#388

Committed 30 Oct 2025 04:55PM UTC coverage: 58.693% (-0.8%) from 59.538%

Build # #388

Build Type

Pull #218

github

Committed by

web-flow

Commit Message

Merge ab8576a5b into befd7e4b9

Pull Request Pull Request #218: Populate the extensionFields; add public accessors for LoadingOptions

Run Details

230 of 569 new or added lines in 67 files covered. (40.42%)

28 existing lines in 27 files now uncovered.

7535 of 12838 relevant lines covered (58.69%)

0.59 hits per line

Source File
Press 'n' to go to next uncovered line, 'b' for previous

40.8

/src/main/java/org/w3id/cwl/cwl1_2/InputRecordFieldImpl.java

// Copyright Common Workflow Language project contributors
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
//      http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.

package org.w3id.cwl.cwl1_2;

import org.w3id.cwl.cwl1_2.utils.LoaderInstances;
import org.w3id.cwl.cwl1_2.utils.LoadingOptions;
import org.w3id.cwl.cwl1_2.utils.LoadingOptionsBuilder;
import org.w3id.cwl.cwl1_2.utils.SaveableImpl;
import org.w3id.cwl.cwl1_2.utils.ValidationException;

/**
* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#InputRecordField</I><BR>
 */
public class InputRecordFieldImpl extends SaveableImpl implements InputRecordField {
  private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();
  private java.util.Map<String, Object> extensionFields_ =
      new java.util.HashMap<String, Object>();
  public LoadingOptions getLoadingOptions() {
    return this.loadingOptions_;
  }
  public java.util.Map<String, Object> getExtensionFields() {
    return this.extensionFields_;
  }

  private String name;

  /**
   * Getter for property <I>https://w3id.org/cwl/salad#RecordField/name</I><BR>
   * <BLOCKQUOTE>
   * The name of the field
   *    * </BLOCKQUOTE>
   */

  public String getName() {
    return this.name;
  }

  private Object doc;

  /**
   * Getter for property <I>https://w3id.org/cwl/salad#Documented/doc</I><BR>
   * <BLOCKQUOTE>
   * A documentation string for this object, or an array of strings which should be concatenated.   * </BLOCKQUOTE>
   */

  public Object getDoc() {
    return this.doc;
  }

  private Object type;

  /**
   * Getter for property <I>https://w3id.org/cwl/salad#type</I><BR>
   * <BLOCKQUOTE>
   * The field type
   *    * </BLOCKQUOTE>
   */

  public Object getType() {
    return this.type;
  }

  private java.util.Optional<String> label;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#Labeled/label</I><BR>
   * <BLOCKQUOTE>
   * A short, human-readable label of this object.   * </BLOCKQUOTE>
   */

  public java.util.Optional<String> getLabel() {
    return this.label;
  }

  private Object secondaryFiles;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#secondaryFiles</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: File` or is an array of `items: File`.
   * 
   * Provides a pattern or expression specifying files or
   * directories that should be included alongside the primary
   * file.  Secondary files may be required or optional.  When not
   * explicitly specified, secondary files specified for `inputs`
   * are required and `outputs` are optional.  An implementation
   * must include matching Files and Directories in the
   * `secondaryFiles` property of the primary file.  These Files
   * and Directories must be transferred and staged alongside the
   * primary file.  An implementation may fail workflow execution
   * if a required secondary file does not exist.
   * 
   * If the value is an expression, the value of `self` in the expression
   * must be the primary input or output File object to which this binding
   * applies.  The `basename`, `nameroot` and `nameext` fields must be
   * present in `self`.  For `CommandLineTool` outputs the `path` field must
   * also be present.  The expression must return a filename string relative
   * to the path to the primary File, a File or Directory object with either
   * `path` or `location` and `basename` fields set, or an array consisting
   * of strings or File or Directory objects.  It is legal to reference an
   * unchanged File or Directory object taken from input as a secondaryFile.
   * The expression may return "null" in which case there is no secondaryFile
   * from that expression.
   * 
   * To work on non-filename-preserving storage systems, portable tool
   * descriptions should avoid constructing new values from `location`, but
   * should construct relative references using `basename` or `nameroot`
   * instead.
   * 
   * If a value in `secondaryFiles` is a string that is not an expression,
   * it specifies that the following pattern should be applied to the path
   * of the primary file to yield a filename relative to the primary File:
   * 
   *   1. If string ends with `?` character, remove the last `?` and mark
   *     the resulting secondary file as optional.
   *   2. If string begins with one or more caret `^` characters, for each
   *     caret, remove the last file extension from the path (the last
   *     period `.` and all following characters).  If there are no file
   *     extensions, the path is unchanged.
   *   3. Append the remainder of the string to the end of the file path.
   *    * </BLOCKQUOTE>
   */

  public Object getSecondaryFiles() {
    return this.secondaryFiles;
  }

  private java.util.Optional<Boolean> streamable;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#FieldBase/streamable</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: File` or is an array of `items: File`.
   * 
   * A value of `true` indicates that the file is read or written
   * sequentially without seeking.  An implementation may use this flag to
   * indicate whether it is valid to stream file contents using a named
   * pipe.  Default: `false`.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<Boolean> getStreamable() {
    return this.streamable;
  }

  private Object format;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#format</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: File` or is an array of `items: File`.
   * 
   * This must be one or more IRIs of concept nodes
   * that represents file formats which are allowed as input to this
   * parameter, preferably defined within an ontology.  If no ontology is
   * available, file formats may be tested by exact match.
   *    * </BLOCKQUOTE>
   */

  public Object getFormat() {
    return this.format;
  }

  private java.util.Optional<Boolean> loadContents;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#LoadContents/loadContents</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: File` or is an array of `items: File`.
   * 
   * If true, the file (or each file in the array) must be a UTF-8
   * text file 64 KiB or smaller, and the implementation must read
   * the entire contents of the file (or file array) and place it
   * in the `contents` field of the File object for use by
   * expressions.  If the size of the file is greater than 64 KiB,
   * the implementation must raise a fatal error.
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<Boolean> getLoadContents() {
    return this.loadContents;
  }

  private java.util.Optional<LoadListingEnum> loadListing;

  /**
   * Getter for property <I>https://w3id.org/cwl/cwl#LoadContents/loadListing</I><BR>
   * <BLOCKQUOTE>
   * Only valid when `type: Directory` or is an array of `items: Directory`.
   * 
   * Specify the desired behavior for loading the `listing` field of
   * a Directory object for use by expressions.
   * 
   * The order of precedence for loadListing is:
   * 
   *   1. `loadListing` on an individual parameter
   *   2. Inherited from `LoadListingRequirement`
   *   3. By default: `no_listing`
   *    * </BLOCKQUOTE>
   */

  public java.util.Optional<LoadListingEnum> getLoadListing() {
    return this.loadListing;
  }

  /**
   * Used by {@link org.w3id.cwl.cwl1_2.utils.RootLoader} to construct instances of InputRecordFieldImpl.
   *
   * @param __doc_            Document fragment to load this record object from (presumably a
                              {@link java.util.Map}).
   * @param __baseUri_        Base URI to generate child document IDs against.
   * @param __loadingOptions  Context for loading URIs and populating objects.
   * @param __docRoot_        ID at this position in the document (if available) (maybe?)
   * @throws ValidationException If the document fragment is not a {@link java.util.Map}
   *                             or validation of fields fails.
   */
  public InputRecordFieldImpl(
      final Object __doc_,
      final String __baseUri_,
      LoadingOptions __loadingOptions,
      final String __docRoot_) {
    super(__doc_, __baseUri_, __loadingOptions, __docRoot_);
    // Prefix plumbing variables with '__' to reduce likelihood of collision with
    // generated names.
    String __baseUri = __baseUri_;
    String __docRoot = __docRoot_;
    if (!(__doc_ instanceof java.util.Map)) {
      throw new ValidationException("InputRecordFieldImpl called on non-map");
    }
    final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;
    final java.util.List<ValidationException> __errors =
        new java.util.ArrayList<ValidationException>();
    if (__loadingOptions != null) {
      this.loadingOptions_ = __loadingOptions;
    }
    String name;

    if (__doc.containsKey("name")) {
      try {
        name =
            LoaderInstances
                .uri_StringInstance_True_False_None_None
                .loadField(__doc.get("name"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        name = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `name` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      name = null;
    }

    if (name == null) {
      if (__docRoot != null) {
        name = __docRoot;
      } else {
        throw new ValidationException("Missing name");
      }
    }
    __baseUri = (String) name;
    Object doc;

    if (__doc.containsKey("doc")) {
      try {
        doc =
            LoaderInstances
                .union_of_NullInstance_or_StringInstance_or_array_of_StringInstance
                .loadField(__doc.get("doc"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        doc = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `doc` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      doc = null;
    }
    Object type;
    try {
      type =
          LoaderInstances
              .typedsl_union_of_CWLType_or_InputRecordSchema_or_InputEnumSchema_or_InputArraySchema_or_StringInstance_or_array_of_union_of_CWLType_or_InputRecordSchema_or_InputEnumSchema_or_InputArraySchema_or_StringInstance_2
              .loadField(__doc.get("type"), __baseUri, __loadingOptions);
    } catch (ValidationException e) {
      type = null; // won't be used but prevents compiler from complaining.
      final String __message = "the `type` field is not valid because:";
      __errors.add(new ValidationException(__message, e));
    }
    java.util.Optional<String> label;

    if (__doc.containsKey("label")) {
      try {
        label =
            LoaderInstances
                .optional_StringInstance
                .loadField(__doc.get("label"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        label = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `label` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      label = null;
    }
    Object secondaryFiles;

    if (__doc.containsKey("secondaryFiles")) {
      try {
        secondaryFiles =
            LoaderInstances
                .secondaryfilesdsl_union_of_NullInstance_or_SecondaryFileSchema_or_array_of_SecondaryFileSchema
                .loadField(__doc.get("secondaryFiles"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        secondaryFiles = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `secondaryFiles` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      secondaryFiles = null;
    }
    java.util.Optional<Boolean> streamable;

    if (__doc.containsKey("streamable")) {
      try {
        streamable =
            LoaderInstances
                .optional_BooleanInstance
                .loadField(__doc.get("streamable"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        streamable = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `streamable` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      streamable = null;
    }
    Object format;

    if (__doc.containsKey("format")) {
      try {
        format =
            LoaderInstances
                .uri_union_of_NullInstance_or_StringInstance_or_array_of_StringInstance_or_ExpressionLoader_True_False_None_True
                .loadField(__doc.get("format"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        format = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `format` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      format = null;
    }
    java.util.Optional<Boolean> loadContents;

    if (__doc.containsKey("loadContents")) {
      try {
        loadContents =
            LoaderInstances
                .optional_BooleanInstance
                .loadField(__doc.get("loadContents"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        loadContents = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `loadContents` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      loadContents = null;
    }
    java.util.Optional<LoadListingEnum> loadListing;

    if (__doc.containsKey("loadListing")) {
      try {
        loadListing =
            LoaderInstances
                .optional_LoadListingEnum
                .loadField(__doc.get("loadListing"), __baseUri, __loadingOptions);
      } catch (ValidationException e) {
        loadListing = null; // won't be used but prevents compiler from complaining.
        final String __message = "the `loadListing` field is not valid because:";
        __errors.add(new ValidationException(__message, e));
      }

    } else {
      loadListing = null;
    }
    if (!__errors.isEmpty()) {
      throw new ValidationException("Trying 'RecordField'", __errors);
    }
    this.doc = (Object) doc;
    this.name = (String) name;
    this.type = (Object) type;
    this.label = (java.util.Optional<String>) label;
    this.secondaryFiles = (Object) secondaryFiles;
    this.streamable = (java.util.Optional<Boolean>) streamable;
    this.format = (Object) format;
    this.loadContents = (java.util.Optional<Boolean>) loadContents;
    this.loadListing = (java.util.Optional<LoadListingEnum>) loadListing;
    for (String field:__doc.keySet()) {
      if (!attrs.contains(field)) {
        if (field.contains(":")) {
          String expanded_field = __loadingOptions.expandUrl(field, "", false, false, null);
          extensionFields_.put(expanded_field, __doc.get(field));
        }
      }
    }
  }
  private java.util.List<String> attrs = java.util.Arrays.asList("doc", "name", "type", "label", "secondaryFiles", "streamable", "format", "loadContents", "loadListing");
}

1	// Copyright Common Workflow Language project contributors
2	//
3	// Licensed under the Apache License, Version 2.0 (the "License");
4	// you may not use this file except in compliance with the License.
5	// You may obtain a copy of the License at
6	//
7	// http://www.apache.org/licenses/LICENSE-2.0
8	//
9	// Unless required by applicable law or agreed to in writing, software
10	// distributed under the License is distributed on an "AS IS" BASIS,
11	// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12	// See the License for the specific language governing permissions and
13	// limitations under the License.
14
15	package org.w3id.cwl.cwl1_2;
16
17	import org.w3id.cwl.cwl1_2.utils.LoaderInstances;
18	import org.w3id.cwl.cwl1_2.utils.LoadingOptions;
19	import org.w3id.cwl.cwl1_2.utils.LoadingOptionsBuilder;
20	import org.w3id.cwl.cwl1_2.utils.SaveableImpl;
21	import org.w3id.cwl.cwl1_2.utils.ValidationException;
22
23	/**
24	* Auto-generated class implementation for <I>https://w3id.org/cwl/cwl#InputRecordField</I><BR>
25	*/
26	public class InputRecordFieldImpl extends SaveableImpl implements InputRecordField {
27	private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();	1✔
28	private java.util.Map<String, Object> extensionFields_ =	1✔
29	new java.util.HashMap<String, Object>();
30	public LoadingOptions getLoadingOptions() {
NEW 31	return this.loadingOptions_;	×
32	}
33	public java.util.Map<String, Object> getExtensionFields() {
34	return this.extensionFields_;	×
35	}
36
37	private String name;
38
39	/**
40	* Getter for property <I>https://w3id.org/cwl/salad#RecordField/name</I><BR>
41	* <BLOCKQUOTE>
42	* The name of the field
43	* * </BLOCKQUOTE>
44	*/
45
46	public String getName() {
47	return this.name;	×
48	}
49
50	private Object doc;
51
52	/**
53	* Getter for property <I>https://w3id.org/cwl/salad#Documented/doc</I><BR>
54	* <BLOCKQUOTE>
55	* A documentation string for this object, or an array of strings which should be concatenated. * </BLOCKQUOTE>
56	*/
57
58	public Object getDoc() {
59	return this.doc;	×
60	}
61
62	private Object type;
63
64	/**
65	* Getter for property <I>https://w3id.org/cwl/salad#type</I><BR>
66	* <BLOCKQUOTE>
67	* The field type
68	* * </BLOCKQUOTE>
69	*/
70
71	public Object getType() {
72	return this.type;	×
73	}
74
75	private java.util.Optional<String> label;
76
77	/**
78	* Getter for property <I>https://w3id.org/cwl/cwl#Labeled/label</I><BR>
79	* <BLOCKQUOTE>
80	* A short, human-readable label of this object. * </BLOCKQUOTE>
81	*/
82
83	public java.util.Optional<String> getLabel() {
84	return this.label;	×
85	}
86
87	private Object secondaryFiles;
88
89	/**
90	* Getter for property <I>https://w3id.org/cwl/cwl#secondaryFiles</I><BR>
91	* <BLOCKQUOTE>
92	* Only valid when `type: File` or is an array of `items: File`.
93	*
94	* Provides a pattern or expression specifying files or
95	* directories that should be included alongside the primary
96	* file. Secondary files may be required or optional. When not
97	* explicitly specified, secondary files specified for `inputs`
98	* are required and `outputs` are optional. An implementation
99	* must include matching Files and Directories in the
100	* `secondaryFiles` property of the primary file. These Files
101	* and Directories must be transferred and staged alongside the
102	* primary file. An implementation may fail workflow execution
103	* if a required secondary file does not exist.
104	*
105	* If the value is an expression, the value of `self` in the expression
106	* must be the primary input or output File object to which this binding
107	* applies. The `basename`, `nameroot` and `nameext` fields must be
108	* present in `self`. For `CommandLineTool` outputs the `path` field must
109	* also be present. The expression must return a filename string relative
110	* to the path to the primary File, a File or Directory object with either
111	* `path` or `location` and `basename` fields set, or an array consisting
112	* of strings or File or Directory objects. It is legal to reference an
113	* unchanged File or Directory object taken from input as a secondaryFile.
114	* The expression may return "null" in which case there is no secondaryFile
115	* from that expression.
116	*
117	* To work on non-filename-preserving storage systems, portable tool
118	* descriptions should avoid constructing new values from `location`, but
119	* should construct relative references using `basename` or `nameroot`
120	* instead.
121	*
122	* If a value in `secondaryFiles` is a string that is not an expression,
123	* it specifies that the following pattern should be applied to the path
124	* of the primary file to yield a filename relative to the primary File:
125	*
126	* 1. If string ends with `?` character, remove the last `?` and mark
127	* the resulting secondary file as optional.
128	* 2. If string begins with one or more caret `^` characters, for each
129	* caret, remove the last file extension from the path (the last
130	* period `.` and all following characters). If there are no file
131	* extensions, the path is unchanged.
132	* 3. Append the remainder of the string to the end of the file path.
133	* * </BLOCKQUOTE>
134	*/
135
136	public Object getSecondaryFiles() {
137	return this.secondaryFiles;	×
138	}
139
140	private java.util.Optional<Boolean> streamable;
141
142	/**
143	* Getter for property <I>https://w3id.org/cwl/cwl#FieldBase/streamable</I><BR>
144	* <BLOCKQUOTE>
145	* Only valid when `type: File` or is an array of `items: File`.
146	*
147	* A value of `true` indicates that the file is read or written
148	* sequentially without seeking. An implementation may use this flag to
149	* indicate whether it is valid to stream file contents using a named
150	* pipe. Default: `false`.
151	* * </BLOCKQUOTE>
152	*/
153
154	public java.util.Optional<Boolean> getStreamable() {
155	return this.streamable;	×
156	}
157
158	private Object format;
159
160	/**
161	* Getter for property <I>https://w3id.org/cwl/cwl#format</I><BR>
162	* <BLOCKQUOTE>
163	* Only valid when `type: File` or is an array of `items: File`.
164	*
165	* This must be one or more IRIs of concept nodes
166	* that represents file formats which are allowed as input to this
167	* parameter, preferably defined within an ontology. If no ontology is
168	* available, file formats may be tested by exact match.
169	* * </BLOCKQUOTE>
170	*/
171
172	public Object getFormat() {
173	return this.format;	×
174	}
175
176	private java.util.Optional<Boolean> loadContents;
177
178	/**
179	* Getter for property <I>https://w3id.org/cwl/cwl#LoadContents/loadContents</I><BR>
180	* <BLOCKQUOTE>
181	* Only valid when `type: File` or is an array of `items: File`.
182	*
183	* If true, the file (or each file in the array) must be a UTF-8
184	* text file 64 KiB or smaller, and the implementation must read
185	* the entire contents of the file (or file array) and place it
186	* in the `contents` field of the File object for use by
187	* expressions. If the size of the file is greater than 64 KiB,
188	* the implementation must raise a fatal error.
189	* * </BLOCKQUOTE>
190	*/
191
192	public java.util.Optional<Boolean> getLoadContents() {
193	return this.loadContents;	×
194	}
195
196	private java.util.Optional<LoadListingEnum> loadListing;
197
198	/**
199	* Getter for property <I>https://w3id.org/cwl/cwl#LoadContents/loadListing</I><BR>
200	* <BLOCKQUOTE>
201	* Only valid when `type: Directory` or is an array of `items: Directory`.
202	*
203	* Specify the desired behavior for loading the `listing` field of
204	* a Directory object for use by expressions.
205	*
206	* The order of precedence for loadListing is:
207	*
208	* 1. `loadListing` on an individual parameter
209	* 2. Inherited from `LoadListingRequirement`
210	* 3. By default: `no_listing`
211	* * </BLOCKQUOTE>
212	*/
213
214	public java.util.Optional<LoadListingEnum> getLoadListing() {
215	return this.loadListing;	×
216	}
217
218	/**
219	* Used by {@link org.w3id.cwl.cwl1_2.utils.RootLoader} to construct instances of InputRecordFieldImpl.
220	*
221	* @param __doc_ Document fragment to load this record object from (presumably a
222	{@link java.util.Map}).
223	* @param __baseUri_ Base URI to generate child document IDs against.
224	* @param __loadingOptions Context for loading URIs and populating objects.
225	* @param __docRoot_ ID at this position in the document (if available) (maybe?)
226	* @throws ValidationException If the document fragment is not a {@link java.util.Map}
227	* or validation of fields fails.
228	*/
229	public InputRecordFieldImpl(
230	final Object __doc_,
231	final String __baseUri_,
232	LoadingOptions __loadingOptions,
233	final String __docRoot_) {
234	super(__doc_, __baseUri_, __loadingOptions, __docRoot_);	1✔
235	// Prefix plumbing variables with '__' to reduce likelihood of collision with
236	// generated names.
237	String __baseUri = __baseUri_;	1✔
238	String __docRoot = __docRoot_;	1✔
239	if (!(__doc_ instanceof java.util.Map)) {	1✔
240	throw new ValidationException("InputRecordFieldImpl called on non-map");	×
241	}
242	final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;	1✔
243	final java.util.List<ValidationException> __errors =	1✔
244	new java.util.ArrayList<ValidationException>();
245	if (__loadingOptions != null) {	1✔
246	this.loadingOptions_ = __loadingOptions;	1✔
247	}
248	String name;
249
250	if (__doc.containsKey("name")) {	1✔
251	try {
252	name =	1✔
253	LoaderInstances
254	.uri_StringInstance_True_False_None_None
255	.loadField(__doc.get("name"), __baseUri, __loadingOptions);	1✔
256	} catch (ValidationException e) {	×
257	name = null; // won't be used but prevents compiler from complaining.	×
258	final String __message = "the `name` field is not valid because:";	×
259	__errors.add(new ValidationException(__message, e));	×
260	}	1✔
261
262	} else {
263	name = null;	×
264	}
265
266	if (name == null) {	1✔
267	if (__docRoot != null) {	×
268	name = __docRoot;	×
269	} else {
270	throw new ValidationException("Missing name");	×
271	}
272	}
273	__baseUri = (String) name;	1✔
274	Object doc;
275
276	if (__doc.containsKey("doc")) {	1✔
277	try {
278	doc =	×
279	LoaderInstances
280	.union_of_NullInstance_or_StringInstance_or_array_of_StringInstance
281	.loadField(__doc.get("doc"), __baseUri, __loadingOptions);	×
282	} catch (ValidationException e) {	×
283	doc = null; // won't be used but prevents compiler from complaining.	×
284	final String __message = "the `doc` field is not valid because:";	×
285	__errors.add(new ValidationException(__message, e));	×
286	}	×
287
288	} else {
289	doc = null;	1✔
290	}
291	Object type;
292	try {
293	type =	1✔
294	LoaderInstances
295	.typedsl_union_of_CWLType_or_InputRecordSchema_or_InputEnumSchema_or_InputArraySchema_or_StringInstance_or_array_of_union_of_CWLType_or_InputRecordSchema_or_InputEnumSchema_or_InputArraySchema_or_StringInstance_2
296	.loadField(__doc.get("type"), __baseUri, __loadingOptions);	1✔
297	} catch (ValidationException e) {	×
298	type = null; // won't be used but prevents compiler from complaining.	×
299	final String __message = "the `type` field is not valid because:";	×
300	__errors.add(new ValidationException(__message, e));	×
301	}	1✔
302	java.util.Optional<String> label;
303
304	if (__doc.containsKey("label")) {	1✔
305	try {
306	label =	×
307	LoaderInstances
308	.optional_StringInstance
309	.loadField(__doc.get("label"), __baseUri, __loadingOptions);	×
310	} catch (ValidationException e) {	×
311	label = null; // won't be used but prevents compiler from complaining.	×
312	final String __message = "the `label` field is not valid because:";	×
313	__errors.add(new ValidationException(__message, e));	×
314	}	×
315
316	} else {
317	label = null;	1✔
318	}
319	Object secondaryFiles;
320
321	if (__doc.containsKey("secondaryFiles")) {	1✔
322	try {
323	secondaryFiles =	1✔
324	LoaderInstances
325	.secondaryfilesdsl_union_of_NullInstance_or_SecondaryFileSchema_or_array_of_SecondaryFileSchema
326	.loadField(__doc.get("secondaryFiles"), __baseUri, __loadingOptions);	1✔
327	} catch (ValidationException e) {	×
328	secondaryFiles = null; // won't be used but prevents compiler from complaining.	×
329	final String __message = "the `secondaryFiles` field is not valid because:";	×
330	__errors.add(new ValidationException(__message, e));	×
331	}	1✔
332
333	} else {
334	secondaryFiles = null;	1✔
335	}
336	java.util.Optional<Boolean> streamable;
337
338	if (__doc.containsKey("streamable")) {	1✔
339	try {
340	streamable =	×
341	LoaderInstances
342	.optional_BooleanInstance
343	.loadField(__doc.get("streamable"), __baseUri, __loadingOptions);	×
344	} catch (ValidationException e) {	×
345	streamable = null; // won't be used but prevents compiler from complaining.	×
346	final String __message = "the `streamable` field is not valid because:";	×
347	__errors.add(new ValidationException(__message, e));	×
348	}	×
349
350	} else {
351	streamable = null;	1✔
352	}
353	Object format;
354
355	if (__doc.containsKey("format")) {	1✔
356	try {
357	format =	×
358	LoaderInstances
359	.uri_union_of_NullInstance_or_StringInstance_or_array_of_StringInstance_or_ExpressionLoader_True_False_None_True
360	.loadField(__doc.get("format"), __baseUri, __loadingOptions);	×
361	} catch (ValidationException e) {	×
362	format = null; // won't be used but prevents compiler from complaining.	×
363	final String __message = "the `format` field is not valid because:";	×
364	__errors.add(new ValidationException(__message, e));	×
365	}	×
366
367	} else {
368	format = null;	1✔
369	}
370	java.util.Optional<Boolean> loadContents;
371
372	if (__doc.containsKey("loadContents")) {	1✔
373	try {
374	loadContents =	×
375	LoaderInstances
376	.optional_BooleanInstance
377	.loadField(__doc.get("loadContents"), __baseUri, __loadingOptions);	×
378	} catch (ValidationException e) {	×
379	loadContents = null; // won't be used but prevents compiler from complaining.	×
380	final String __message = "the `loadContents` field is not valid because:";	×
381	__errors.add(new ValidationException(__message, e));	×
382	}	×
383
384	} else {
385	loadContents = null;	1✔
386	}
387	java.util.Optional<LoadListingEnum> loadListing;
388
389	if (__doc.containsKey("loadListing")) {	1✔
390	try {
391	loadListing =	×
392	LoaderInstances
393	.optional_LoadListingEnum
394	.loadField(__doc.get("loadListing"), __baseUri, __loadingOptions);	×
395	} catch (ValidationException e) {	×
396	loadListing = null; // won't be used but prevents compiler from complaining.	×
397	final String __message = "the `loadListing` field is not valid because:";	×
398	__errors.add(new ValidationException(__message, e));	×
399	}	×
400
401	} else {
402	loadListing = null;	1✔
403	}
404	if (!__errors.isEmpty()) {	1✔
405	throw new ValidationException("Trying 'RecordField'", __errors);	×
406	}
407	this.doc = (Object) doc;	1✔
408	this.name = (String) name;	1✔
409	this.type = (Object) type;	1✔
410	this.label = (java.util.Optional<String>) label;	1✔
411	this.secondaryFiles = (Object) secondaryFiles;	1✔
412	this.streamable = (java.util.Optional<Boolean>) streamable;	1✔
413	this.format = (Object) format;	1✔
414	this.loadContents = (java.util.Optional<Boolean>) loadContents;	1✔
415	this.loadListing = (java.util.Optional<LoadListingEnum>) loadListing;	1✔
416	for (String field:__doc.keySet()) {	1✔
417	if (!attrs.contains(field)) {	1✔
NEW 418	if (field.contains(":")) {	×
NEW 419	String expanded_field = __loadingOptions.expandUrl(field, "", false, false, null);	×
NEW 420	extensionFields_.put(expanded_field, __doc.get(field));	×
421	}
422	}
423	}	1✔
424	}	1✔
425	private java.util.List<String> attrs = java.util.Arrays.asList("doc", "name", "type", "label", "secondaryFiles", "streamable", "format", "loadContents", "loadListing");	1✔
426	}

common-workflow-language / cwljava / #388

Source File Press 'n' to go to next uncovered line, 'b' for previous

Source File
Press 'n' to go to next uncovered line, 'b' for previous