#389

Committed 30 Oct 2025 05:13PM UTC coverage: 58.693% (-0.8%) from 59.538%

Build # #389

Build Type

Pull #218

github

Committed by

web-flow

Commit Message

Merge 98b159202 into befd7e4b9

Pull Request Pull Request #218: Populate the extensionFields; add public accessors for LoadingOptions

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28 existing lines in 27 files now uncovered.

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44.12

/src/main/java/org/w3id/cwl/cwl1_2/CommandInputRecordFieldImpl.java

// Copyright Common Workflow Language project contributors
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
//      http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.

package org.w3id.cwl.cwl1_2;

import org.w3id.cwl.cwl1_2.utils.LoaderInstances;
import org.w3id.cwl.cwl1_2.utils.LoadingOptions;
import org.w3id.cwl.cwl1_2.utils.LoadingOptionsBuilder;
import org.w3id.cwl.cwl1_2.utils.SaveableImpl;
import org.w3id.cwl.cwl1_2.utils.ValidationException;

/**
* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#CommandInputRecordField</I><BR>
 */
public class CommandInputRecordFieldImpl extends SaveableImpl implements CommandInputRecordField {
  private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();
  private java.util.Map<String, Object> extensionFields_ =
      new java.util.HashMap<String, Object>();
  public LoadingOptions getLoadingOptions() {
    return this.loadingOptions_;
  }
  public java.util.Map<String, Object> getExtensionFields() {
    return this.extensionFields_;
  }

  private String name;

  /**
   * Getter for property <I>https://w3id.org/cwl/salad#RecordField/name</I><BR>
   * <BLOCKQUOTE>
   * The name of the field
   *    * </BLOCKQUOTE>
   */

  public String getName() {
    return this.name;
  }

  private Object doc;

  /**
   * Getter for property <I>https://w3id.org/cwl/salad#Documented/doc</I><BR>
   * <BLOCKQUOTE>
   * A documentation string for this object, or an array of strings which should be concatenated.   * </BLOCKQUOTE>
   */

  public Object getDoc() {
    return this.doc;
  }

  private Object type;

  /**
   * Getter for property <I>https://w3id.org/cwl/salad#type</I><BR>
   * <BLOCKQUOTE>
   * The field type
   *    * </BLOCKQUOTE>
   */

  public Object getType() {
    return this.type;
  }

  private java.util.Optional<String> label;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#Labeled/label</I><BR>
   * <BLOCKQUOTE>
   * A short, human-readable label of this object.   * </BLOCKQUOTE>
   */

  public java.util.Optional<String> getLabel() {
    return this.label;
  }

  private Object secondaryFiles;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#secondaryFiles</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: File` or is an array of `items: File`.
   * 
   * Provides a pattern or expression specifying files or
   * directories that should be included alongside the primary
   * file.  Secondary files may be required or optional.  When not
   * explicitly specified, secondary files specified for `inputs`
   * are required and `outputs` are optional.  An implementation
   * must include matching Files and Directories in the
   * `secondaryFiles` property of the primary file.  These Files
   * and Directories must be transferred and staged alongside the
   * primary file.  An implementation may fail workflow execution
   * if a required secondary file does not exist.
   * 
   * If the value is an expression, the value of `self` in the expression
   * must be the primary input or output File object to which this binding
   * applies.  The `basename`, `nameroot` and `nameext` fields must be
   * present in `self`.  For `CommandLineTool` outputs the `path` field must
   * also be present.  The expression must return a filename string relative
   * to the path to the primary File, a File or Directory object with either
   * `path` or `location` and `basename` fields set, or an array consisting
   * of strings or File or Directory objects.  It is legal to reference an
   * unchanged File or Directory object taken from input as a secondaryFile.
   * The expression may return "null" in which case there is no secondaryFile
   * from that expression.
   * 
   * To work on non-filename-preserving storage systems, portable tool
   * descriptions should avoid constructing new values from `location`, but
   * should construct relative references using `basename` or `nameroot`
   * instead.
   * 
   * If a value in `secondaryFiles` is a string that is not an expression,
   * it specifies that the following pattern should be applied to the path
   * of the primary file to yield a filename relative to the primary File:
   * 
   *   1. If string ends with `?` character, remove the last `?` and mark
   *     the resulting secondary file as optional.
   *   2. If string begins with one or more caret `^` characters, for each
   *     caret, remove the last file extension from the path (the last
   *     period `.` and all following characters).  If there are no file
   *     extensions, the path is unchanged.
   *   3. Append the remainder of the string to the end of the file path.
   *    * </BLOCKQUOTE>
   */

  public Object getSecondaryFiles() {
    return this.secondaryFiles;
  }

  private java.util.Optional<Boolean> streamable;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#FieldBase/streamable</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: File` or is an array of `items: File`.
   * 
   * A value of `true` indicates that the file is read or written
   * sequentially without seeking.  An implementation may use this flag to
   * indicate whether it is valid to stream file contents using a named
   * pipe.  Default: `false`.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<Boolean> getStreamable() {
    return this.streamable;
  }

  private Object format;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#format</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: File` or is an array of `items: File`.
   * 
   * This must be one or more IRIs of concept nodes
   * that represents file formats which are allowed as input to this
   * parameter, preferably defined within an ontology.  If no ontology is
   * available, file formats may be tested by exact match.
   *    * </BLOCKQUOTE>
   */

  public Object getFormat() {
    return this.format;
  }

  private java.util.Optional<Boolean> loadContents;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#LoadContents/loadContents</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: File` or is an array of `items: File`.
   * 
   * If true, the file (or each file in the array) must be a UTF-8
   * text file 64 KiB or smaller, and the implementation must read
   * the entire contents of the file (or file array) and place it
   * in the `contents` field of the File object for use by
   * expressions.  If the size of the file is greater than 64 KiB,
   * the implementation must raise a fatal error.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<Boolean> getLoadContents() {
    return this.loadContents;
  }

  private java.util.Optional<LoadListingEnum> loadListing;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#LoadContents/loadListing</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: Directory` or is an array of `items: Directory`.
   * 
   * Specify the desired behavior for loading the `listing` field of
   * a Directory object for use by expressions.
   * 
   * The order of precedence for loadListing is:
   * 
   *   1. `loadListing` on an individual parameter
   *   2. Inherited from `LoadListingRequirement`
   *   3. By default: `no_listing`
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<LoadListingEnum> getLoadListing() {
    return this.loadListing;
  }

  private java.util.Optional<CommandLineBinding> inputBinding;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#CommandLineBindable/inputBinding</I><BR>
   * <BLOCKQUOTE>
   * Describes how to turn this object into command line arguments.   * </BLOCKQUOTE>
   */

  public java.util.Optional<CommandLineBinding> getInputBinding() {
    return this.inputBinding;
  }

  /**
   * Used by {@link org.w3id.cwl.cwl1_2.utils.RootLoader} to construct instances of CommandInputRecordFieldImpl.
   *
   * @param __doc_            Document fragment to load this record object from (presumably a
                              {@link java.util.Map}).
   * @param __baseUri_        Base URI to generate child document IDs against.
   * @param __loadingOptions  Context for loading URIs and populating objects.
   * @param __docRoot_        ID at this position in the document (if available) (maybe?)
   * @throws ValidationException If the document fragment is not a {@link java.util.Map}
   *                             or validation of fields fails.
   */
  public CommandInputRecordFieldImpl(
      final Object __doc_,
      final String __baseUri_,
      LoadingOptions __loadingOptions,
      final String __docRoot_) {
    super(__doc_, __baseUri_, __loadingOptions, __docRoot_);
    // Prefix plumbing variables with '__' to reduce likelihood of collision with
    // generated names.
    String __baseUri = __baseUri_;
    String __docRoot = __docRoot_;
    if (!(__doc_ instanceof java.util.Map)) {
      throw new ValidationException("CommandInputRecordFieldImpl called on non-map");
    }
    final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;
    final java.util.List<ValidationException> __errors =
        new java.util.ArrayList<ValidationException>();
    if (__loadingOptions != null) {
      this.loadingOptions_ = __loadingOptions;
    }
    String name;

    if (__doc.containsKey("name")) {
      try {
        name =
            LoaderInstances
                .uri_StringInstance_True_False_None_None
                .loadField(__doc.get("name"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        name = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `name` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      name = null;
    }

    if (name == null) {
      if (__docRoot != null) {
        name = __docRoot;
      } else {
        throw new ValidationException("Missing name");
      }
    }
    __baseUri = (String) name;
    Object doc;

    if (__doc.containsKey("doc")) {
      try {
        doc =
            LoaderInstances
                .union_of_NullInstance_or_StringInstance_or_array_of_StringInstance
                .loadField(__doc.get("doc"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        doc = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `doc` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      doc = null;
    }
    Object type;
    try {
      type =
          LoaderInstances
              .typedsl_union_of_CWLType_or_CommandInputRecordSchema_or_CommandInputEnumSchema_or_CommandInputArraySchema_or_StringInstance_or_array_of_union_of_CWLType_or_CommandInputRecordSchema_or_CommandInputEnumSchema_or_CommandInputArraySchema_or_StringInstance_2
              .loadField(__doc.get("type"), __baseUri, __loadingOptions);
    } catch (ValidationException e) {
      type = null; // won't be used but prevents compiler from complaining.
      final String __message = "the `type` field is not valid because:";
      __errors.add(new ValidationException(__message, e));
    }
    java.util.Optional<String> label;

    if (__doc.containsKey("label")) {
      try {
        label =
            LoaderInstances
                .optional_StringInstance
                .loadField(__doc.get("label"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        label = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `label` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      label = null;
    }
    Object secondaryFiles;

    if (__doc.containsKey("secondaryFiles")) {
      try {
        secondaryFiles =
            LoaderInstances
                .secondaryfilesdsl_union_of_NullInstance_or_SecondaryFileSchema_or_array_of_SecondaryFileSchema
                .loadField(__doc.get("secondaryFiles"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        secondaryFiles = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `secondaryFiles` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      secondaryFiles = null;
    }
    java.util.Optional<Boolean> streamable;

    if (__doc.containsKey("streamable")) {
      try {
        streamable =
            LoaderInstances
                .optional_BooleanInstance
                .loadField(__doc.get("streamable"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        streamable = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `streamable` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      streamable = null;
    }
    Object format;

    if (__doc.containsKey("format")) {
      try {
        format =
            LoaderInstances
                .uri_union_of_NullInstance_or_StringInstance_or_array_of_StringInstance_or_ExpressionLoader_True_False_None_True
                .loadField(__doc.get("format"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        format = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `format` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      format = null;
    }
    java.util.Optional<Boolean> loadContents;

    if (__doc.containsKey("loadContents")) {
      try {
        loadContents =
            LoaderInstances
                .optional_BooleanInstance
                .loadField(__doc.get("loadContents"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        loadContents = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `loadContents` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      loadContents = null;
    }
    java.util.Optional<LoadListingEnum> loadListing;

    if (__doc.containsKey("loadListing")) {
      try {
        loadListing =
            LoaderInstances
                .optional_LoadListingEnum
                .loadField(__doc.get("loadListing"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        loadListing = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `loadListing` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      loadListing = null;
    }
    java.util.Optional<CommandLineBinding> inputBinding;

    if (__doc.containsKey("inputBinding")) {
      try {
        inputBinding =
            LoaderInstances
                .optional_CommandLineBinding
                .loadField(__doc.get("inputBinding"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        inputBinding = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `inputBinding` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      inputBinding = null;
    }
    if (!__errors.isEmpty()) {
      throw new ValidationException("Trying 'RecordField'", __errors);
    }
    this.doc = (Object) doc;
    this.name = (String) name;
    this.type = (Object) type;
    this.label = (java.util.Optional<String>) label;
    this.secondaryFiles = (Object) secondaryFiles;
    this.streamable = (java.util.Optional<Boolean>) streamable;
    this.format = (Object) format;
    this.loadContents = (java.util.Optional<Boolean>) loadContents;
    this.loadListing = (java.util.Optional<LoadListingEnum>) loadListing;
    this.inputBinding = (java.util.Optional<CommandLineBinding>) inputBinding;
    for (String field:__doc.keySet()) {
      if (!attrs.contains(field)) {
        if (field.contains(":")) {
          String expanded_field = __loadingOptions.expandUrl(field, "", false, false, null);
          extensionFields_.put(expanded_field, __doc.get(field));
        }
      }
    }
  }
  private java.util.List<String> attrs = java.util.Arrays.asList("doc", "name", "type", "label", "secondaryFiles", "streamable", "format", "loadContents", "loadListing", "inputBinding");
}

1	// Copyright Common Workflow Language project contributors
2	//
3	// Licensed under the Apache License, Version 2.0 (the "License");
4	// you may not use this file except in compliance with the License.
5	// You may obtain a copy of the License at
6	//
7	// http://www.apache.org/licenses/LICENSE-2.0
8	//
9	// Unless required by applicable law or agreed to in writing, software
10	// distributed under the License is distributed on an "AS IS" BASIS,
11	// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12	// See the License for the specific language governing permissions and
13	// limitations under the License.
14
15	package org.w3id.cwl.cwl1_2;
16
17	import org.w3id.cwl.cwl1_2.utils.LoaderInstances;
18	import org.w3id.cwl.cwl1_2.utils.LoadingOptions;
19	import org.w3id.cwl.cwl1_2.utils.LoadingOptionsBuilder;
20	import org.w3id.cwl.cwl1_2.utils.SaveableImpl;
21	import org.w3id.cwl.cwl1_2.utils.ValidationException;
22
23	/**
24	* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#CommandInputRecordField</I><BR>
25	*/
26	public class CommandInputRecordFieldImpl extends SaveableImpl implements CommandInputRecordField {
27	private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();	1✔
28	private java.util.Map<String, Object> extensionFields_ =	1✔
29	new java.util.HashMap<String, Object>();
30	public LoadingOptions getLoadingOptions() {
NEW 31	return this.loadingOptions_;	×
32	}
33	public java.util.Map<String, Object> getExtensionFields() {
34	return this.extensionFields_;	×
35	}
36
37	private String name;
38
39	/**
40	* Getter for property <I>https://w3id.org/cwl/salad#RecordField/name</I><BR>
41	* <BLOCKQUOTE>
42	* The name of the field
43	* * </BLOCKQUOTE>
44	*/
45
46	public String getName() {
47	return this.name;	×
48	}
49
50	private Object doc;
51
52	/**
53	* Getter for property <I>https://w3id.org/cwl/salad#Documented/doc</I><BR>
54	* <BLOCKQUOTE>
55	* A documentation string for this object, or an array of strings which should be concatenated. * </BLOCKQUOTE>
56	*/
57
58	public Object getDoc() {
59	return this.doc;	×
60	}
61
62	private Object type;
63
64	/**
65	* Getter for property <I>https://w3id.org/cwl/salad#type</I><BR>
66	* <BLOCKQUOTE>
67	* The field type
68	* * </BLOCKQUOTE>
69	*/
70
71	public Object getType() {
72	return this.type;	×
73	}
74
75	private java.util.Optional<String> label;
76
77	/**
78	* Getter for property <I>https://w3id.org/cwl/cwl#Labeled/label</I><BR>
79	* <BLOCKQUOTE>
80	* A short, human-readable label of this object. * </BLOCKQUOTE>
81	*/
82
83	public java.util.Optional<String> getLabel() {
84	return this.label;	×
85	}
86
87	private Object secondaryFiles;
88
89	/**
90	* Getter for property <I>https://w3id.org/cwl/cwl#secondaryFiles</I><BR>
91	* <BLOCKQUOTE>
92	* Only valid when `type: File` or is an array of `items: File`.
93	*
94	* Provides a pattern or expression specifying files or
95	* directories that should be included alongside the primary
96	* file. Secondary files may be required or optional. When not
97	* explicitly specified, secondary files specified for `inputs`
98	* are required and `outputs` are optional. An implementation
99	* must include matching Files and Directories in the
100	* `secondaryFiles` property of the primary file. These Files
101	* and Directories must be transferred and staged alongside the
102	* primary file. An implementation may fail workflow execution
103	* if a required secondary file does not exist.
104	*
105	* If the value is an expression, the value of `self` in the expression
106	* must be the primary input or output File object to which this binding
107	* applies. The `basename`, `nameroot` and `nameext` fields must be
108	* present in `self`. For `CommandLineTool` outputs the `path` field must
109	* also be present. The expression must return a filename string relative
110	* to the path to the primary File, a File or Directory object with either
111	* `path` or `location` and `basename` fields set, or an array consisting
112	* of strings or File or Directory objects. It is legal to reference an
113	* unchanged File or Directory object taken from input as a secondaryFile.
114	* The expression may return "null" in which case there is no secondaryFile
115	* from that expression.
116	*
117	* To work on non-filename-preserving storage systems, portable tool
118	* descriptions should avoid constructing new values from `location`, but
119	* should construct relative references using `basename` or `nameroot`
120	* instead.
121	*
122	* If a value in `secondaryFiles` is a string that is not an expression,
123	* it specifies that the following pattern should be applied to the path
124	* of the primary file to yield a filename relative to the primary File:
125	*
126	* 1. If string ends with `?` character, remove the last `?` and mark
127	* the resulting secondary file as optional.
128	* 2. If string begins with one or more caret `^` characters, for each
129	* caret, remove the last file extension from the path (the last
130	* period `.` and all following characters). If there are no file
131	* extensions, the path is unchanged.
132	* 3. Append the remainder of the string to the end of the file path.
133	* * </BLOCKQUOTE>
134	*/
135
136	public Object getSecondaryFiles() {
137	return this.secondaryFiles;	×
138	}
139
140	private java.util.Optional<Boolean> streamable;
141
142	/**
143	* Getter for property <I>https://w3id.org/cwl/cwl#FieldBase/streamable</I><BR>
144	* <BLOCKQUOTE>
145	* Only valid when `type: File` or is an array of `items: File`.
146	*
147	* A value of `true` indicates that the file is read or written
148	* sequentially without seeking. An implementation may use this flag to
149	* indicate whether it is valid to stream file contents using a named
150	* pipe. Default: `false`.
151	* * </BLOCKQUOTE>
152	*/
153
154	public java.util.Optional<Boolean> getStreamable() {
155	return this.streamable;	×
156	}
157
158	private Object format;
159
160	/**
161	* Getter for property <I>https://w3id.org/cwl/cwl#format</I><BR>
162	* <BLOCKQUOTE>
163	* Only valid when `type: File` or is an array of `items: File`.
164	*
165	* This must be one or more IRIs of concept nodes
166	* that represents file formats which are allowed as input to this
167	* parameter, preferably defined within an ontology. If no ontology is
168	* available, file formats may be tested by exact match.
169	* * </BLOCKQUOTE>
170	*/
171
172	public Object getFormat() {
173	return this.format;	×
174	}
175
176	private java.util.Optional<Boolean> loadContents;
177
178	/**
179	* Getter for property <I>https://w3id.org/cwl/cwl#LoadContents/loadContents</I><BR>
180	* <BLOCKQUOTE>
181	* Only valid when `type: File` or is an array of `items: File`.
182	*
183	* If true, the file (or each file in the array) must be a UTF-8
184	* text file 64 KiB or smaller, and the implementation must read
185	* the entire contents of the file (or file array) and place it
186	* in the `contents` field of the File object for use by
187	* expressions. If the size of the file is greater than 64 KiB,
188	* the implementation must raise a fatal error.
189	* * </BLOCKQUOTE>
190	*/
191
192	public java.util.Optional<Boolean> getLoadContents() {
193	return this.loadContents;	×
194	}
195
196	private java.util.Optional<LoadListingEnum> loadListing;
197
198	/**
199	* Getter for property <I>https://w3id.org/cwl/cwl#LoadContents/loadListing</I><BR>
200	* <BLOCKQUOTE>
201	* Only valid when `type: Directory` or is an array of `items: Directory`.
202	*
203	* Specify the desired behavior for loading the `listing` field of
204	* a Directory object for use by expressions.
205	*
206	* The order of precedence for loadListing is:
207	*
208	* 1. `loadListing` on an individual parameter
209	* 2. Inherited from `LoadListingRequirement`
210	* 3. By default: `no_listing`
211	* * </BLOCKQUOTE>
212	*/
213
214	public java.util.Optional<LoadListingEnum> getLoadListing() {
215	return this.loadListing;	×
216	}
217
218	private java.util.Optional<CommandLineBinding> inputBinding;
219
220	/**
221	* Getter for property <I>https://w3id.org/cwl/cwl#CommandLineBindable/inputBinding</I><BR>
222	* <BLOCKQUOTE>
223	* Describes how to turn this object into command line arguments. * </BLOCKQUOTE>
224	*/
225
226	public java.util.Optional<CommandLineBinding> getInputBinding() {
227	return this.inputBinding;	×
228	}
229
230	/**
231	* Used by {@link org.w3id.cwl.cwl1_2.utils.RootLoader} to construct instances of CommandInputRecordFieldImpl.
232	*
233	* @param __doc_ Document fragment to load this record object from (presumably a
234	{@link java.util.Map}).
235	* @param __baseUri_ Base URI to generate child document IDs against.
236	* @param __loadingOptions Context for loading URIs and populating objects.
237	* @param __docRoot_ ID at this position in the document (if available) (maybe?)
238	* @throws ValidationException If the document fragment is not a {@link java.util.Map}
239	* or validation of fields fails.
240	*/
241	public CommandInputRecordFieldImpl(
242	final Object __doc_,
243	final String __baseUri_,
244	LoadingOptions __loadingOptions,
245	final String __docRoot_) {
246	super(__doc_, __baseUri_, __loadingOptions, __docRoot_);	1✔
247	// Prefix plumbing variables with '__' to reduce likelihood of collision with
248	// generated names.
249	String __baseUri = __baseUri_;	1✔
250	String __docRoot = __docRoot_;	1✔
251	if (!(__doc_ instanceof java.util.Map)) {	1✔
252	throw new ValidationException("CommandInputRecordFieldImpl called on non-map");	×
253	}
254	final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;	1✔
255	final java.util.List<ValidationException> __errors =	1✔
256	new java.util.ArrayList<ValidationException>();
257	if (__loadingOptions != null) {	1✔
258	this.loadingOptions_ = __loadingOptions;	1✔
259	}
260	String name;
261
262	if (__doc.containsKey("name")) {	1✔
263	try {
264	name =	1✔
265	LoaderInstances
266	.uri_StringInstance_True_False_None_None
267	.loadField(__doc.get("name"), __baseUri, __loadingOptions);	1✔
268	} catch (ValidationException e) {	×
269	name = null; // won't be used but prevents compiler from complaining.	×
270	final String __message = "the `name` field is not valid because:";	×
271	__errors.add(new ValidationException(__message, e));	×
272	}	1✔
273
274	} else {
275	name = null;	×
276	}
277
278	if (name == null) {	1✔
279	if (__docRoot != null) {	×
280	name = __docRoot;	×
281	} else {
282	throw new ValidationException("Missing name");	×
283	}
284	}
285	__baseUri = (String) name;	1✔
286	Object doc;
287
288	if (__doc.containsKey("doc")) {	1✔
289	try {
290	doc =	×
291	LoaderInstances
292	.union_of_NullInstance_or_StringInstance_or_array_of_StringInstance
293	.loadField(__doc.get("doc"), __baseUri, __loadingOptions);	×
294	} catch (ValidationException e) {	×
295	doc = null; // won't be used but prevents compiler from complaining.	×
296	final String __message = "the `doc` field is not valid because:";	×
297	__errors.add(new ValidationException(__message, e));	×
298	}	×
299
300	} else {
301	doc = null;	1✔
302	}
303	Object type;
304	try {
305	type =	1✔
306	LoaderInstances
307	.typedsl_union_of_CWLType_or_CommandInputRecordSchema_or_CommandInputEnumSchema_or_CommandInputArraySchema_or_StringInstance_or_array_of_union_of_CWLType_or_CommandInputRecordSchema_or_CommandInputEnumSchema_or_CommandInputArraySchema_or_StringInstance_2
308	.loadField(__doc.get("type"), __baseUri, __loadingOptions);	1✔
309	} catch (ValidationException e) {	×
310	type = null; // won't be used but prevents compiler from complaining.	×
311	final String __message = "the `type` field is not valid because:";	×
312	__errors.add(new ValidationException(__message, e));	×
313	}	1✔
314	java.util.Optional<String> label;
315
316	if (__doc.containsKey("label")) {	1✔
317	try {
318	label =	×
319	LoaderInstances
320	.optional_StringInstance
321	.loadField(__doc.get("label"), __baseUri, __loadingOptions);	×
322	} catch (ValidationException e) {	×
323	label = null; // won't be used but prevents compiler from complaining.	×
324	final String __message = "the `label` field is not valid because:";	×
325	__errors.add(new ValidationException(__message, e));	×
326	}	×
327
328	} else {
329	label = null;	1✔
330	}
331	Object secondaryFiles;
332
333	if (__doc.containsKey("secondaryFiles")) {	1✔
334	try {
335	secondaryFiles =	1✔
336	LoaderInstances
337	.secondaryfilesdsl_union_of_NullInstance_or_SecondaryFileSchema_or_array_of_SecondaryFileSchema
338	.loadField(__doc.get("secondaryFiles"), __baseUri, __loadingOptions);	1✔
339	} catch (ValidationException e) {	×
340	secondaryFiles = null; // won't be used but prevents compiler from complaining.	×
341	final String __message = "the `secondaryFiles` field is not valid because:";	×
342	__errors.add(new ValidationException(__message, e));	×
343	}	1✔
344
345	} else {
346	secondaryFiles = null;	1✔
347	}
348	java.util.Optional<Boolean> streamable;
349
350	if (__doc.containsKey("streamable")) {	1✔
351	try {
352	streamable =	×
353	LoaderInstances
354	.optional_BooleanInstance
355	.loadField(__doc.get("streamable"), __baseUri, __loadingOptions);	×
356	} catch (ValidationException e) {	×
357	streamable = null; // won't be used but prevents compiler from complaining.	×
358	final String __message = "the `streamable` field is not valid because:";	×
359	__errors.add(new ValidationException(__message, e));	×
360	}	×
361
362	} else {
363	streamable = null;	1✔
364	}
365	Object format;
366
367	if (__doc.containsKey("format")) {	1✔
368	try {
369	format =	1✔
370	LoaderInstances
371	.uri_union_of_NullInstance_or_StringInstance_or_array_of_StringInstance_or_ExpressionLoader_True_False_None_True
372	.loadField(__doc.get("format"), __baseUri, __loadingOptions);	1✔
373	} catch (ValidationException e) {	×
374	format = null; // won't be used but prevents compiler from complaining.	×
375	final String __message = "the `format` field is not valid because:";	×
376	__errors.add(new ValidationException(__message, e));	×
377	}	1✔
378
379	} else {
380	format = null;	1✔
381	}
382	java.util.Optional<Boolean> loadContents;
383
384	if (__doc.containsKey("loadContents")) {	1✔
385	try {
386	loadContents =	×
387	LoaderInstances
388	.optional_BooleanInstance
389	.loadField(__doc.get("loadContents"), __baseUri, __loadingOptions);	×
390	} catch (ValidationException e) {	×
391	loadContents = null; // won't be used but prevents compiler from complaining.	×
392	final String __message = "the `loadContents` field is not valid because:";	×
393	__errors.add(new ValidationException(__message, e));	×
394	}	×
395
396	} else {
397	loadContents = null;	1✔
398	}
399	java.util.Optional<LoadListingEnum> loadListing;
400
401	if (__doc.containsKey("loadListing")) {	1✔
402	try {
403	loadListing =	×
404	LoaderInstances
405	.optional_LoadListingEnum
406	.loadField(__doc.get("loadListing"), __baseUri, __loadingOptions);	×
407	} catch (ValidationException e) {	×
408	loadListing = null; // won't be used but prevents compiler from complaining.	×
409	final String __message = "the `loadListing` field is not valid because:";	×
410	__errors.add(new ValidationException(__message, e));	×
411	}	×
412
413	} else {
414	loadListing = null;	1✔
415	}
416	java.util.Optional<CommandLineBinding> inputBinding;
417
418	if (__doc.containsKey("inputBinding")) {	1✔
419	try {
420	inputBinding =	1✔
421	LoaderInstances
422	.optional_CommandLineBinding
423	.loadField(__doc.get("inputBinding"), __baseUri, __loadingOptions);	1✔
424	} catch (ValidationException e) {	×
425	inputBinding = null; // won't be used but prevents compiler from complaining.	×
426	final String __message = "the `inputBinding` field is not valid because:";	×
427	__errors.add(new ValidationException(__message, e));	×
428	}	1✔
429
430	} else {
431	inputBinding = null;	1✔
432	}
433	if (!__errors.isEmpty()) {	1✔
434	throw new ValidationException("Trying 'RecordField'", __errors);	×
435	}
436	this.doc = (Object) doc;	1✔
437	this.name = (String) name;	1✔
438	this.type = (Object) type;	1✔
439	this.label = (java.util.Optional<String>) label;	1✔
440	this.secondaryFiles = (Object) secondaryFiles;	1✔
441	this.streamable = (java.util.Optional<Boolean>) streamable;	1✔
442	this.format = (Object) format;	1✔
443	this.loadContents = (java.util.Optional<Boolean>) loadContents;	1✔
444	this.loadListing = (java.util.Optional<LoadListingEnum>) loadListing;	1✔
445	this.inputBinding = (java.util.Optional<CommandLineBinding>) inputBinding;	1✔
446	for (String field:__doc.keySet()) {	1✔
447	if (!attrs.contains(field)) {	1✔
NEW 448	if (field.contains(":")) {	×
NEW 449	String expanded_field = __loadingOptions.expandUrl(field, "", false, false, null);	×
NEW 450	extensionFields_.put(expanded_field, __doc.get(field));	×
451	}
452	}
453	}	1✔
454	}	1✔
455	private java.util.List<String> attrs = java.util.Arrays.asList("doc", "name", "type", "label", "secondaryFiles", "streamable", "format", "loadContents", "loadListing", "inputBinding");	1✔
456	}

common-workflow-language / cwljava / #389

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