#388

Committed 30 Oct 2025 04:55PM UTC coverage: 58.693% (-0.8%) from 59.538%

Build # #388

Build Type

Pull #218

github

Committed by

web-flow

Commit Message

Merge ab8576a5b into befd7e4b9

Pull Request Pull Request #218: Populate the extensionFields; add public accessors for LoadingOptions

Run Details

230 of 569 new or added lines in 67 files covered. (40.42%)

28 existing lines in 27 files now uncovered.

7535 of 12838 relevant lines covered (58.69%)

0.59 hits per line

Source File
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78.13

/src/main/java/org/w3id/cwl/cwl1_2/ShellCommandRequirementImpl.java

// Copyright Common Workflow Language project contributors
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
//      http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.

package org.w3id.cwl.cwl1_2;

import org.w3id.cwl.cwl1_2.utils.LoaderInstances;
import org.w3id.cwl.cwl1_2.utils.LoadingOptions;
import org.w3id.cwl.cwl1_2.utils.LoadingOptionsBuilder;
import org.w3id.cwl.cwl1_2.utils.SaveableImpl;
import org.w3id.cwl.cwl1_2.utils.ValidationException;

/**
* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#ShellCommandRequirement</I><BR> <BLOCKQUOTE>
 Modify the behavior of CommandLineTool to generate a single string
 containing a shell command line.  Each item in the `arguments` list must
 be joined into a string separated by single spaces and quoted to prevent
 interpretation by the shell, unless `CommandLineBinding` for that argument
 contains `shellQuote: false`.  If `shellQuote: false` is specified, the
 argument is joined into the command string without quoting, which allows
 the use of shell metacharacters such as `|` for pipes.
  </BLOCKQUOTE>
 */
public class ShellCommandRequirementImpl extends SaveableImpl implements ShellCommandRequirement {
  private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();
  private java.util.Map<String, Object> extensionFields_ =
      new java.util.HashMap<String, Object>();
  public LoadingOptions getLoadingOptions() {
    return this.loadingOptions_;
  }
  public java.util.Map<String, Object> getExtensionFields() {
    return this.extensionFields_;
  }

  private ShellCommandRequirement_class class_;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#ShellCommandRequirement/class</I><BR>
   * <BLOCKQUOTE>
   * Always 'ShellCommandRequirement'   * </BLOCKQUOTE>
   */

  public ShellCommandRequirement_class getClass_() {
    return this.class_;
  }

  /**
   * Used by {@link org.w3id.cwl.cwl1_2.utils.RootLoader} to construct instances of ShellCommandRequirementImpl.
   *
   * @param __doc_            Document fragment to load this record object from (presumably a
                              {@link java.util.Map}).
   * @param __baseUri_        Base URI to generate child document IDs against.
   * @param __loadingOptions  Context for loading URIs and populating objects.
   * @param __docRoot_        ID at this position in the document (if available) (maybe?)
   * @throws ValidationException If the document fragment is not a {@link java.util.Map}
   *                             or validation of fields fails.
   */
  public ShellCommandRequirementImpl(
      final Object __doc_,
      final String __baseUri_,
      LoadingOptions __loadingOptions,
      final String __docRoot_) {
    super(__doc_, __baseUri_, __loadingOptions, __docRoot_);
    // Prefix plumbing variables with '__' to reduce likelihood of collision with
    // generated names.
    String __baseUri = __baseUri_;
    String __docRoot = __docRoot_;
    if (!(__doc_ instanceof java.util.Map)) {
      throw new ValidationException("ShellCommandRequirementImpl called on non-map");
    }
    final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;
    final java.util.List<ValidationException> __errors =
        new java.util.ArrayList<ValidationException>();
    if (__loadingOptions != null) {
      this.loadingOptions_ = __loadingOptions;
    }
    ShellCommandRequirement_class class_;
    try {
      class_ =
          LoaderInstances
              .uri_ShellCommandRequirement_class_False_True_None_None
              .loadField(__doc.get("class"), __baseUri, __loadingOptions);
    } catch (ValidationException e) {
      class_ = null; // won't be used but prevents compiler from complaining.
      final String __message = "the `class` field is not valid because:";
      __errors.add(new ValidationException(__message, e));
    }
    if (!__errors.isEmpty()) {
      throw new ValidationException("Trying 'RecordField'", __errors);
    }
    this.class_ = (ShellCommandRequirement_class) class_;
    for (String field:__doc.keySet()) {
      if (!attrs.contains(field)) {
        if (field.contains(":")) {
          String expanded_field = __loadingOptions.expandUrl(field, "", false, false, null);
          extensionFields_.put(expanded_field, __doc.get(field));
        }
      }
    }
  }
  private java.util.List<String> attrs = java.util.Arrays.asList("class");
}

1	// Copyright Common Workflow Language project contributors
2	//
3	// Licensed under the Apache License, Version 2.0 (the "License");
4	// you may not use this file except in compliance with the License.
5	// You may obtain a copy of the License at
6	//
7	// http://www.apache.org/licenses/LICENSE-2.0
8	//
9	// Unless required by applicable law or agreed to in writing, software
10	// distributed under the License is distributed on an "AS IS" BASIS,
11	// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12	// See the License for the specific language governing permissions and
13	// limitations under the License.
14
15	package org.w3id.cwl.cwl1_2;
16
17	import org.w3id.cwl.cwl1_2.utils.LoaderInstances;
18	import org.w3id.cwl.cwl1_2.utils.LoadingOptions;
19	import org.w3id.cwl.cwl1_2.utils.LoadingOptionsBuilder;
20	import org.w3id.cwl.cwl1_2.utils.SaveableImpl;
21	import org.w3id.cwl.cwl1_2.utils.ValidationException;
22
23	/**
24	* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#ShellCommandRequirement</I><BR> <BLOCKQUOTE>
25	Modify the behavior of CommandLineTool to generate a single string
26	containing a shell command line. Each item in the `arguments` list must
27	be joined into a string separated by single spaces and quoted to prevent
28	interpretation by the shell, unless `CommandLineBinding` for that argument
29	contains `shellQuote: false`. If `shellQuote: false` is specified, the
30	argument is joined into the command string without quoting, which allows
31	the use of shell metacharacters such as `\|` for pipes.
32	</BLOCKQUOTE>
33	*/
34	public class ShellCommandRequirementImpl extends SaveableImpl implements ShellCommandRequirement {
35	private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();	1✔
36	private java.util.Map<String, Object> extensionFields_ =	1✔
37	new java.util.HashMap<String, Object>();
38	public LoadingOptions getLoadingOptions() {
NEW 39	return this.loadingOptions_;	×
40	}
41	public java.util.Map<String, Object> getExtensionFields() {
42	return this.extensionFields_;	×
43	}
44
45	private ShellCommandRequirement_class class_;
46
47	/**
48	* Getter for property <I>https://w3id.org/cwl/cwl#ShellCommandRequirement/class</I><BR>
49	* <BLOCKQUOTE>
50	* Always 'ShellCommandRequirement' * </BLOCKQUOTE>
51	*/
52
53	public ShellCommandRequirement_class getClass_() {
54	return this.class_;	×
55	}
56
57	/**
58	* Used by {@link org.w3id.cwl.cwl1_2.utils.RootLoader} to construct instances of ShellCommandRequirementImpl.
59	*
60	* @param __doc_ Document fragment to load this record object from (presumably a
61	{@link java.util.Map}).
62	* @param __baseUri_ Base URI to generate child document IDs against.
63	* @param __loadingOptions Context for loading URIs and populating objects.
64	* @param __docRoot_ ID at this position in the document (if available) (maybe?)
65	* @throws ValidationException If the document fragment is not a {@link java.util.Map}
66	* or validation of fields fails.
67	*/
68	public ShellCommandRequirementImpl(
69	final Object __doc_,
70	final String __baseUri_,
71	LoadingOptions __loadingOptions,
72	final String __docRoot_) {
73	super(__doc_, __baseUri_, __loadingOptions, __docRoot_);	1✔
74	// Prefix plumbing variables with '__' to reduce likelihood of collision with
75	// generated names.
76	String __baseUri = __baseUri_;	1✔
77	String __docRoot = __docRoot_;	1✔
78	if (!(__doc_ instanceof java.util.Map)) {	1✔
79	throw new ValidationException("ShellCommandRequirementImpl called on non-map");	×
80	}
81	final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;	1✔
82	final java.util.List<ValidationException> __errors =	1✔
83	new java.util.ArrayList<ValidationException>();
84	if (__loadingOptions != null) {	1✔
85	this.loadingOptions_ = __loadingOptions;	1✔
86	}
87	ShellCommandRequirement_class class_;
88	try {
89	class_ =	1✔
90	LoaderInstances
91	.uri_ShellCommandRequirement_class_False_True_None_None
92	.loadField(__doc.get("class"), __baseUri, __loadingOptions);	1✔
93	} catch (ValidationException e) {	1✔
94	class_ = null; // won't be used but prevents compiler from complaining.	1✔
95	final String __message = "the `class` field is not valid because:";	1✔
96	__errors.add(new ValidationException(__message, e));	1✔
97	}	1✔
98	if (!__errors.isEmpty()) {	1✔
99	throw new ValidationException("Trying 'RecordField'", __errors);	1✔
100	}
101	this.class_ = (ShellCommandRequirement_class) class_;	1✔
102	for (String field:__doc.keySet()) {	1✔
103	if (!attrs.contains(field)) {	1✔
NEW 104	if (field.contains(":")) {	×
NEW 105	String expanded_field = __loadingOptions.expandUrl(field, "", false, false, null);	×
NEW 106	extensionFields_.put(expanded_field, __doc.get(field));	×
107	}
108	}
109	}	1✔
110	}	1✔
111	private java.util.List<String> attrs = java.util.Arrays.asList("class");	1✔
112	}

common-workflow-language / cwljava / #388

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