#389

Committed 30 Oct 2025 05:13PM UTC coverage: 58.693% (-0.8%) from 59.538%

Build # #389

Build Type

Pull #218

github

Committed by

web-flow

Commit Message

Merge 98b159202 into befd7e4b9

Pull Request Pull Request #218: Populate the extensionFields; add public accessors for LoadingOptions

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230 of 569 new or added lines in 67 files covered. (40.42%)

28 existing lines in 27 files now uncovered.

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46.67

/src/main/java/org/w3id/cwl/cwl1_2/OperationImpl.java

// Copyright Common Workflow Language project contributors
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
//      http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.

package org.w3id.cwl.cwl1_2;

import org.w3id.cwl.cwl1_2.utils.LoaderInstances;
import org.w3id.cwl.cwl1_2.utils.LoadingOptions;
import org.w3id.cwl.cwl1_2.utils.LoadingOptionsBuilder;
import org.w3id.cwl.cwl1_2.utils.SaveableImpl;
import org.w3id.cwl.cwl1_2.utils.ValidationException;

/**
* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#Operation</I><BR> <BLOCKQUOTE>
 This record describes an abstract operation.  It is a potential
 step of a workflow that has not yet been bound to a concrete
 implementation.  It specifies an input and output signature, but
 does not provide enough information to be executed.  An
 implementation (or other tooling) may provide a means of binding
 an Operation to a concrete process (such as Workflow,
 CommandLineTool, or ExpressionTool) with a compatible signature.
  </BLOCKQUOTE>
 */
public class OperationImpl extends SaveableImpl implements Operation {
  private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();
  private java.util.Map<String, Object> extensionFields_ =
      new java.util.HashMap<String, Object>();
  public LoadingOptions getLoadingOptions() {
    return this.loadingOptions_;
  }
  public java.util.Map<String, Object> getExtensionFields() {
    return this.extensionFields_;
  }

  private java.util.Optional<String> id;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#Process/id</I><BR>
   * <BLOCKQUOTE>
   * The unique identifier for this object.
   * 
   * Only useful for `$graph` at `Process` level. Should not be exposed
   * to users in graphical or terminal user interfaces.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<String> getId() {
    return this.id;
  }

  private Operation_class class_;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#Operation/class</I><BR>

   */

  public Operation_class getClass_() {
    return this.class_;
  }

  private java.util.Optional<String> label;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#Labeled/label</I><BR>
   * <BLOCKQUOTE>
   * A short, human-readable label of this object.   * </BLOCKQUOTE>
   */

  public java.util.Optional<String> getLabel() {
    return this.label;
  }

  private Object doc;

  /**
   * Getter for property <I>https://w3id.org/cwl/salad#Documented/doc</I><BR>
   * <BLOCKQUOTE>
   * A documentation string for this object, or an array of strings which should be concatenated.   * </BLOCKQUOTE>
   */

  public Object getDoc() {
    return this.doc;
  }

  private java.util.List<Object> inputs;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#inputs</I><BR>
   * <BLOCKQUOTE>
   * Defines the input parameters of the process.  The process is ready to
   * run when all required input parameters are associated with concrete
   * values.  Input parameters include a schema for each parameter which is
   * used to validate the input object.  It may also be used to build a user
   * interface for constructing the input object.
   * 
   * When accepting an input object, all input parameters must have a value.
   * If an input parameter is missing from the input object, it must be
   * assigned a value of `null` (or the value of `default` for that
   * parameter, if provided) for the purposes of validation and evaluation
   * of expressions.
   *    * </BLOCKQUOTE>
   */

  public java.util.List<Object> getInputs() {
    return this.inputs;
  }

  private java.util.List<Object> outputs;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#outputs</I><BR>
   * <BLOCKQUOTE>
   * Defines the parameters representing the output of the process.  May be
   * used to generate and/or validate the output object.
   *    * </BLOCKQUOTE>
   */

  public java.util.List<Object> getOutputs() {
    return this.outputs;
  }

  private java.util.Optional<java.util.List<Object>> requirements;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#requirements</I><BR>
   * <BLOCKQUOTE>
   * Declares requirements that apply to either the runtime environment or the
   * workflow engine that must be met in order to execute this process.  If
   * an implementation cannot satisfy all requirements, or a requirement is
   * listed which is not recognized by the implementation, it is a fatal
   * error and the implementation must not attempt to run the process,
   * unless overridden at user option.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<java.util.List<Object>> getRequirements() {
    return this.requirements;
  }

  private java.util.Optional<java.util.List<Object>> hints;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#hints</I><BR>
   * <BLOCKQUOTE>
   * Declares hints applying to either the runtime environment or the
   * workflow engine that may be helpful in executing this process.  It is
   * not an error if an implementation cannot satisfy all hints, however
   * the implementation may report a warning.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<java.util.List<Object>> getHints() {
    return this.hints;
  }

  private java.util.Optional<CWLVersion> cwlVersion;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#cwlVersion</I><BR>
   * <BLOCKQUOTE>
   * CWL document version. Always required at the document root. Not
   * required for a Process embedded inside another Process.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<CWLVersion> getCwlVersion() {
    return this.cwlVersion;
  }

  private java.util.Optional<java.util.List<String>> intent;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#Process/intent</I><BR>
   * <BLOCKQUOTE>
   * An identifier for the type of computational operation, of this Process.
   * Especially useful for [`Operation`](Workflow.html#Operation), but can also be used for
   * [`CommandLineTool`](CommandLineTool.html#CommandLineTool),
   * [`Workflow`](Workflow.html#Workflow), or [ExpressionTool](Workflow.html#ExpressionTool).
   * 
   * If provided, then this must be an IRI of a concept node that
   * represents the type of operation, preferably defined within an ontology.
   * 
   * For example, in the domain of bioinformatics, one can use an IRI from
   * the EDAM Ontology's [Operation concept nodes](http://edamontology.org/operation_0004),
   * like [Alignment](http://edamontology.org/operation_2928),
   * or [Clustering](http://edamontology.org/operation_3432); or a more
   * specific Operation concept like
   * [Split read mapping](http://edamontology.org/operation_3199).
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<java.util.List<String>> getIntent() {
    return this.intent;
  }

  /**
   * Used by {@link org.w3id.cwl.cwl1_2.utils.RootLoader} to construct instances of OperationImpl.
   *
   * @param __doc_            Document fragment to load this record object from (presumably a
                              {@link java.util.Map}).
   * @param __baseUri_        Base URI to generate child document IDs against.
   * @param __loadingOptions  Context for loading URIs and populating objects.
   * @param __docRoot_        ID at this position in the document (if available) (maybe?)
   * @throws ValidationException If the document fragment is not a {@link java.util.Map}
   *                             or validation of fields fails.
   */
  public OperationImpl(
      final Object __doc_,
      final String __baseUri_,
      LoadingOptions __loadingOptions,
      final String __docRoot_) {
    super(__doc_, __baseUri_, __loadingOptions, __docRoot_);
    // Prefix plumbing variables with '__' to reduce likelihood of collision with
    // generated names.
    String __baseUri = __baseUri_;
    String __docRoot = __docRoot_;
    if (!(__doc_ instanceof java.util.Map)) {
      throw new ValidationException("OperationImpl called on non-map");
    }
    final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;
    final java.util.List<ValidationException> __errors =
        new java.util.ArrayList<ValidationException>();
    if (__loadingOptions != null) {
      this.loadingOptions_ = __loadingOptions;
    }
    java.util.Optional<String> id;

    if (__doc.containsKey("id")) {
      try {
        id =
            LoaderInstances
                .uri_optional_StringInstance_True_False_None_None
                .loadField(__doc.get("id"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        id = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `id` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      id = null;
    }

    Boolean __original_is_null = id == null;
    if (id == null) {
      if (__docRoot != null) {
        id = java.util.Optional.of(__docRoot);
      } else {
        id = java.util.Optional.of("_:" + java.util.UUID.randomUUID().toString());
      }
    }
    if (__original_is_null) {
        __baseUri = __baseUri_;
    } else {
        __baseUri = (String) id.orElse(null);
    }
    Operation_class class_;
    try {
      class_ =
          LoaderInstances
              .uri_Operation_class_False_True_None_None
              .loadField(__doc.get("class"), __baseUri, __loadingOptions);
    } catch (ValidationException e) {
      class_ = null; // won't be used but prevents compiler from complaining.
      final String __message = "the `class` field is not valid because:";
      __errors.add(new ValidationException(__message, e));
    }
    java.util.Optional<String> label;

    if (__doc.containsKey("label")) {
      try {
        label =
            LoaderInstances
                .optional_StringInstance
                .loadField(__doc.get("label"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        label = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `label` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      label = null;
    }
    Object doc;

    if (__doc.containsKey("doc")) {
      try {
        doc =
            LoaderInstances
                .union_of_NullInstance_or_StringInstance_or_array_of_StringInstance
                .loadField(__doc.get("doc"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        doc = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `doc` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      doc = null;
    }
    java.util.List<Object> inputs;
    try {
      inputs =
          LoaderInstances
              .idmap_inputs_array_of_OperationInputParameter
              .loadField(__doc.get("inputs"), __baseUri, __loadingOptions);
    } catch (ValidationException e) {
      inputs = null; // won't be used but prevents compiler from complaining.
      final String __message = "the `inputs` field is not valid because:";
      __errors.add(new ValidationException(__message, e));
    }
    java.util.List<Object> outputs;
    try {
      outputs =
          LoaderInstances
              .idmap_outputs_array_of_OperationOutputParameter
              .loadField(__doc.get("outputs"), __baseUri, __loadingOptions);
    } catch (ValidationException e) {
      outputs = null; // won't be used but prevents compiler from complaining.
      final String __message = "the `outputs` field is not valid because:";
      __errors.add(new ValidationException(__message, e));
    }
    java.util.Optional<java.util.List<Object>> requirements;

    if (__doc.containsKey("requirements")) {
      try {
        requirements =
            LoaderInstances
                .idmap_requirements_optional_array_of_union_of_InlineJavascriptRequirement_or_SchemaDefRequirement_or_LoadListingRequirement_or_DockerRequirement_or_SoftwareRequirement_or_InitialWorkDirRequirement_or_EnvVarRequirement_or_ShellCommandRequirement_or_ResourceRequirement_or_WorkReuse_or_NetworkAccess_or_InplaceUpdateRequirement_or_ToolTimeLimit_or_SubworkflowFeatureRequirement_or_ScatterFeatureRequirement_or_MultipleInputFeatureRequirement_or_StepInputExpressionRequirement
                .loadField(__doc.get("requirements"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        requirements = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `requirements` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      requirements = null;
    }
    java.util.Optional<java.util.List<Object>> hints;

    if (__doc.containsKey("hints")) {
      try {
        hints =
            LoaderInstances
                .idmap_hints_optional_array_of_union_of_InlineJavascriptRequirement_or_SchemaDefRequirement_or_LoadListingRequirement_or_DockerRequirement_or_SoftwareRequirement_or_InitialWorkDirRequirement_or_EnvVarRequirement_or_ShellCommandRequirement_or_ResourceRequirement_or_WorkReuse_or_NetworkAccess_or_InplaceUpdateRequirement_or_ToolTimeLimit_or_SubworkflowFeatureRequirement_or_ScatterFeatureRequirement_or_MultipleInputFeatureRequirement_or_StepInputExpressionRequirement_or_AnyInstance
                .loadField(__doc.get("hints"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        hints = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `hints` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      hints = null;
    }
    java.util.Optional<CWLVersion> cwlVersion;

    if (__doc.containsKey("cwlVersion")) {
      try {
        cwlVersion =
            LoaderInstances
                .uri_optional_CWLVersion_False_True_None_None
                .loadField(__doc.get("cwlVersion"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        cwlVersion = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `cwlVersion` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      cwlVersion = null;
    }
    java.util.Optional<java.util.List<String>> intent;

    if (__doc.containsKey("intent")) {
      try {
        intent =
            LoaderInstances
                .uri_optional_array_of_StringInstance_True_False_None_None
                .loadField(__doc.get("intent"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        intent = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `intent` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      intent = null;
    }
    if (!__errors.isEmpty()) {
      throw new ValidationException("Trying 'RecordField'", __errors);
    }
    this.id = (java.util.Optional<String>) id;
    this.label = (java.util.Optional<String>) label;
    this.doc = (Object) doc;
    this.inputs = (java.util.List<Object>) inputs;
    this.outputs = (java.util.List<Object>) outputs;
    this.requirements = (java.util.Optional<java.util.List<Object>>) requirements;
    this.hints = (java.util.Optional<java.util.List<Object>>) hints;
    this.cwlVersion = (java.util.Optional<CWLVersion>) cwlVersion;
    this.intent = (java.util.Optional<java.util.List<String>>) intent;
    this.class_ = (Operation_class) class_;
    for (String field:__doc.keySet()) {
      if (!attrs.contains(field)) {
        if (field.contains(":")) {
          String expanded_field = __loadingOptions.expandUrl(field, "", false, false, null);
          extensionFields_.put(expanded_field, __doc.get(field));
        }
      }
    }
  }
  private java.util.List<String> attrs = java.util.Arrays.asList("id", "label", "doc", "inputs", "outputs", "requirements", "hints", "cwlVersion", "intent", "class");
}

1	// Copyright Common Workflow Language project contributors
2	//
3	// Licensed under the Apache License, Version 2.0 (the "License");
4	// you may not use this file except in compliance with the License.
5	// You may obtain a copy of the License at
6	//
7	// http://www.apache.org/licenses/LICENSE-2.0
8	//
9	// Unless required by applicable law or agreed to in writing, software
10	// distributed under the License is distributed on an "AS IS" BASIS,
11	// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12	// See the License for the specific language governing permissions and
13	// limitations under the License.
14
15	package org.w3id.cwl.cwl1_2;
16
17	import org.w3id.cwl.cwl1_2.utils.LoaderInstances;
18	import org.w3id.cwl.cwl1_2.utils.LoadingOptions;
19	import org.w3id.cwl.cwl1_2.utils.LoadingOptionsBuilder;
20	import org.w3id.cwl.cwl1_2.utils.SaveableImpl;
21	import org.w3id.cwl.cwl1_2.utils.ValidationException;
22
23	/**
24	* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#Operation</I><BR> <BLOCKQUOTE>
25	This record describes an abstract operation. It is a potential
26	step of a workflow that has not yet been bound to a concrete
27	implementation. It specifies an input and output signature, but
28	does not provide enough information to be executed. An
29	implementation (or other tooling) may provide a means of binding
30	an Operation to a concrete process (such as Workflow,
31	CommandLineTool, or ExpressionTool) with a compatible signature.
32	</BLOCKQUOTE>
33	*/
34	public class OperationImpl extends SaveableImpl implements Operation {
35	private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();	1✔
36	private java.util.Map<String, Object> extensionFields_ =	1✔
37	new java.util.HashMap<String, Object>();
38	public LoadingOptions getLoadingOptions() {
NEW 39	return this.loadingOptions_;	×
40	}
41	public java.util.Map<String, Object> getExtensionFields() {
42	return this.extensionFields_;	×
43	}
44
45	private java.util.Optional<String> id;
46
47	/**
48	* Getter for property <I>https://w3id.org/cwl/cwl#Process/id</I><BR>
49	* <BLOCKQUOTE>
50	* The unique identifier for this object.
51	*
52	* Only useful for `$graph` at `Process` level. Should not be exposed
53	* to users in graphical or terminal user interfaces.
54	* * </BLOCKQUOTE>
55	*/
56
57	public java.util.Optional<String> getId() {
58	return this.id;	×
59	}
60
61	private Operation_class class_;
62
63	/**
64	* Getter for property <I>https://w3id.org/cwl/cwl#Operation/class</I><BR>
65
66	*/
67
68	public Operation_class getClass_() {
69	return this.class_;	×
70	}
71
72	private java.util.Optional<String> label;
73
74	/**
75	* Getter for property <I>https://w3id.org/cwl/cwl#Labeled/label</I><BR>
76	* <BLOCKQUOTE>
77	* A short, human-readable label of this object. * </BLOCKQUOTE>
78	*/
79
80	public java.util.Optional<String> getLabel() {
81	return this.label;	×
82	}
83
84	private Object doc;
85
86	/**
87	* Getter for property <I>https://w3id.org/cwl/salad#Documented/doc</I><BR>
88	* <BLOCKQUOTE>
89	* A documentation string for this object, or an array of strings which should be concatenated. * </BLOCKQUOTE>
90	*/
91
92	public Object getDoc() {
93	return this.doc;	×
94	}
95
96	private java.util.List<Object> inputs;
97
98	/**
99	* Getter for property <I>https://w3id.org/cwl/cwl#inputs</I><BR>
100	* <BLOCKQUOTE>
101	* Defines the input parameters of the process. The process is ready to
102	* run when all required input parameters are associated with concrete
103	* values. Input parameters include a schema for each parameter which is
104	* used to validate the input object. It may also be used to build a user
105	* interface for constructing the input object.
106	*
107	* When accepting an input object, all input parameters must have a value.
108	* If an input parameter is missing from the input object, it must be
109	* assigned a value of `null` (or the value of `default` for that
110	* parameter, if provided) for the purposes of validation and evaluation
111	* of expressions.
112	* * </BLOCKQUOTE>
113	*/
114
115	public java.util.List<Object> getInputs() {
116	return this.inputs;	×
117	}
118
119	private java.util.List<Object> outputs;
120
121	/**
122	* Getter for property <I>https://w3id.org/cwl/cwl#outputs</I><BR>
123	* <BLOCKQUOTE>
124	* Defines the parameters representing the output of the process. May be
125	* used to generate and/or validate the output object.
126	* * </BLOCKQUOTE>
127	*/
128
129	public java.util.List<Object> getOutputs() {
130	return this.outputs;	×
131	}
132
133	private java.util.Optional<java.util.List<Object>> requirements;
134
135	/**
136	* Getter for property <I>https://w3id.org/cwl/cwl#requirements</I><BR>
137	* <BLOCKQUOTE>
138	* Declares requirements that apply to either the runtime environment or the
139	* workflow engine that must be met in order to execute this process. If
140	* an implementation cannot satisfy all requirements, or a requirement is
141	* listed which is not recognized by the implementation, it is a fatal
142	* error and the implementation must not attempt to run the process,
143	* unless overridden at user option.
144	* * </BLOCKQUOTE>
145	*/
146
147	public java.util.Optional<java.util.List<Object>> getRequirements() {
148	return this.requirements;	×
149	}
150
151	private java.util.Optional<java.util.List<Object>> hints;
152
153	/**
154	* Getter for property <I>https://w3id.org/cwl/cwl#hints</I><BR>
155	* <BLOCKQUOTE>
156	* Declares hints applying to either the runtime environment or the
157	* workflow engine that may be helpful in executing this process. It is
158	* not an error if an implementation cannot satisfy all hints, however
159	* the implementation may report a warning.
160	* * </BLOCKQUOTE>
161	*/
162
163	public java.util.Optional<java.util.List<Object>> getHints() {
164	return this.hints;	×
165	}
166
167	private java.util.Optional<CWLVersion> cwlVersion;
168
169	/**
170	* Getter for property <I>https://w3id.org/cwl/cwl#cwlVersion</I><BR>
171	* <BLOCKQUOTE>
172	* CWL document version. Always required at the document root. Not
173	* required for a Process embedded inside another Process.
174	* * </BLOCKQUOTE>
175	*/
176
177	public java.util.Optional<CWLVersion> getCwlVersion() {
178	return this.cwlVersion;	×
179	}
180
181	private java.util.Optional<java.util.List<String>> intent;
182
183	/**
184	* Getter for property <I>https://w3id.org/cwl/cwl#Process/intent</I><BR>
185	* <BLOCKQUOTE>
186	* An identifier for the type of computational operation, of this Process.
187	* Especially useful for [`Operation`](Workflow.html#Operation), but can also be used for
188	* [`CommandLineTool`](CommandLineTool.html#CommandLineTool),
189	* [`Workflow`](Workflow.html#Workflow), or [ExpressionTool](Workflow.html#ExpressionTool).
190	*
191	* If provided, then this must be an IRI of a concept node that
192	* represents the type of operation, preferably defined within an ontology.
193	*
194	* For example, in the domain of bioinformatics, one can use an IRI from
195	* the EDAM Ontology's [Operation concept nodes](http://edamontology.org/operation_0004),
196	* like [Alignment](http://edamontology.org/operation_2928),
197	* or [Clustering](http://edamontology.org/operation_3432); or a more
198	* specific Operation concept like
199	* [Split read mapping](http://edamontology.org/operation_3199).
200	* * </BLOCKQUOTE>
201	*/
202
203	public java.util.Optional<java.util.List<String>> getIntent() {
204	return this.intent;	×
205	}
206
207	/**
208	* Used by {@link org.w3id.cwl.cwl1_2.utils.RootLoader} to construct instances of OperationImpl.
209	*
210	* @param __doc_ Document fragment to load this record object from (presumably a
211	{@link java.util.Map}).
212	* @param __baseUri_ Base URI to generate child document IDs against.
213	* @param __loadingOptions Context for loading URIs and populating objects.
214	* @param __docRoot_ ID at this position in the document (if available) (maybe?)
215	* @throws ValidationException If the document fragment is not a {@link java.util.Map}
216	* or validation of fields fails.
217	*/
218	public OperationImpl(
219	final Object __doc_,
220	final String __baseUri_,
221	LoadingOptions __loadingOptions,
222	final String __docRoot_) {
223	super(__doc_, __baseUri_, __loadingOptions, __docRoot_);	1✔
224	// Prefix plumbing variables with '__' to reduce likelihood of collision with
225	// generated names.
226	String __baseUri = __baseUri_;	1✔
227	String __docRoot = __docRoot_;	1✔
228	if (!(__doc_ instanceof java.util.Map)) {	1✔
229	throw new ValidationException("OperationImpl called on non-map");	×
230	}
231	final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;	1✔
232	final java.util.List<ValidationException> __errors =	1✔
233	new java.util.ArrayList<ValidationException>();
234	if (__loadingOptions != null) {	1✔
235	this.loadingOptions_ = __loadingOptions;	1✔
236	}
237	java.util.Optional<String> id;
238
239	if (__doc.containsKey("id")) {	1✔
240	try {
241	id =	1✔
242	LoaderInstances
243	.uri_optional_StringInstance_True_False_None_None
244	.loadField(__doc.get("id"), __baseUri, __loadingOptions);	1✔
245	} catch (ValidationException e) {	×
246	id = null; // won't be used but prevents compiler from complaining.	×
247	final String __message = "the `id` field is not valid because:";	×
248	__errors.add(new ValidationException(__message, e));	×
249	}	1✔
250
251	} else {
252	id = null;	×
253	}
254
255	Boolean __original_is_null = id == null;	1✔
256	if (id == null) {	1✔
257	if (__docRoot != null) {	×
258	id = java.util.Optional.of(__docRoot);	×
259	} else {
260	id = java.util.Optional.of("_:" + java.util.UUID.randomUUID().toString());	×
261	}
262	}
263	if (__original_is_null) {	1✔
264	__baseUri = __baseUri_;	×
265	} else {
266	__baseUri = (String) id.orElse(null);	1✔
267	}
268	Operation_class class_;
269	try {
270	class_ =	1✔
271	LoaderInstances
272	.uri_Operation_class_False_True_None_None
273	.loadField(__doc.get("class"), __baseUri, __loadingOptions);	1✔
274	} catch (ValidationException e) {	×
275	class_ = null; // won't be used but prevents compiler from complaining.	×
276	final String __message = "the `class` field is not valid because:";	×
277	__errors.add(new ValidationException(__message, e));	×
278	}	1✔
279	java.util.Optional<String> label;
280
281	if (__doc.containsKey("label")) {	1✔
282	try {
283	label =	×
284	LoaderInstances
285	.optional_StringInstance
286	.loadField(__doc.get("label"), __baseUri, __loadingOptions);	×
287	} catch (ValidationException e) {	×
288	label = null; // won't be used but prevents compiler from complaining.	×
289	final String __message = "the `label` field is not valid because:";	×
290	__errors.add(new ValidationException(__message, e));	×
291	}	×
292
293	} else {
294	label = null;	1✔
295	}
296	Object doc;
297
298	if (__doc.containsKey("doc")) {	1✔
299	try {
300	doc =	1✔
301	LoaderInstances
302	.union_of_NullInstance_or_StringInstance_or_array_of_StringInstance
303	.loadField(__doc.get("doc"), __baseUri, __loadingOptions);	1✔
304	} catch (ValidationException e) {	×
305	doc = null; // won't be used but prevents compiler from complaining.	×
306	final String __message = "the `doc` field is not valid because:";	×
307	__errors.add(new ValidationException(__message, e));	×
308	}	1✔
309
310	} else {
311	doc = null;	×
312	}
313	java.util.List<Object> inputs;
314	try {
315	inputs =	1✔
316	LoaderInstances
317	.idmap_inputs_array_of_OperationInputParameter
318	.loadField(__doc.get("inputs"), __baseUri, __loadingOptions);	1✔
319	} catch (ValidationException e) {	×
320	inputs = null; // won't be used but prevents compiler from complaining.	×
321	final String __message = "the `inputs` field is not valid because:";	×
322	__errors.add(new ValidationException(__message, e));	×
323	}	1✔
324	java.util.List<Object> outputs;
325	try {
326	outputs =	1✔
327	LoaderInstances
328	.idmap_outputs_array_of_OperationOutputParameter
329	.loadField(__doc.get("outputs"), __baseUri, __loadingOptions);	1✔
330	} catch (ValidationException e) {	×
331	outputs = null; // won't be used but prevents compiler from complaining.	×
332	final String __message = "the `outputs` field is not valid because:";	×
333	__errors.add(new ValidationException(__message, e));	×
334	}	1✔
335	java.util.Optional<java.util.List<Object>> requirements;
336
337	if (__doc.containsKey("requirements")) {	1✔
338	try {
339	requirements =	1✔
340	LoaderInstances
341	.idmap_requirements_optional_array_of_union_of_InlineJavascriptRequirement_or_SchemaDefRequirement_or_LoadListingRequirement_or_DockerRequirement_or_SoftwareRequirement_or_InitialWorkDirRequirement_or_EnvVarRequirement_or_ShellCommandRequirement_or_ResourceRequirement_or_WorkReuse_or_NetworkAccess_or_InplaceUpdateRequirement_or_ToolTimeLimit_or_SubworkflowFeatureRequirement_or_ScatterFeatureRequirement_or_MultipleInputFeatureRequirement_or_StepInputExpressionRequirement
342	.loadField(__doc.get("requirements"), __baseUri, __loadingOptions);	1✔
343	} catch (ValidationException e) {	×
344	requirements = null; // won't be used but prevents compiler from complaining.	×
345	final String __message = "the `requirements` field is not valid because:";	×
346	__errors.add(new ValidationException(__message, e));	×
347	}	1✔
348
349	} else {
350	requirements = null;	1✔
351	}
352	java.util.Optional<java.util.List<Object>> hints;
353
354	if (__doc.containsKey("hints")) {	1✔
355	try {
356	hints =	×
357	LoaderInstances
358	.idmap_hints_optional_array_of_union_of_InlineJavascriptRequirement_or_SchemaDefRequirement_or_LoadListingRequirement_or_DockerRequirement_or_SoftwareRequirement_or_InitialWorkDirRequirement_or_EnvVarRequirement_or_ShellCommandRequirement_or_ResourceRequirement_or_WorkReuse_or_NetworkAccess_or_InplaceUpdateRequirement_or_ToolTimeLimit_or_SubworkflowFeatureRequirement_or_ScatterFeatureRequirement_or_MultipleInputFeatureRequirement_or_StepInputExpressionRequirement_or_AnyInstance
359	.loadField(__doc.get("hints"), __baseUri, __loadingOptions);	×
360	} catch (ValidationException e) {	×
361	hints = null; // won't be used but prevents compiler from complaining.	×
362	final String __message = "the `hints` field is not valid because:";	×
363	__errors.add(new ValidationException(__message, e));	×
364	}	×
365
366	} else {
367	hints = null;	1✔
368	}
369	java.util.Optional<CWLVersion> cwlVersion;
370
371	if (__doc.containsKey("cwlVersion")) {	1✔
372	try {
373	cwlVersion =	1✔
374	LoaderInstances
375	.uri_optional_CWLVersion_False_True_None_None
376	.loadField(__doc.get("cwlVersion"), __baseUri, __loadingOptions);	1✔
377	} catch (ValidationException e) {	×
378	cwlVersion = null; // won't be used but prevents compiler from complaining.	×
379	final String __message = "the `cwlVersion` field is not valid because:";	×
380	__errors.add(new ValidationException(__message, e));	×
381	}	1✔
382
383	} else {
384	cwlVersion = null;	1✔
385	}
386	java.util.Optional<java.util.List<String>> intent;
387
388	if (__doc.containsKey("intent")) {	1✔
389	try {
390	intent =	×
391	LoaderInstances
392	.uri_optional_array_of_StringInstance_True_False_None_None
393	.loadField(__doc.get("intent"), __baseUri, __loadingOptions);	×
394	} catch (ValidationException e) {	×
395	intent = null; // won't be used but prevents compiler from complaining.	×
396	final String __message = "the `intent` field is not valid because:";	×
397	__errors.add(new ValidationException(__message, e));	×
398	}	×
399
400	} else {
401	intent = null;	1✔
402	}
403	if (!__errors.isEmpty()) {	1✔
404	throw new ValidationException("Trying 'RecordField'", __errors);	×
405	}
406	this.id = (java.util.Optional<String>) id;	1✔
407	this.label = (java.util.Optional<String>) label;	1✔
408	this.doc = (Object) doc;	1✔
409	this.inputs = (java.util.List<Object>) inputs;	1✔
410	this.outputs = (java.util.List<Object>) outputs;	1✔
411	this.requirements = (java.util.Optional<java.util.List<Object>>) requirements;	1✔
412	this.hints = (java.util.Optional<java.util.List<Object>>) hints;	1✔
413	this.cwlVersion = (java.util.Optional<CWLVersion>) cwlVersion;	1✔
414	this.intent = (java.util.Optional<java.util.List<String>>) intent;	1✔
415	this.class_ = (Operation_class) class_;	1✔
416	for (String field:__doc.keySet()) {	1✔
417	if (!attrs.contains(field)) {	1✔
NEW 418	if (field.contains(":")) {	×
NEW 419	String expanded_field = __loadingOptions.expandUrl(field, "", false, false, null);	×
NEW 420	extensionFields_.put(expanded_field, __doc.get(field));	×
421	}
422	}
423	}	1✔
424	}	1✔
425	private java.util.List<String> attrs = java.util.Arrays.asList("id", "label", "doc", "inputs", "outputs", "requirements", "hints", "cwlVersion", "intent", "class");	1✔
426	}

common-workflow-language / cwljava / #389

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