordField'", __errors);	1✔
383	}
384	this.id = (java.util.Optional<String>) id;	1✔
385	this.label = (java.util.Optional<String>) label;	1✔
386	this.doc = (Object) doc;	1✔
387	this.inputs = (java.util.List<Object>) inputs;	1✔
388	this.outputs = (java.util.List<Object>) outputs;	1✔
389	this.requirements = (java.util.Optional<java.util.List<Object>>) requirements;	1✔
390	this.hints = (java.util.Optional<java.util.List<Object>>) hints;	1✔
391	this.cwlVersion = (java.util.Optional<CWLVersion>) cwlVersion;	1✔
392	this.class_ = (ExpressionTool_class) class_;	1✔
393	this.expression = (String) expression;	1✔
394	for (String field:__doc.keySet()) {	1✔
395	if (!attrs.contains(field)) {	1✔
NEW 396	if (field.contains(":")) {	×
NEW 397	String expanded_field = __loadingOptions.expandUrl(field, "", false, false, null);	×
NEW 398	extensionFields_.put(expanded_field, __doc.get(field));	×
399	}
400	}
401	}	1✔
402	}	1✔
403	private java.util.List<String> attrs = java.util.Arrays.asList("id", "label", "doc", "inputs", "outputs", "requirements", "hints", "cwlVersion", "class", "expression");	1✔
404	}

common-workflow-language / cwljava / #394

Source File Press 'n' to go to next uncovered line, 'b' for previous

Source File
Press 'n' to go to next uncovered line, 'b' for previous