18477247352

Committed 13 Oct 2025 08:18PM UTC coverage: 72.391% (+0.4%) from 71.943%

Build # 18477247352

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Commit Message

Merge pull request #140 from paulmthompson/kdtree

Jules PR

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164 of 287 new or added lines in 3 files covered. (57.14%)

350 existing lines in 9 files now uncovered.

51889 of 71679 relevant lines covered (72.39%)

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87.14

/src/DataManager/transforms/TransformRegistry.cpp

#include "TransformRegistry.hpp"

#include "transforms/AnalogTimeSeries/AnalogFilter/analog_filter.hpp"
#include "transforms/AnalogTimeSeries/AnalogHilbertPhase/analog_hilbert_phase.hpp"
#include "transforms/AnalogTimeSeries/Analog_Event_Threshold/analog_event_threshold.hpp"
#include "transforms/AnalogTimeSeries/Analog_Interval_Threshold/analog_interval_threshold.hpp"
#include "transforms/AnalogTimeSeries/Analog_Scaling/analog_scaling.hpp"
#include "transforms/DigitalIntervalSeries/Digital_Interval_Group/digital_interval_group.hpp"
#include "transforms/Lines/Line_Alignment/line_alignment.hpp"
#include "transforms/Lines/Line_Angle/line_angle.hpp"
#include "transforms/Lines/Line_Base_Flip/line_base_flip.hpp"
#include "transforms/Lines/Line_Clip/line_clip.hpp"
#include "transforms/Lines/Line_Curvature/line_curvature.hpp"
#include "transforms/Lines/Line_Min_Point_Dist/line_min_point_dist.hpp"
#include "transforms/Lines/Line_Point_Extraction/line_point_extraction.hpp"
#include "transforms/Lines/Line_Proximity_Grouping/line_proximity_grouping.hpp"
#include "transforms/Lines/Line_Kalman_Grouping/line_kalman_grouping.hpp"
#include "transforms/Lines/Line_Resample/line_resample.hpp"
#include "transforms/Lines/Line_Subsegment/line_subsegment.hpp"
#include "transforms/Points/Point_Particle_Filter/point_particle_filter.hpp"
#include "transforms/Masks/Mask_Area/mask_area.hpp"
#include "transforms/Masks/Mask_Centroid/mask_centroid.hpp"
#include "transforms/Masks/Mask_Connected_Component/mask_connected_component.hpp"
#include "transforms/Masks/Mask_Hole_Filling/mask_hole_filling.hpp"
#include "transforms/Masks/Mask_Median_Filter/mask_median_filter.hpp"
#include "transforms/Masks/Mask_Principal_Axis/mask_principal_axis.hpp"
#include "transforms/Masks/Mask_Skeletonize/mask_skeletonize.hpp"
#include "transforms/Masks/Mask_To_Line/mask_to_line.hpp"
#include "transforms/Media/whisker_tracing.hpp"

#include <iostream>// For init messages
#include <map>
#include <memory>// unique_ptr
#include <string>
#include <typeindex>
#include <variant>// Needed for the public interface
#include <vector>


TransformRegistry::TransformRegistry() {

    std::cout << "Initializing Operation Registry..." << std::endl;

    _registerOperation(std::make_unique<MaskAreaOperation>());
    _registerOperation(std::make_unique<MaskCentroidOperation>());
    _registerOperation(std::make_unique<MaskConnectedComponentOperation>());
    _registerOperation(std::make_unique<MaskHoleFillingOperation>());
    _registerOperation(std::make_unique<MaskMedianFilterOperation>());
    _registerOperation(std::make_unique<MaskPrincipalAxisOperation>());
    _registerOperation(std::make_unique<MaskToLineOperation>());
    _registerOperation(std::make_unique<MaskSkeletonizeOperation>());
    _registerOperation(std::make_unique<EventThresholdOperation>());
    _registerOperation(std::make_unique<IntervalThresholdOperation>());
    _registerOperation(std::make_unique<HilbertPhaseOperation>());
    _registerOperation(std::make_unique<AnalogScalingOperation>());
    _registerOperation(std::make_unique<LineAngleOperation>());
    _registerOperation(std::make_unique<LineMinPointDistOperation>());
    _registerOperation(std::make_unique<LineAlignmentOperation>());
    _registerOperation(std::make_unique<LineBaseFlipTransform>());
    _registerOperation(std::make_unique<LineResampleOperation>());
    _registerOperation(std::make_unique<LineCurvatureOperation>());
    _registerOperation(std::make_unique<LineSubsegmentOperation>());
    _registerOperation(std::make_unique<LinePointExtractionOperation>());
    _registerOperation(std::make_unique<LineClipOperation>());
    _registerOperation(std::make_unique<LineProximityGroupingOperation>());
    _registerOperation(std::make_unique<LineKalmanGroupingOperation>());
    _registerOperation(std::make_unique<PointParticleFilterOperation>());
    _registerOperation(std::make_unique<GroupOperation>());
    _registerOperation(std::make_unique<AnalogFilterOperation>());
    _registerOperation(std::make_unique<WhiskerTracingOperation>());

    _computeApplicableOperations();
    std::cout << "Operation Registry Initialized." << std::endl;
}

std::vector<std::string> TransformRegistry::getOperationNamesForVariant(DataTypeVariant const & dataVariant) const {
    // Get the type_index of the type currently stored in the variant.
    // Note: std::variant::type() returns the type_index of the *alternative*,
    // which in our case IS the std::shared_ptr<T>. This matches what
    // getTargetInputTypeIndex() should return.
    auto current_type_index = std::visit([](auto & v) -> std::type_index { return typeid(v); }, dataVariant);

    // Look up the type index in the pre-computed map
    auto it = type_index_to_op_names_.find(current_type_index);
    if (it != type_index_to_op_names_.end()) {
        return it->second;// Return the pre-computed list of names
    } else {
        // No registered operation targets this specific type_index.
        // This is normal if a data type has no operations defined for it.
        return {};// Return empty vector
    }
}

TransformOperation * TransformRegistry::findOperationByName(std::string const & operation_name) const {
    auto it = name_to_operation_.find(operation_name);
    if (it != name_to_operation_.end()) {
        return it->second;
    } else {
        // std::cerr << "Warning: Requested operation name not found: '" << operation_name << "'" << std::endl;
        return nullptr;
    }
}

void TransformRegistry::_registerOperation(std::unique_ptr<TransformOperation> op) {
    if (!op) return;
    std::string op_name = op->getName();
    if (name_to_operation_.count(op_name)) {
        std::cerr << "Warning: Operation with name '" << op_name << "' already registered." << std::endl;
        return;
    }
    std::cout << "Registering operation: " << op_name
              << " (Targets type index: " << op->getTargetInputTypeIndex().name() << ")"// Debug info
              << std::endl;
    name_to_operation_[op_name] = op.get();
    all_operations_.push_back(std::move(op));
}

void TransformRegistry::_computeApplicableOperations() {
    std::cout << "Computing applicable operations based on registered operations..." << std::endl;
    type_index_to_op_names_.clear();// Start fresh

    for (auto const & op_ptr: all_operations_) {
        if (!op_ptr) continue;
        // Get the type index this operation says it targets
        std::type_index target_type_index = op_ptr->getTargetInputTypeIndex();
        // Get the user-facing name of the operation
        std::string op_name = op_ptr->getName();

        // Add this operation's name to the list for its target type index
        type_index_to_op_names_[target_type_index].push_back(op_name);
    }

    std::cout << "Finished computing applicable operations." << std::endl;
// Debug print (optional): shows mangled names for type_index keys internally
#ifndef NDEBUG// Example: Only print in debug builds
    for (auto const & pair: type_index_to_op_names_) {
        std::cout << "  TypeIndex Hash(" << pair.first.hash_code()
                  << ", Name=" << pair.first.name() << ") supports: ";
        for (auto const & name: pair.second) std::cout << "'" << name << "' ";
        std::cout << std::endl;
    }
#endif
}

1	#include "TransformRegistry.hpp"
2
3	#include "transforms/AnalogTimeSeries/AnalogFilter/analog_filter.hpp"
4	#include "transforms/AnalogTimeSeries/AnalogHilbertPhase/analog_hilbert_phase.hpp"
5	#include "transforms/AnalogTimeSeries/Analog_Event_Threshold/analog_event_threshold.hpp"
6	#include "transforms/AnalogTimeSeries/Analog_Interval_Threshold/analog_interval_threshold.hpp"
7	#include "transforms/AnalogTimeSeries/Analog_Scaling/analog_scaling.hpp"
8	#include "transforms/DigitalIntervalSeries/Digital_Interval_Group/digital_interval_group.hpp"
9	#include "transforms/Lines/Line_Alignment/line_alignment.hpp"
10	#include "transforms/Lines/Line_Angle/line_angle.hpp"
11	#include "transforms/Lines/Line_Base_Flip/line_base_flip.hpp"
12	#include "transforms/Lines/Line_Clip/line_clip.hpp"
13	#include "transforms/Lines/Line_Curvature/line_curvature.hpp"
14	#include "transforms/Lines/Line_Min_Point_Dist/line_min_point_dist.hpp"
15	#include "transforms/Lines/Line_Point_Extraction/line_point_extraction.hpp"
16	#include "transforms/Lines/Line_Proximity_Grouping/line_proximity_grouping.hpp"
17	#include "transforms/Lines/Line_Kalman_Grouping/line_kalman_grouping.hpp"
18	#include "transforms/Lines/Line_Resample/line_resample.hpp"
19	#include "transforms/Lines/Line_Subsegment/line_subsegment.hpp"
20	#include "transforms/Points/Point_Particle_Filter/point_particle_filter.hpp"
21	#include "transforms/Masks/Mask_Area/mask_area.hpp"
22	#include "transforms/Masks/Mask_Centroid/mask_centroid.hpp"
23	#include "transforms/Masks/Mask_Connected_Component/mask_connected_component.hpp"
24	#include "transforms/Masks/Mask_Hole_Filling/mask_hole_filling.hpp"
25	#include "transforms/Masks/Mask_Median_Filter/mask_median_filter.hpp"
26	#include "transforms/Masks/Mask_Principal_Axis/mask_principal_axis.hpp"
27	#include "transforms/Masks/Mask_Skeletonize/mask_skeletonize.hpp"
28	#include "transforms/Masks/Mask_To_Line/mask_to_line.hpp"
29	#include "transforms/Media/whisker_tracing.hpp"
30
31	#include <iostream>// For init messages
32	#include <map>
33	#include <memory>// unique_ptr
34	#include <string>
35	#include <typeindex>
36	#include <variant>// Needed for the public interface
37	#include <vector>
38
39
40	TransformRegistry::TransformRegistry() {	74✔
41
42	std::cout << "Initializing Operation Registry..." << std::endl;	74✔
43
44	_registerOperation(std::make_unique<MaskAreaOperation>());	74✔
45	_registerOperation(std::make_unique<MaskCentroidOperation>());	74✔
46	_registerOperation(std::make_unique<MaskConnectedComponentOperation>());	74✔
47	_registerOperation(std::make_unique<MaskHoleFillingOperation>());	74✔
48	_registerOperation(std::make_unique<MaskMedianFilterOperation>());	74✔
49	_registerOperation(std::make_unique<MaskPrincipalAxisOperation>());	74✔
50	_registerOperation(std::make_unique<MaskToLineOperation>());	74✔
51	_registerOperation(std::make_unique<MaskSkeletonizeOperation>());	74✔
52	_registerOperation(std::make_unique<EventThresholdOperation>());	74✔
53	_registerOperation(std::make_unique<IntervalThresholdOperation>());	74✔
54	_registerOperation(std::make_unique<HilbertPhaseOperation>());	74✔
55	_registerOperation(std::make_unique<AnalogScalingOperation>());	74✔
56	_registerOperation(std::make_unique<LineAngleOperation>());	74✔
57	_registerOperation(std::make_unique<LineMinPointDistOperation>());	74✔
58	_registerOperation(std::make_unique<LineAlignmentOperation>());	74✔
59	_registerOperation(std::make_unique<LineBaseFlipTransform>());	74✔
60	_registerOperation(std::make_unique<LineResampleOperation>());	74✔
61	_registerOperation(std::make_unique<LineCurvatureOperation>());	74✔
62	_registerOperation(std::make_unique<LineSubsegmentOperation>());	74✔
63	_registerOperation(std::make_unique<LinePointExtractionOperation>());	74✔
64	_registerOperation(std::make_unique<LineClipOperation>());	74✔
65	_registerOperation(std::make_unique<LineProximityGroupingOperation>());	74✔
66	_registerOperation(std::make_unique<LineKalmanGroupingOperation>());	74✔
67	_registerOperation(std::make_unique<PointParticleFilterOperation>());	74✔
68	_registerOperation(std::make_unique<GroupOperation>());	74✔
69	_registerOperation(std::make_unique<AnalogFilterOperation>());	74✔
70	_registerOperation(std::make_unique<WhiskerTracingOperation>());	74✔
71
72	_computeApplicableOperations();	74✔
73	std::cout << "Operation Registry Initialized." << std::endl;	74✔
74	}	74✔
75
UNCOV 76	std::vector<std::string> TransformRegistry::getOperationNamesForVariant(DataTypeVariant const & dataVariant) const {	×
77	// Get the type_index of the type currently stored in the variant.
78	// Note: std::variant::type() returns the type_index of the alternative,
79	// which in our case IS the std::shared_ptr<T>. This matches what
80	// getTargetInputTypeIndex() should return.
81	auto current_type_index = std::visit([](auto & v) -> std::type_index { return typeid(v); }, dataVariant);	×
82
83	// Look up the type index in the pre-computed map
UNCOV 84	auto it = type_index_to_op_names_.find(current_type_index);	×
UNCOV 85	if (it != type_index_to_op_names_.end()) {	×
86	return it->second;// Return the pre-computed list of names	×
87	} else {
88	// No registered operation targets this specific type_index.
89	// This is normal if a data type has no operations defined for it.
UNCOV 90	return {};// Return empty vector	×
91	}
92	}
93
94	TransformOperation * TransformRegistry::findOperationByName(std::string const & operation_name) const {	222✔
95	auto it = name_to_operation_.find(operation_name);	222✔
96	if (it != name_to_operation_.end()) {	222✔
97	return it->second;	222✔
98	} else {
99	// std::cerr << "Warning: Requested operation name not found: '" << operation_name << "'" << std::endl;
UNCOV 100	return nullptr;	×
101	}
102	}
103
104	void TransformRegistry::_registerOperation(std::unique_ptr<TransformOperation> op) {	1,998✔
105	if (!op) return;	1,998✔
106	std::string op_name = op->getName();	1,998✔
107	if (name_to_operation_.count(op_name)) {	1,998✔
UNCOV 108	std::cerr << "Warning: Operation with name '" << op_name << "' already registered." << std::endl;	×
UNCOV 109	return;	×
110	}
111	std::cout << "Registering operation: " << op_name
112	<< " (Targets type index: " << op->getTargetInputTypeIndex().name() << ")"// Debug info	5,994✔
113	<< std::endl;	3,996✔
114	name_to_operation_[op_name] = op.get();	1,998✔
115	all_operations_.push_back(std::move(op));	1,998✔
116	}	1,998✔
117
118	void TransformRegistry::_computeApplicableOperations() {	74✔
119	std::cout << "Computing applicable operations based on registered operations..." << std::endl;	74✔
120	type_index_to_op_names_.clear();// Start fresh	74✔
121
122	for (auto const & op_ptr: all_operations_) {	2,072✔
123	if (!op_ptr) continue;	1,998✔
124	// Get the type index this operation says it targets
125	std::type_index target_type_index = op_ptr->getTargetInputTypeIndex();	1,998✔
126	// Get the user-facing name of the operation
127	std::string op_name = op_ptr->getName();	1,998✔
128
129	// Add this operation's name to the list for its target type index
130	type_index_to_op_names_[target_type_index].push_back(op_name);	1,998✔
131	}	1,998✔
132
133	std::cout << "Finished computing applicable operations." << std::endl;	74✔
134	// Debug print (optional): shows mangled names for type_index keys internally
135	#ifndef NDEBUG// Example: Only print in debug builds
136	for (auto const & pair: type_index_to_op_names_) {	518✔
137	std::cout << " TypeIndex Hash(" << pair.first.hash_code()	444✔
138	<< ", Name=" << pair.first.name() << ") supports: ";	444✔
139	for (auto const & name: pair.second) std::cout << "'" << name << "' ";	2,442✔
140	std::cout << std::endl;	444✔
141	}
142	#endif
143	}	74✔

paulmthompson / WhiskerToolbox / 18477247352

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