18220763586

Committed 03 Oct 2025 11:16AM UTC coverage: 13.734% (+0.01%) from 13.724%

Build # 18220763586

Build Type

push

github

Committed by

tkuhn

Commit Message

style: Remove "I"/"me" and just show user name

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446 of 4106 branches covered (10.86%)

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40.91

src/main/java/com/knowledgepixels/nanodash/component/NanodashLink.java

package com.knowledgepixels.nanodash.component;

import com.knowledgepixels.nanodash.User;
import com.knowledgepixels.nanodash.Utils;
import com.knowledgepixels.nanodash.connector.ios.DsConfig;
import com.knowledgepixels.nanodash.connector.ios.DsNanopubPage;
import com.knowledgepixels.nanodash.connector.pensoft.BdjConfig;
import com.knowledgepixels.nanodash.connector.pensoft.BdjNanopubPage;
import com.knowledgepixels.nanodash.connector.pensoft.RioConfig;
import com.knowledgepixels.nanodash.connector.pensoft.RioNanopubPage;
import com.knowledgepixels.nanodash.page.ExplorePage;
import com.knowledgepixels.nanodash.template.Template;
import com.knowledgepixels.nanodash.template.TemplateData;
import net.trustyuri.TrustyUriUtils;
import org.apache.commons.codec.Charsets;
import org.apache.wicket.Component;
import org.apache.wicket.behavior.AttributeAppender;
import org.apache.wicket.markup.html.basic.Label;
import org.apache.wicket.markup.html.link.BookmarkablePageLink;
import org.apache.wicket.markup.html.link.ExternalLink;
import org.apache.wicket.markup.html.panel.Panel;
import org.apache.wicket.model.Model;
import org.apache.wicket.request.mapper.parameter.PageParameters;
import org.eclipse.rdf4j.model.IRI;
import org.eclipse.rdf4j.model.Statement;
import org.eclipse.rdf4j.model.ValueFactory;
import org.eclipse.rdf4j.model.impl.SimpleValueFactory;
import org.eclipse.rdf4j.model.vocabulary.RDFS;
import org.nanopub.Nanopub;
import org.nanopub.vocabulary.NP;
import org.nanopub.vocabulary.NTEMPLATE;

import java.net.URLEncoder;
import java.util.*;

/**
 * A Wicket component that creates a link to a nanopublication or an IRI.
 */
public class NanodashLink extends Panel {

    /**
     * Creates a link to a nanopublication or an IRI.
     *
     * @param id             the Wicket component ID
     * @param uri            the URI of the nanopublication or IRI
     * @param np             the nanopublication, or null if the link is not to a nanopublication
     * @param templateClass  the template class of the nanopublication, or null if the link is not to a nanopublication
     * @param label          the label to display for the link, or null to derive it from the nanopublication or IRI
     */
    public NanodashLink(String id, String uri, Nanopub np, IRI templateClass, String label) {
        super(id);

        final List<Template> templates = new ArrayList<>();
        final Map<IRI, String> labels = new HashMap<>();
        if (np != null) {
            for (Statement st : np.getPubinfo()) {
                if (st.getPredicate().equals(NTEMPLATE.HAS_LABEL_FROM_API) || st.getPredicate().equals(RDFS.LABEL)) {
                    labels.put((IRI) st.getSubject(), st.getObject().stringValue());
                }
            }
        }

        final TemplateData td = TemplateData.get();

        if (NTEMPLATE.ASSERTION_TEMPLATE.equals(templateClass)) {
            IRI templateId = td.getTemplateId(np);
            if (templateId != null) {
                templates.add(td.getTemplate(templateId.stringValue()));
            }
        } else if (NTEMPLATE.PROVENANCE_TEMPLATE.equals(templateClass)) {
            IRI templateId = td.getProvenanceTemplateId(np);
            if (templateId != null) {
                templates.add(td.getTemplate(templateId.stringValue()));
            }
        } else if (NTEMPLATE.PUBINFO_TEMPLATE.equals(templateClass)) {
            Set<IRI> templateIds = td.getPubinfoTemplateIds(np);
            for (IRI templateId : templateIds) {
                templates.add(td.getTemplate(templateId.stringValue()));
            }
        }

        final IRI iriObj = vf.createIRI(uri);
        if (np != null && uri.equals(np.getUri().stringValue())) {
            ExternalLink link = new ExternalLink("link", ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(uri, Charsets.UTF_8), "this");
            add(link);
            add(new Label("description", "this specific nanopublication"));
        } else if (np != null && uri.equals(np.getAssertionUri().stringValue())) {
            ExternalLink link = new ExternalLink("link", ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(uri, Charsets.UTF_8), "this assertion");
            link.add(new AttributeAppender("class", " nanopub-assertion "));
            add(link);
            add(new Label("description", "the assertion of this specific nanopublication"));
        } else if (uri.equals(NP.HAS_ASSERTION.stringValue())) {
            ExternalLink link = new ExternalLink("link", ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(uri, Charsets.UTF_8), "assertion");
            link.add(new AttributeAppender("class", " nanopub-assertion "));
            add(link);
            add(new Label("description", "links a nanopublication to its assertion"));
        } else if (uri.equals(NP.HAS_PROVENANCE.stringValue())) {
            ExternalLink link = new ExternalLink("link", ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(uri, Charsets.UTF_8), "provenance");
            link.add(new AttributeAppender("class", " nanopub-provenance "));
            add(link);
            add(new Label("description", "links a nanopublication to its provenance"));
        } else if (uri.equals(NP.HAS_PUBINFO.stringValue())) {
            ExternalLink link = new ExternalLink("link", ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(uri, Charsets.UTF_8), "pubinfo");
            link.add(new AttributeAppender("class", " nanopub-pubinfo "));
            add(link);
            add(new Label("description", "links a nanopublication to its pubinfo"));
        } else {
            if (label == null || label.isBlank()) {
                label = IriItem.getShortNameFromURI(uri);
                if (iriObj.equals(User.getSignatureOwnerIri(np))) {
                    // TODO We might want to introduce a "(you)" flag here at some point
                    label = User.getShortDisplayName(iriObj);
                } else if (User.getName(iriObj) != null) {
                    label = User.getShortDisplayName(iriObj);
                } else {
                    for (Template template : templates) {
                        // TODO For pubinfo templates, we don't consider which triple came from which template (which is non-trivial):
                        String l = template.getLabel(iriObj);
                        if (l != null) {
                            label = l;
                            break;
                        }
                        l = labels.get(iriObj);
                        if (l != null) {
                            label = l;
                            break;
                        }
                    }
                }
            }
            String shortLabel = label.replaceFirst(" - [\\s\\S]*$", "");
            add(createLink("link", uri, shortLabel));
            String description = "";
            if (np != null && uri.startsWith(np.getUri().stringValue())) {
                description = "This is a local identifier that was minted when the nanopublication was created.";
            }
            if (label.contains(" - ")) description = label.replaceFirst("^.* - ", "");
            add(new Label("description", description));
        }
        add(Utils.getUriLink("uri", uri));
    }

    /**
     * <p>createLink.</p>
     *
     * @param markupId a {@link java.lang.String} object
     * @param uri      a {@link java.lang.String} object
     * @param label    a {@link java.lang.String} object
     * @return a {@link org.apache.wicket.Component} object
     */
    public static Component createLink(String markupId, String uri, String label) {
        boolean isNp = TrustyUriUtils.isPotentialTrustyUri(uri);
        // TODO Improve this
        if (isNp && uri.startsWith(DsConfig.get().getTargetNamespace())) {
            return new BookmarkablePageLink<Void>(markupId, DsNanopubPage.class, new PageParameters().add("id", uri).add("mode", "final")).setBody(Model.of(label));
        } else if (isNp && uri.startsWith(BdjConfig.get().getTargetNamespace())) {
            return new BookmarkablePageLink<Void>(markupId, BdjNanopubPage.class, new PageParameters().add("id", uri).add("mode", "final")).setBody(Model.of(label));
        } else if (isNp && uri.startsWith(RioConfig.get().getTargetNamespace())) {
            return new BookmarkablePageLink<Void>(markupId, RioNanopubPage.class, new PageParameters().add("id", uri).add("mode", "final")).setBody(Model.of(label));
        } else {
            return new BookmarkablePageLink<Void>(markupId, ExplorePage.class, new PageParameters().add("id", uri).add("label", label)).setBody(Model.of(label));
        }
    }

    /**
     * Creates a link to a nanopublication or an IRI.
     *
     * @param id             the Wicket component ID
     * @param uri            the URI of the nanopublication or IRI
     * @param np             the nanopublication, or null if the link is not to a nanopublication
     * @param templateClass  the template class of the nanopublication, or null if the link is not to a nanopublication
     */
    public NanodashLink(String id, String uri, Nanopub np, IRI templateClass) {
        this(id, uri, np, templateClass, null);
    }

    /**
     * Creates a link to a nanopublication or an IRI.
     *
     * @param id  the Wicket component ID
     * @param uri the URI of the nanopublication or IRI
     * @param np  the nanopublication, or null if the link is not to a nanopublication
     */
    public NanodashLink(String id, String uri, Nanopub np) {
        this(id, uri, np, null);
    }

    /**
     * Creates a link to a nanopublication or an IRI.
     *
     * @param id  the Wicket component ID
     * @param uri the URI of the nanopublication or IRI
     */
    public NanodashLink(String id, String uri) {
        this(id, uri, null, null);
    }

    private static ValueFactory vf = SimpleValueFactory.getInstance();

}

1	package com.knowledgepixels.nanodash.component;
2
3	import com.knowledgepixels.nanodash.User;
4	import com.knowledgepixels.nanodash.Utils;
5	import com.knowledgepixels.nanodash.connector.ios.DsConfig;
6	import com.knowledgepixels.nanodash.connector.ios.DsNanopubPage;
7	import com.knowledgepixels.nanodash.connector.pensoft.BdjConfig;
8	import com.knowledgepixels.nanodash.connector.pensoft.BdjNanopubPage;
9	import com.knowledgepixels.nanodash.connector.pensoft.RioConfig;
10	import com.knowledgepixels.nanodash.connector.pensoft.RioNanopubPage;
11	import com.knowledgepixels.nanodash.page.ExplorePage;
12	import com.knowledgepixels.nanodash.template.Template;
13	import com.knowledgepixels.nanodash.template.TemplateData;
14	import net.trustyuri.TrustyUriUtils;
15	import org.apache.commons.codec.Charsets;
16	import org.apache.wicket.Component;
17	import org.apache.wicket.behavior.AttributeAppender;
18	import org.apache.wicket.markup.html.basic.Label;
19	import org.apache.wicket.markup.html.link.BookmarkablePageLink;
20	import org.apache.wicket.markup.html.link.ExternalLink;
21	import org.apache.wicket.markup.html.panel.Panel;
22	import org.apache.wicket.model.Model;
23	import org.apache.wicket.request.mapper.parameter.PageParameters;
24	import org.eclipse.rdf4j.model.IRI;
25	import org.eclipse.rdf4j.model.Statement;
26	import org.eclipse.rdf4j.model.ValueFactory;
27	import org.eclipse.rdf4j.model.impl.SimpleValueFactory;
28	import org.eclipse.rdf4j.model.vocabulary.RDFS;
29	import org.nanopub.Nanopub;
30	import org.nanopub.vocabulary.NP;
31	import org.nanopub.vocabulary.NTEMPLATE;
32
33	import java.net.URLEncoder;
34	import java.util.*;
35
36	/**
37	* A Wicket component that creates a link to a nanopublication or an IRI.
38	*/
39	public class NanodashLink extends Panel {
40
41	/**
42	* Creates a link to a nanopublication or an IRI.
43	*
44	* @param id the Wicket component ID
45	* @param uri the URI of the nanopublication or IRI
46	* @param np the nanopublication, or null if the link is not to a nanopublication
47	* @param templateClass the template class of the nanopublication, or null if the link is not to a nanopublication
48	* @param label the label to display for the link, or null to derive it from the nanopublication or IRI
49	*/
50	public NanodashLink(String id, String uri, Nanopub np, IRI templateClass, String label) {
51	super(id);	3✔
52
53	final List<Template> templates = new ArrayList<>();	4✔
54	final Map<IRI, String> labels = new HashMap<>();	4✔
55	if (np != null) {	2!
56	for (Statement st : np.getPubinfo()) {	11✔
57	if (st.getPredicate().equals(NTEMPLATE.HAS_LABEL_FROM_API) \|\| st.getPredicate().equals(RDFS.LABEL)) {	10!
58	labels.put((IRI) st.getSubject(), st.getObject().stringValue());	×
59	}
60	}	1✔
61	}
62
63	final TemplateData td = TemplateData.get();	2✔
64
65	if (NTEMPLATE.ASSERTION_TEMPLATE.equals(templateClass)) {	4!
66	IRI templateId = td.getTemplateId(np);	×
67	if (templateId != null) {	×
68	templates.add(td.getTemplate(templateId.stringValue()));	×
69	}
70	} else if (NTEMPLATE.PROVENANCE_TEMPLATE.equals(templateClass)) {	4!
71	IRI templateId = td.getProvenanceTemplateId(np);	×
72	if (templateId != null) {	×
73	templates.add(td.getTemplate(templateId.stringValue()));	×
74	}
75	} else if (NTEMPLATE.PUBINFO_TEMPLATE.equals(templateClass)) {	4!
76	Set<IRI> templateIds = td.getPubinfoTemplateIds(np);	×
77	for (IRI templateId : templateIds) {	×
78	templates.add(td.getTemplate(templateId.stringValue()));	×
79	}	×
80	}
81
82	final IRI iriObj = vf.createIRI(uri);	4✔
83	if (np != null && uri.equals(np.getUri().stringValue())) {	8!
84	ExternalLink link = new ExternalLink("link", ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(uri, Charsets.UTF_8), "this");	×
85	add(link);	×
86	add(new Label("description", "this specific nanopublication"));	×
87	} else if (np != null && uri.equals(np.getAssertionUri().stringValue())) {	8!
88	ExternalLink link = new ExternalLink("link", ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(uri, Charsets.UTF_8), "this assertion");	×
89	link.add(new AttributeAppender("class", " nanopub-assertion "));	×
90	add(link);	×
91	add(new Label("description", "the assertion of this specific nanopublication"));	×
92	} else if (uri.equals(NP.HAS_ASSERTION.stringValue())) {	5!
93	ExternalLink link = new ExternalLink("link", ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(uri, Charsets.UTF_8), "assertion");	×
94	link.add(new AttributeAppender("class", " nanopub-assertion "));	×
95	add(link);	×
96	add(new Label("description", "links a nanopublication to its assertion"));	×
97	} else if (uri.equals(NP.HAS_PROVENANCE.stringValue())) {	5!
98	ExternalLink link = new ExternalLink("link", ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(uri, Charsets.UTF_8), "provenance");	×
99	link.add(new AttributeAppender("class", " nanopub-provenance "));	×
100	add(link);	×
101	add(new Label("description", "links a nanopublication to its provenance"));	×
102	} else if (uri.equals(NP.HAS_PUBINFO.stringValue())) {	5!
103	ExternalLink link = new ExternalLink("link", ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(uri, Charsets.UTF_8), "pubinfo");	×
104	link.add(new AttributeAppender("class", " nanopub-pubinfo "));	×
105	add(link);	×
106	add(new Label("description", "links a nanopublication to its pubinfo"));	×
107	} else {	×
108	if (label == null \|\| label.isBlank()) {	2!
109	label = IriItem.getShortNameFromURI(uri);	3✔
110	if (iriObj.equals(User.getSignatureOwnerIri(np))) {	5!
111	// TODO We might want to introduce a "(you)" flag here at some point
112	label = User.getShortDisplayName(iriObj);	×
113	} else if (User.getName(iriObj) != null) {	3!
114	label = User.getShortDisplayName(iriObj);	×
115	} else {
116	for (Template template : templates) {	6!
117	// TODO For pubinfo templates, we don't consider which triple came from which template (which is non-trivial):
118	String l = template.getLabel(iriObj);	×
119	if (l != null) {	×
120	label = l;	×
121	break;	×
122	}
123	l = labels.get(iriObj);	×
124	if (l != null) {	×
125	label = l;	×
126	break;	×
127	}
128	}	×
129	}
130	}
131	String shortLabel = label.replaceFirst(" - [\\s\\S]*$", "");	5✔
132	add(createLink("link", uri, shortLabel));	12✔
133	String description = "";	2✔
134	if (np != null && uri.startsWith(np.getUri().stringValue())) {	8!
135	description = "This is a local identifier that was minted when the nanopublication was created.";	×
136	}
137	if (label.contains(" - ")) description = label.replaceFirst("^.* - ", "");	4!
138	add(new Label("description", description));	13✔
139	}
140	add(Utils.getUriLink("uri", uri));	11✔
141	}	1✔
142
143	/**
144	* <p>createLink.</p>
145	*
146	* @param markupId a {@link java.lang.String} object
147	* @param uri a {@link java.lang.String} object
148	* @param label a {@link java.lang.String} object
149	* @return a {@link org.apache.wicket.Component} object
150	*/
151	public static Component createLink(String markupId, String uri, String label) {
152	boolean isNp = TrustyUriUtils.isPotentialTrustyUri(uri);	3✔
153	// TODO Improve this
154	if (isNp && uri.startsWith(DsConfig.get().getTargetNamespace())) {	2!
155	return new BookmarkablePageLink<Void>(markupId, DsNanopubPage.class, new PageParameters().add("id", uri).add("mode", "final")).setBody(Model.of(label));	×
156	} else if (isNp && uri.startsWith(BdjConfig.get().getTargetNamespace())) {	2!
157	return new BookmarkablePageLink<Void>(markupId, BdjNanopubPage.class, new PageParameters().add("id", uri).add("mode", "final")).setBody(Model.of(label));	×
158	} else if (isNp && uri.startsWith(RioConfig.get().getTargetNamespace())) {	2!
159	return new BookmarkablePageLink<Void>(markupId, RioNanopubPage.class, new PageParameters().add("id", uri).add("mode", "final")).setBody(Model.of(label));	×
160	} else {
161	return new BookmarkablePageLink<Void>(markupId, ExplorePage.class, new PageParameters().add("id", uri).add("label", label)).setBody(Model.of(label));	18✔
162	}
163	}
164
165	/**
166	* Creates a link to a nanopublication or an IRI.
167	*
168	* @param id the Wicket component ID
169	* @param uri the URI of the nanopublication or IRI
170	* @param np the nanopublication, or null if the link is not to a nanopublication
171	* @param templateClass the template class of the nanopublication, or null if the link is not to a nanopublication
172	*/
173	public NanodashLink(String id, String uri, Nanopub np, IRI templateClass) {
174	this(id, uri, np, templateClass, null);	7✔
175	}	1✔
176
177	/**
178	* Creates a link to a nanopublication or an IRI.
179	*
180	* @param id the Wicket component ID
181	* @param uri the URI of the nanopublication or IRI
182	* @param np the nanopublication, or null if the link is not to a nanopublication
183	*/
184	public NanodashLink(String id, String uri, Nanopub np) {
185	this(id, uri, np, null);	×
186	}	×
187
188	/**
189	* Creates a link to a nanopublication or an IRI.
190	*
191	* @param id the Wicket component ID
192	* @param uri the URI of the nanopublication or IRI
193	*/
194	public NanodashLink(String id, String uri) {
195	this(id, uri, null, null);	×
196	}	×
197
198	private static ValueFactory vf = SimpleValueFactory.getInstance();	3✔
199
200	}

knowledgepixels / nanodash / 18220763586

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