17852532121

Committed 19 Sep 2025 08:10AM UTC coverage: 13.568% (-0.3%) from 13.87%

Build # 17852532121

Build Type

push

github

Committed by

tkuhn

Commit Message

feat: Switch to QueryRef provided by nanopub, using multimap

Run Details

428 of 4008 branches covered (10.68%)

Branch coverage included in aggregate %.

1104 of 7283 relevant lines covered (15.16%)

0.68 hits per line

Source File
Press 'n' to go to next uncovered line, 'b' for previous

0.0

src/main/java/com/knowledgepixels/nanodash/page/QueryPage.java

package com.knowledgepixels.nanodash.page;

import java.net.URLEncoder;
import java.util.List;

import org.apache.wicket.feedback.FeedbackMessage;
import org.apache.wicket.markup.html.WebMarkupContainer;
import org.apache.wicket.markup.html.basic.Label;
import org.apache.wicket.markup.html.form.Form;
import org.apache.wicket.markup.html.link.BookmarkablePageLink;
import org.apache.wicket.markup.html.link.ExternalLink;
import org.apache.wicket.markup.html.list.ListItem;
import org.apache.wicket.markup.html.list.ListView;
import org.apache.wicket.markup.html.panel.FeedbackPanel;
import org.apache.wicket.request.mapper.parameter.PageParameters;
import org.nanopub.extra.services.QueryRef;

import com.github.jsonldjava.shaded.com.google.common.base.Charsets;
import com.google.common.collect.ArrayListMultimap;
import com.google.common.collect.Multimap;
import com.knowledgepixels.nanodash.GrlcQuery;
import com.knowledgepixels.nanodash.component.QueryParamField;
import com.knowledgepixels.nanodash.component.QueryResultTable;
import com.knowledgepixels.nanodash.component.TitleBar;

/**
 * Page for displaying a query and its parameters, allowing users to run the query with specified parameters.
 */
public class QueryPage extends NanodashPage {

    /**
     * The mount path for this page.
     */
    public static final String MOUNT_PATH = "/query";

    private final Form<Void> form;
    private final List<QueryParamField> paramFields;
    private final FeedbackPanel feedbackPanel;

    /**
     * {@inheritDoc}
     */
    @Override
    public String getMountPath() {
        return MOUNT_PATH;
    }

    /**
     * Constructor for the QueryPage.
     *
     * @param parameters The page parameters, which should include the query ID and any query parameters.
     */
    public QueryPage(final PageParameters parameters) {
        super(parameters);
        add(new TitleBar("titlebar", this, null));
        add(new Label("pagetitle", "Query Info | nanodash"));

        String id = parameters.get("id").toString();
        final String queryId = parameters.get("runquery").toString();
        if (id == null) id = queryId;

        final Multimap<String, String> queryParams = ArrayListMultimap.create();
        for (String paramKey : parameters.getNamedKeys()) {
            if (!paramKey.startsWith("queryparam_")) continue;
            queryParams.put(paramKey.replaceFirst("queryparam_", ""), parameters.get(paramKey).toString());
        }

        GrlcQuery q = GrlcQuery.get(id);

        add(new Label("querylabel", q.getLabel()));
        add(new BookmarkablePageLink<Void>("np", ExplorePage.class, new PageParameters().add("id", q.getNanopub().getUri().stringValue())));
        // TODO Replace hard-coded domain with dynamic solution:
        add(new ExternalLink("openapi-this", "https://query.knowledgepixels.com/openapi/?url=spec/" + id));
        add(new ExternalLink("openapi-latest", "https://query.knowledgepixels.com/openapi/?url=spec/" + id + "%3Fapi-version=latest"));
        add(new Label("querydesc", q.getDescription()));

        form = new Form<Void>("form") {

            @Override
            protected void onConfigure() {
                super.onConfigure();
                form.getFeedbackMessages().clear();
            }

            @Override
            protected void onSubmit() {
                try {
                    PageParameters params = new PageParameters();
                    params.add("runquery", q.getQueryId());
                    for (QueryParamField f : paramFields) {
                        if (f.getValue() == null) continue;
                        params.add("queryparam_" + f.getParamName(), f.getValue());
                    }
                    setResponsePage(QueryPage.class, params);
                } catch (Exception ex) {
                    String message = ex.getClass().getName();
                    if (ex.getMessage() != null) message = ex.getMessage();
                    feedbackPanel.error(message);
                }
            }

            @Override
            protected void onValidate() {
                super.onValidate();
                for (QueryParamField f : paramFields) {
                    f.getFormComponent().processInput();
                    for (FeedbackMessage fm : f.getFormComponent().getFeedbackMessages()) {
                        form.getFeedbackMessages().add(fm);
                    }
                }
            }

        };
        form.setOutputMarkupId(true);

        WebMarkupContainer paramContainer = new WebMarkupContainer("params");

        paramFields = q.createParamFields("paramfield");
        paramContainer.add(new ListView<QueryParamField>("paramfields", paramFields) {

            protected void populateItem(ListItem<QueryParamField> item) {
                QueryParamField f = item.getModelObject();
                f.getModel().setObject(parameters.get("queryparam_" + f.getParamName()).toString());
                item.add(item.getModelObject());
            }

        });
        paramContainer.setVisible(!paramFields.isEmpty());
        form.add(paramContainer);

        // TODO Replace hard-coded Nanopub Query URL with dynamic solution:
        String editLink = q.getEndpoint().stringValue().replaceFirst("^.*/repo/", "https://query.petapico.org/tools/") + "/yasgui.html#query=" + URLEncoder.encode(q.getSparql(), Charsets.UTF_8);
        // TODO We also need to replace the nanopub-query placeholder service URLs in the query above.
        // Deactivated for now:
        form.add(new ExternalLink("yasgui", editLink).setVisible(false));

        add(form);

        feedbackPanel = new FeedbackPanel("feedback");
        feedbackPanel.setOutputMarkupId(true);
        add(feedbackPanel);

        if (queryId == null) {
            add(new Label("resulttable").setVisible(false));
        } else {
            add(QueryResultTable.createComponent("resulttable", new QueryRef(queryId, queryParams), true));
        }
    }

    /**
     * <p>hasAutoRefreshEnabled.</p>
     *
     * @return a boolean
     */
    protected boolean hasAutoRefreshEnabled() {
        return true;
    }

}

1	package com.knowledgepixels.nanodash.page;
2
3	import java.net.URLEncoder;
4	import java.util.List;
5
6	import org.apache.wicket.feedback.FeedbackMessage;
7	import org.apache.wicket.markup.html.WebMarkupContainer;
8	import org.apache.wicket.markup.html.basic.Label;
9	import org.apache.wicket.markup.html.form.Form;
10	import org.apache.wicket.markup.html.link.BookmarkablePageLink;
11	import org.apache.wicket.markup.html.link.ExternalLink;
12	import org.apache.wicket.markup.html.list.ListItem;
13	import org.apache.wicket.markup.html.list.ListView;
14	import org.apache.wicket.markup.html.panel.FeedbackPanel;
15	import org.apache.wicket.request.mapper.parameter.PageParameters;
16	import org.nanopub.extra.services.QueryRef;
17
18	import com.github.jsonldjava.shaded.com.google.common.base.Charsets;
19	import com.google.common.collect.ArrayListMultimap;
20	import com.google.common.collect.Multimap;
21	import com.knowledgepixels.nanodash.GrlcQuery;
22	import com.knowledgepixels.nanodash.component.QueryParamField;
23	import com.knowledgepixels.nanodash.component.QueryResultTable;
24	import com.knowledgepixels.nanodash.component.TitleBar;
25
26	/**
27	* Page for displaying a query and its parameters, allowing users to run the query with specified parameters.
28	*/
29	public class QueryPage extends NanodashPage {
30
31	/**
32	* The mount path for this page.
33	*/
34	public static final String MOUNT_PATH = "/query";
35
36	private final Form<Void> form;
37	private final List<QueryParamField> paramFields;
38	private final FeedbackPanel feedbackPanel;
39
40	/**
41	* {@inheritDoc}
42	*/
43	@Override
44	public String getMountPath() {
45	return MOUNT_PATH;	×
46	}
47
48	/**
49	* Constructor for the QueryPage.
50	*
51	* @param parameters The page parameters, which should include the query ID and any query parameters.
52	*/
53	public QueryPage(final PageParameters parameters) {
54	super(parameters);	×
55	add(new TitleBar("titlebar", this, null));	×
56	add(new Label("pagetitle", "Query Info \| nanodash"));	×
57
58	String id = parameters.get("id").toString();	×
59	final String queryId = parameters.get("runquery").toString();	×
60	if (id == null) id = queryId;	×
61
62	final Multimap<String, String> queryParams = ArrayListMultimap.create();	×
63	for (String paramKey : parameters.getNamedKeys()) {	×
64	if (!paramKey.startsWith("queryparam_")) continue;	×
65	queryParams.put(paramKey.replaceFirst("queryparam_", ""), parameters.get(paramKey).toString());	×
66	}	×
67
68	GrlcQuery q = GrlcQuery.get(id);	×
69
70	add(new Label("querylabel", q.getLabel()));	×
71	add(new BookmarkablePageLink<Void>("np", ExplorePage.class, new PageParameters().add("id", q.getNanopub().getUri().stringValue())));	×
72	// TODO Replace hard-coded domain with dynamic solution:
73	add(new ExternalLink("openapi-this", "https://query.knowledgepixels.com/openapi/?url=spec/" + id));	×
74	add(new ExternalLink("openapi-latest", "https://query.knowledgepixels.com/openapi/?url=spec/" + id + "%3Fapi-version=latest"));	×
75	add(new Label("querydesc", q.getDescription()));	×
76
77	form = new Form<Void>("form") {	×
78
79	@Override
80	protected void onConfigure() {
81	super.onConfigure();	×
82	form.getFeedbackMessages().clear();	×
83	}	×
84
85	@Override
86	protected void onSubmit() {
87	try {
88	PageParameters params = new PageParameters();	×
89	params.add("runquery", q.getQueryId());	×
90	for (QueryParamField f : paramFields) {	×
91	if (f.getValue() == null) continue;	×
92	params.add("queryparam_" + f.getParamName(), f.getValue());	×
93	}	×
94	setResponsePage(QueryPage.class, params);	×
95	} catch (Exception ex) {	×
96	String message = ex.getClass().getName();	×
97	if (ex.getMessage() != null) message = ex.getMessage();	×
98	feedbackPanel.error(message);	×
99	}	×
100	}	×
101
102	@Override
103	protected void onValidate() {
104	super.onValidate();	×
105	for (QueryParamField f : paramFields) {	×
106	f.getFormComponent().processInput();	×
107	for (FeedbackMessage fm : f.getFormComponent().getFeedbackMessages()) {	×
108	form.getFeedbackMessages().add(fm);	×
109	}	×
110	}	×
111	}	×
112
113	};
114	form.setOutputMarkupId(true);	×
115
116	WebMarkupContainer paramContainer = new WebMarkupContainer("params");	×
117
118	paramFields = q.createParamFields("paramfield");	×
119	paramContainer.add(new ListView<QueryParamField>("paramfields", paramFields) {	×
120
121	protected void populateItem(ListItem<QueryParamField> item) {
122	QueryParamField f = item.getModelObject();	×
123	f.getModel().setObject(parameters.get("queryparam_" + f.getParamName()).toString());	×
124	item.add(item.getModelObject());	×
125	}	×
126
127	});
128	paramContainer.setVisible(!paramFields.isEmpty());	×
129	form.add(paramContainer);	×
130
131	// TODO Replace hard-coded Nanopub Query URL with dynamic solution:
132	String editLink = q.getEndpoint().stringValue().replaceFirst("^.*/repo/", "https://query.petapico.org/tools/") + "/yasgui.html#query=" + URLEncoder.encode(q.getSparql(), Charsets.UTF_8);	×
133	// TODO We also need to replace the nanopub-query placeholder service URLs in the query above.
134	// Deactivated for now:
135	form.add(new ExternalLink("yasgui", editLink).setVisible(false));	×
136
137	add(form);	×
138
139	feedbackPanel = new FeedbackPanel("feedback");	×
140	feedbackPanel.setOutputMarkupId(true);	×
141	add(feedbackPanel);	×
142
143	if (queryId == null) {	×
144	add(new Label("resulttable").setVisible(false));	×
145	} else {
146	add(QueryResultTable.createComponent("resulttable", new QueryRef(queryId, queryParams), true));	×
147	}
148	}	×
149
150	/**
151	* <p>hasAutoRefreshEnabled.</p>
152	*
153	* @return a boolean
154	*/
155	protected boolean hasAutoRefreshEnabled() {
156	return true;	×
157	}
158
159	}

knowledgepixels / nanodash / 17852532121

Source File Press 'n' to go to next uncovered line, 'b' for previous

Source File
Press 'n' to go to next uncovered line, 'b' for previous