#394

Committed 31 Oct 2025 04:10PM UTC coverage: 57.972% (-1.6%) from 59.538%

Build # #394

Build Type

push

github

Committed by

mr-c

Commit Message

rename package to a namespace that we control

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7575 of 12994 new or added lines in 261 files covered. (58.3%)

7752 of 13372 relevant lines covered (57.97%)

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51.28

/src/main/java/org/commonwl/cwlsdk/cwl1_1/CommandOutputParameterImpl.java

// Copyright Common Workflow Language project contributors
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
//      http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.

package org.commonwl.cwlsdk.cwl1_1;

import org.commonwl.cwlsdk.cwl1_1.utils.LoaderInstances;
import org.commonwl.cwlsdk.cwl1_1.utils.LoadingOptions;
import org.commonwl.cwlsdk.cwl1_1.utils.LoadingOptionsBuilder;
import org.commonwl.cwlsdk.cwl1_1.utils.SaveableImpl;
import org.commonwl.cwlsdk.cwl1_1.utils.ValidationException;

/**
* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#CommandOutputParameter</I><BR> <BLOCKQUOTE>
 An output parameter for a CommandLineTool. </BLOCKQUOTE>
 */
public class CommandOutputParameterImpl extends SaveableImpl implements CommandOutputParameter {
  private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();
  private java.util.Map<String, Object> extensionFields_ =
      new java.util.HashMap<String, Object>();
  public LoadingOptions getLoadingOptions() {
    return this.loadingOptions_;
  }
  public java.util.Map<String, Object> getExtensionFields() {
    return this.extensionFields_;
  }

  private java.util.Optional<String> id;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#Identified/id</I><BR>
   * <BLOCKQUOTE>
   * The unique identifier for this object.   * </BLOCKQUOTE>
   */

  public java.util.Optional<String> getId() {
    return this.id;
  }

  private java.util.Optional<String> label;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#Labeled/label</I><BR>
   * <BLOCKQUOTE>
   * A short, human-readable label of this object.   * </BLOCKQUOTE>
   */

  public java.util.Optional<String> getLabel() {
    return this.label;
  }

  private Object secondaryFiles;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#secondaryFiles</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: File` or is an array of `items: File`.
   * 
   * Provides a pattern or expression specifying files or
   * directories that should be included alongside the primary
   * file.  Secondary files may be required or optional.  When not
   * explicitly specified, secondary files specified for `inputs`
   * are required and `outputs` are optional.  An implementation
   * must include matching Files and Directories in the
   * `secondaryFiles` property of the primary file.  These Files
   * and Directories must be transferred and staged alongside the
   * primary file.  An implementation may fail workflow execution
   * if a required secondary file does not exist.
   * 
   * If the value is an expression, the value of `self` in the expression
   * must be the primary input or output File object to which this binding
   * applies.  The `basename`, `nameroot` and `nameext` fields must be
   * present in `self`.  For `CommandLineTool` outputs the `path` field must
   * also be present.  The expression must return a filename string relative
   * to the path to the primary File, a File or Directory object with either
   * `path` or `location` and `basename` fields set, or an array consisting
   * of strings or File or Directory objects.  It is legal to reference an
   * unchanged File or Directory object taken from input as a secondaryFile.
   * The expression may return "null" in which case there is no secondaryFile
   * from that expression.
   * 
   * To work on non-filename-preserving storage systems, portable tool
   * descriptions should avoid constructing new values from `location`, but
   * should construct relative references using `basename` or `nameroot`
   * instead.
   * 
   * If a value in `secondaryFiles` is a string that is not an expression,
   * it specifies that the following pattern should be applied to the path
   * of the primary file to yield a filename relative to the primary File:
   * 
   *   1. If string ends with `?` character, remove the last `?` and mark
   *     the resulting secondary file as optional.
   *   2. If string begins with one or more caret `^` characters, for each
   *     caret, remove the last file extension from the path (the last
   *     period `.` and all following characters).  If there are no file
   *     extensions, the path is unchanged.
   *   3. Append the remainder of the string to the end of the file path.
   *    * </BLOCKQUOTE>
   */

  public Object getSecondaryFiles() {
    return this.secondaryFiles;
  }

  private java.util.Optional<Boolean> streamable;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#FieldBase/streamable</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: File` or is an array of `items: File`.
   * 
   * A value of `true` indicates that the file is read or written
   * sequentially without seeking.  An implementation may use this flag to
   * indicate whether it is valid to stream file contents using a named
   * pipe.  Default: `false`.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<Boolean> getStreamable() {
    return this.streamable;
  }

  private Object doc;

  /**
   * Getter for property <I>https://w3id.org/cwl/salad#Documented/doc</I><BR>
   * <BLOCKQUOTE>
   * A documentation string for this object, or an array of strings which should be concatenated.   * </BLOCKQUOTE>
   */

  public Object getDoc() {
    return this.doc;
  }

  private Object format;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#format</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: File` or is an array of `items: File`.
   * 
   * This is the file format that will be assigned to the output
   * File object.
   *    * </BLOCKQUOTE>
   */

  public Object getFormat() {
    return this.format;
  }

  private Object type;

  /**
   * Getter for property <I>https://w3id.org/cwl/salad#type</I><BR>
   * <BLOCKQUOTE>
   * Specify valid types of data that may be assigned to this parameter.
   *    * </BLOCKQUOTE>
   */

  public Object getType() {
    return this.type;
  }

  private java.util.Optional<CommandOutputBinding> outputBinding;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#CommandOutputParameter/outputBinding</I><BR>
   * <BLOCKQUOTE>
   * Describes how to generate this output object based on the files produced by a CommandLineTool   * </BLOCKQUOTE>
   */

  public java.util.Optional<CommandOutputBinding> getOutputBinding() {
    return this.outputBinding;
  }

  /**
   * Used by {@link org.commonwl.cwlsdk.cwl1_1.utils.RootLoader} to construct instances of CommandOutputParameterImpl.
   *
   * @param __doc_            Document fragment to load this record object from (presumably a
                              {@link java.util.Map}).
   * @param __baseUri_        Base URI to generate child document IDs against.
   * @param __loadingOptions  Context for loading URIs and populating objects.
   * @param __docRoot_        ID at this position in the document (if available) (maybe?)
   * @throws ValidationException If the document fragment is not a {@link java.util.Map}
   *                             or validation of fields fails.
   */
  public CommandOutputParameterImpl(
      final Object __doc_,
      final String __baseUri_,
      LoadingOptions __loadingOptions,
      final String __docRoot_) {
    super(__doc_, __baseUri_, __loadingOptions, __docRoot_);
    // Prefix plumbing variables with '__' to reduce likelihood of collision with
    // generated names.
    String __baseUri = __baseUri_;
    String __docRoot = __docRoot_;
    if (!(__doc_ instanceof java.util.Map)) {
      throw new ValidationException("CommandOutputParameterImpl called on non-map");
    }
    final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;
    final java.util.List<ValidationException> __errors =
        new java.util.ArrayList<ValidationException>();
    if (__loadingOptions != null) {
      this.loadingOptions_ = __loadingOptions;
    }
    java.util.Optional<String> id;

    if (__doc.containsKey("id")) {
      try {
        id =
            LoaderInstances
                .uri_optional_StringInstance_True_False_None_None
                .loadField(__doc.get("id"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        id = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `id` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      id = null;
    }

    Boolean __original_is_null = id == null;
    if (id == null) {
      if (__docRoot != null) {
        id = java.util.Optional.of(__docRoot);
      } else {
        id = java.util.Optional.of("_:" + java.util.UUID.randomUUID().toString());
      }
    }
    if (__original_is_null) {
        __baseUri = __baseUri_;
    } else {
        __baseUri = (String) id.orElse(null);
    }
    java.util.Optional<String> label;

    if (__doc.containsKey("label")) {
      try {
        label =
            LoaderInstances
                .optional_StringInstance
                .loadField(__doc.get("label"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        label = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `label` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      label = null;
    }
    Object secondaryFiles;

    if (__doc.containsKey("secondaryFiles")) {
      try {
        secondaryFiles =
            LoaderInstances
                .secondaryfilesdsl_union_of_NullInstance_or_SecondaryFileSchema_or_array_of_SecondaryFileSchema
                .loadField(__doc.get("secondaryFiles"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        secondaryFiles = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `secondaryFiles` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      secondaryFiles = null;
    }
    java.util.Optional<Boolean> streamable;

    if (__doc.containsKey("streamable")) {
      try {
        streamable =
            LoaderInstances
                .optional_BooleanInstance
                .loadField(__doc.get("streamable"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        streamable = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `streamable` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      streamable = null;
    }
    Object doc;

    if (__doc.containsKey("doc")) {
      try {
        doc =
            LoaderInstances
                .union_of_NullInstance_or_StringInstance_or_array_of_StringInstance
                .loadField(__doc.get("doc"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        doc = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `doc` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      doc = null;
    }
    Object format;

    if (__doc.containsKey("format")) {
      try {
        format =
            LoaderInstances
                .uri_union_of_NullInstance_or_StringInstance_or_ExpressionLoader_True_False_None_True
                .loadField(__doc.get("format"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        format = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `format` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      format = null;
    }
    Object type;
    try {
      type =
          LoaderInstances
              .typedsl_union_of_CWLType_or_stdout_or_stderr_or_CommandOutputRecordSchema_or_CommandOutputEnumSchema_or_CommandOutputArraySchema_or_StringInstance_or_array_of_union_of_CWLType_or_CommandOutputRecordSchema_or_CommandOutputEnumSchema_or_CommandOutputArraySchema_or_StringInstance_2
              .loadField(__doc.get("type"), __baseUri, __loadingOptions);
    } catch (ValidationException e) {
      type = null; // won't be used but prevents compiler from complaining.
      final String __message = "the `type` field is not valid because:";
      __errors.add(new ValidationException(__message, e));
    }
    java.util.Optional<CommandOutputBinding> outputBinding;

    if (__doc.containsKey("outputBinding")) {
      try {
        outputBinding =
            LoaderInstances
                .optional_CommandOutputBinding
                .loadField(__doc.get("outputBinding"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        outputBinding = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `outputBinding` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      outputBinding = null;
    }
    if (!__errors.isEmpty()) {
      throw new ValidationException("Trying 'RecordField'", __errors);
    }
    this.label = (java.util.Optional<String>) label;
    this.secondaryFiles = (Object) secondaryFiles;
    this.streamable = (java.util.Optional<Boolean>) streamable;
    this.doc = (Object) doc;
    this.id = (java.util.Optional<String>) id;
    this.format = (Object) format;
    this.type = (Object) type;
    this.outputBinding = (java.util.Optional<CommandOutputBinding>) outputBinding;
    for (String field:__doc.keySet()) {
      if (!attrs.contains(field)) {
        if (field.contains(":")) {
          String expanded_field = __loadingOptions.expandUrl(field, "", false, false, null);
          extensionFields_.put(expanded_field, __doc.get(field));
        }
      }
    }
  }
  private java.util.List<String> attrs = java.util.Arrays.asList("label", "secondaryFiles", "streamable", "doc", "id", "format", "type", "outputBinding");
}

1	// Copyright Common Workflow Language project contributors
2	//
3	// Licensed under the Apache License, Version 2.0 (the "License");
4	// you may not use this file except in compliance with the License.
5	// You may obtain a copy of the License at
6	//
7	// http://www.apache.org/licenses/LICENSE-2.0
8	//
9	// Unless required by applicable law or agreed to in writing, software
10	// distributed under the License is distributed on an "AS IS" BASIS,
11	// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12	// See the License for the specific language governing permissions and
13	// limitations under the License.
14
15	package org.commonwl.cwlsdk.cwl1_1;
16
17	import org.commonwl.cwlsdk.cwl1_1.utils.LoaderInstances;
18	import org.commonwl.cwlsdk.cwl1_1.utils.LoadingOptions;
19	import org.commonwl.cwlsdk.cwl1_1.utils.LoadingOptionsBuilder;
20	import org.commonwl.cwlsdk.cwl1_1.utils.SaveableImpl;
21	import org.commonwl.cwlsdk.cwl1_1.utils.ValidationException;
22
23	/**
24	* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#CommandOutputParameter</I><BR> <BLOCKQUOTE>
25	An output parameter for a CommandLineTool. </BLOCKQUOTE>
26	*/
27	public class CommandOutputParameterImpl extends SaveableImpl implements CommandOutputParameter {
28	private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();	1✔
29	private java.util.Map<String, Object> extensionFields_ =	1✔
30	new java.util.HashMap<String, Object>();
31	public LoadingOptions getLoadingOptions() {
NEW 32	return this.loadingOptions_;	×
33	}
34	public java.util.Map<String, Object> getExtensionFields() {
NEW 35	return this.extensionFields_;	×
36	}
37
38	private java.util.Optional<String> id;
39
40	/**
41	* Getter for property <I>https://w3id.org/cwl/cwl#Identified/id</I><BR>
42	* <BLOCKQUOTE>
43	* The unique identifier for this object. * </BLOCKQUOTE>
44	*/
45
46	public java.util.Optional<String> getId() {
NEW 47	return this.id;	×
48	}
49
50	private java.util.Optional<String> label;
51
52	/**
53	* Getter for property <I>https://w3id.org/cwl/cwl#Labeled/label</I><BR>
54	* <BLOCKQUOTE>
55	* A short, human-readable label of this object. * </BLOCKQUOTE>
56	*/
57
58	public java.util.Optional<String> getLabel() {
NEW 59	return this.label;	×
60	}
61
62	private Object secondaryFiles;
63
64	/**
65	* Getter for property <I>https://w3id.org/cwl/cwl#secondaryFiles</I><BR>
66	* <BLOCKQUOTE>
67	* Only valid when `type: File` or is an array of `items: File`.
68	*
69	* Provides a pattern or expression specifying files or
70	* directories that should be included alongside the primary
71	* file. Secondary files may be required or optional. When not
72	* explicitly specified, secondary files specified for `inputs`
73	* are required and `outputs` are optional. An implementation
74	* must include matching Files and Directories in the
75	* `secondaryFiles` property of the primary file. These Files
76	* and Directories must be transferred and staged alongside the
77	* primary file. An implementation may fail workflow execution
78	* if a required secondary file does not exist.
79	*
80	* If the value is an expression, the value of `self` in the expression
81	* must be the primary input or output File object to which this binding
82	* applies. The `basename`, `nameroot` and `nameext` fields must be
83	* present in `self`. For `CommandLineTool` outputs the `path` field must
84	* also be present. The expression must return a filename string relative
85	* to the path to the primary File, a File or Directory object with either
86	* `path` or `location` and `basename` fields set, or an array consisting
87	* of strings or File or Directory objects. It is legal to reference an
88	* unchanged File or Directory object taken from input as a secondaryFile.
89	* The expression may return "null" in which case there is no secondaryFile
90	* from that expression.
91	*
92	* To work on non-filename-preserving storage systems, portable tool
93	* descriptions should avoid constructing new values from `location`, but
94	* should construct relative references using `basename` or `nameroot`
95	* instead.
96	*
97	* If a value in `secondaryFiles` is a string that is not an expression,
98	* it specifies that the following pattern should be applied to the path
99	* of the primary file to yield a filename relative to the primary File:
100	*
101	* 1. If string ends with `?` character, remove the last `?` and mark
102	* the resulting secondary file as optional.
103	* 2. If string begins with one or more caret `^` characters, for each
104	* caret, remove the last file extension from the path (the last
105	* period `.` and all following characters). If there are no file
106	* extensions, the path is unchanged.
107	* 3. Append the remainder of the string to the end of the file path.
108	* * </BLOCKQUOTE>
109	*/
110
111	public Object getSecondaryFiles() {
NEW 112	return this.secondaryFiles;	×
113	}
114
115	private java.util.Optional<Boolean> streamable;
116
117	/**
118	* Getter for property <I>https://w3id.org/cwl/cwl#FieldBase/streamable</I><BR>
119	* <BLOCKQUOTE>
120	* Only valid when `type: File` or is an array of `items: File`.
121	*
122	* A value of `true` indicates that the file is read or written
123	* sequentially without seeking. An implementation may use this flag to
124	* indicate whether it is valid to stream file contents using a named
125	* pipe. Default: `false`.
126	* * </BLOCKQUOTE>
127	*/
128
129	public java.util.Optional<Boolean> getStreamable() {
NEW 130	return this.streamable;	×
131	}
132
133	private Object doc;
134
135	/**
136	* Getter for property <I>https://w3id.org/cwl/salad#Documented/doc</I><BR>
137	* <BLOCKQUOTE>
138	* A documentation string for this object, or an array of strings which should be concatenated. * </BLOCKQUOTE>
139	*/
140
141	public Object getDoc() {
NEW 142	return this.doc;	×
143	}
144
145	private Object format;
146
147	/**
148	* Getter for property <I>https://w3id.org/cwl/cwl#format</I><BR>
149	* <BLOCKQUOTE>
150	* Only valid when `type: File` or is an array of `items: File`.
151	*
152	* This is the file format that will be assigned to the output
153	* File object.
154	* * </BLOCKQUOTE>
155	*/
156
157	public Object getFormat() {
NEW 158	return this.format;	×
159	}
160
161	private Object type;
162
163	/**
164	* Getter for property <I>https://w3id.org/cwl/salad#type</I><BR>
165	* <BLOCKQUOTE>
166	* Specify valid types of data that may be assigned to this parameter.
167	* * </BLOCKQUOTE>
168	*/
169
170	public Object getType() {
NEW 171	return this.type;	×
172	}
173
174	private java.util.Optional<CommandOutputBinding> outputBinding;
175
176	/**
177	* Getter for property <I>https://w3id.org/cwl/cwl#CommandOutputParameter/outputBinding</I><BR>
178	* <BLOCKQUOTE>
179	* Describes how to generate this output object based on the files produced by a CommandLineTool * </BLOCKQUOTE>
180	*/
181
182	public java.util.Optional<CommandOutputBinding> getOutputBinding() {
NEW 183	return this.outputBinding;	×
184	}
185
186	/**
187	* Used by {@link org.commonwl.cwlsdk.cwl1_1.utils.RootLoader} to construct instances of CommandOutputParameterImpl.
188	*
189	* @param __doc_ Document fragment to load this record object from (presumably a
190	{@link java.util.Map}).
191	* @param __baseUri_ Base URI to generate child document IDs against.
192	* @param __loadingOptions Context for loading URIs and populating objects.
193	* @param __docRoot_ ID at this position in the document (if available) (maybe?)
194	* @throws ValidationException If the document fragment is not a {@link java.util.Map}
195	* or validation of fields fails.
196	*/
197	public CommandOutputParameterImpl(
198	final Object __doc_,
199	final String __baseUri_,
200	LoadingOptions __loadingOptions,
201	final String __docRoot_) {
202	super(__doc_, __baseUri_, __loadingOptions, __docRoot_);	1✔
203	// Prefix plumbing variables with '__' to reduce likelihood of collision with
204	// generated names.
205	String __baseUri = __baseUri_;	1✔
206	String __docRoot = __docRoot_;	1✔
207	if (!(__doc_ instanceof java.util.Map)) {	1✔
NEW 208	throw new ValidationException("CommandOutputParameterImpl called on non-map");	×
209	}
210	final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;	1✔
211	final java.util.List<ValidationException> __errors =	1✔
212	new java.util.ArrayList<ValidationException>();
213	if (__loadingOptions != null) {	1✔
214	this.loadingOptions_ = __loadingOptions;	1✔
215	}
216	java.util.Optional<String> id;
217
218	if (__doc.containsKey("id")) {	1✔
219	try {
220	id =	1✔
221	LoaderInstances
222	.uri_optional_StringInstance_True_False_None_None
223	.loadField(__doc.get("id"), __baseUri, __loadingOptions);	1✔
NEW 224	} catch (ValidationException e) {	×
NEW 225	id = null; // won't be used but prevents compiler from complaining.	×
NEW 226	final String __message = "the `id` field is not valid because:";	×
NEW 227	__errors.add(new ValidationException(__message, e));	×
228	}	1✔
229
230	} else {
NEW 231	id = null;	×
232	}
233
234	Boolean __original_is_null = id == null;	1✔
235	if (id == null) {	1✔
NEW 236	if (__docRoot != null) {	×
NEW 237	id = java.util.Optional.of(__docRoot);	×
238	} else {
NEW 239	id = java.util.Optional.of("_:" + java.util.UUID.randomUUID().toString());	×
240	}
241	}
242	if (__original_is_null) {	1✔
NEW 243	__baseUri = __baseUri_;	×
244	} else {
245	__baseUri = (String) id.orElse(null);	1✔
246	}
247	java.util.Optional<String> label;
248
249	if (__doc.containsKey("label")) {	1✔
250	try {
NEW 251	label =	×
252	LoaderInstances
253	.optional_StringInstance
NEW 254	.loadField(__doc.get("label"), __baseUri, __loadingOptions);	×
NEW 255	} catch (ValidationException e) {	×
NEW 256	label = null; // won't be used but prevents compiler from complaining.	×
NEW 257	final String __message = "the `label` field is not valid because:";	×
NEW 258	__errors.add(new ValidationException(__message, e));	×
NEW 259	}	×
260
261	} else {
262	label = null;	1✔
263	}
264	Object secondaryFiles;
265
266	if (__doc.containsKey("secondaryFiles")) {	1✔
267	try {
268	secondaryFiles =	1✔
269	LoaderInstances
270	.secondaryfilesdsl_union_of_NullInstance_or_SecondaryFileSchema_or_array_of_SecondaryFileSchema
271	.loadField(__doc.get("secondaryFiles"), __baseUri, __loadingOptions);	1✔
NEW 272	} catch (ValidationException e) {	×
NEW 273	secondaryFiles = null; // won't be used but prevents compiler from complaining.	×
NEW 274	final String __message = "the `secondaryFiles` field is not valid because:";	×
NEW 275	__errors.add(new ValidationException(__message, e));	×
276	}	1✔
277
278	} else {
279	secondaryFiles = null;	1✔
280	}
281	java.util.Optional<Boolean> streamable;
282
283	if (__doc.containsKey("streamable")) {	1✔
284	try {
NEW 285	streamable =	×
286	LoaderInstances
287	.optional_BooleanInstance
NEW 288	.loadField(__doc.get("streamable"), __baseUri, __loadingOptions);	×
NEW 289	} catch (ValidationException e) {	×
NEW 290	streamable = null; // won't be used but prevents compiler from complaining.	×
NEW 291	final String __message = "the `streamable` field is not valid because:";	×
NEW 292	__errors.add(new ValidationException(__message, e));	×
NEW 293	}	×
294
295	} else {
296	streamable = null;	1✔
297	}
298	Object doc;
299
300	if (__doc.containsKey("doc")) {	1✔
301	try {
302	doc =	1✔
303	LoaderInstances
304	.union_of_NullInstance_or_StringInstance_or_array_of_StringInstance
305	.loadField(__doc.get("doc"), __baseUri, __loadingOptions);	1✔
NEW 306	} catch (ValidationException e) {	×
NEW 307	doc = null; // won't be used but prevents compiler from complaining.	×
NEW 308	final String __message = "the `doc` field is not valid because:";	×
NEW 309	__errors.add(new ValidationException(__message, e));	×
310	}	1✔
311
312	} else {
313	doc = null;	1✔
314	}
315	Object format;
316
317	if (__doc.containsKey("format")) {	1✔
318	try {
319	format =	1✔
320	LoaderInstances
321	.uri_union_of_NullInstance_or_StringInstance_or_ExpressionLoader_True_False_None_True
322	.loadField(__doc.get("format"), __baseUri, __loadingOptions);	1✔
NEW 323	} catch (ValidationException e) {	×
NEW 324	format = null; // won't be used but prevents compiler from complaining.	×
NEW 325	final String __message = "the `format` field is not valid because:";	×
NEW 326	__errors.add(new ValidationException(__message, e));	×
327	}	1✔
328
329	} else {
330	format = null;	1✔
331	}
332	Object type;
333	try {
334	type =	1✔
335	LoaderInstances
336	.typedsl_union_of_CWLType_or_stdout_or_stderr_or_CommandOutputRecordSchema_or_CommandOutputEnumSchema_or_CommandOutputArraySchema_or_StringInstance_or_array_of_union_of_CWLType_or_CommandOutputRecordSchema_or_CommandOutputEnumSchema_or_CommandOutputArraySchema_or_StringInstance_2
337	.loadField(__doc.get("type"), __baseUri, __loadingOptions);	1✔
NEW 338	} catch (ValidationException e) {	×
NEW 339	type = null; // won't be used but prevents compiler from complaining.	×
NEW 340	final String __message = "the `type` field is not valid because:";	×
NEW 341	__errors.add(new ValidationException(__message, e));	×
342	}	1✔
343	java.util.Optional<CommandOutputBinding> outputBinding;
344
345	if (__doc.containsKey("outputBinding")) {	1✔
346	try {
347	outputBinding =	1✔
348	LoaderInstances
349	.optional_CommandOutputBinding
350	.loadField(__doc.get("outputBinding"), __baseUri, __loadingOptions);	1✔
NEW 351	} catch (ValidationException e) {	×
NEW 352	outputBinding = null; // won't be used but prevents compiler from complaining.	×
NEW 353	final String __message = "the `outputBinding` field is not valid because:";	×
NEW 354	__errors.add(new ValidationException(__message, e));	×
355	}	1✔
356
357	} else {
358	outputBinding = null;	1✔
359	}
360	if (!__errors.isEmpty()) {	1✔
NEW 361	throw new ValidationException("Trying 'RecordField'", __errors);	×
362	}
363	this.label = (java.util.Optional<String>) label;	1✔
364	this.secondaryFiles = (Object) secondaryFiles;	1✔
365	this.streamable = (java.util.Optional<Boolean>) streamable;	1✔
366	this.doc = (Object) doc;	1✔
367	this.id = (java.util.Optional<String>) id;	1✔
368	this.format = (Object) format;	1✔
369	this.type = (Object) type;	1✔
370	this.outputBinding = (java.util.Optional<CommandOutputBinding>) outputBinding;	1✔
371	for (String field:__doc.keySet()) {	1✔
372	if (!attrs.contains(field)) {	1✔
373	if (field.contains(":")) {	1✔
NEW 374	String expanded_field = __loadingOptions.expandUrl(field, "", false, false, null);	×
NEW 375	extensionFields_.put(expanded_field, __doc.get(field));	×
376	}
377	}
378	}	1✔
379	}	1✔
380	private java.util.List<String> attrs = java.util.Arrays.asList("label", "secondaryFiles", "streamable", "doc", "id", "format", "type", "outputBinding");	1✔
381	}

common-workflow-language / cwljava / #394

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