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knowledgepixels / nanopub-query / 17795838363

17 Sep 2025 11:17AM UTC coverage: 70.444% (-1.0%) from 71.466%
17795838363

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github

tkuhn
feat: Cover multi placeholders in OpenAPI spec

206 of 318 branches covered (64.78%)

Branch coverage included in aggregate %.

571 of 785 relevant lines covered (72.74%)

3.65 hits per line

Source File
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0.0
src/main/java/com/knowledgepixels/query/MainVerticle.java
1
package com.knowledgepixels.query;
2

3
import java.io.InputStream;
4
import java.net.URLEncoder;
5
import java.util.ArrayList;
6
import java.util.Collections;
7
import java.util.List;
8
import java.util.Map.Entry;
9
import java.util.Scanner;
10
import java.util.concurrent.Executors;
11
import java.util.concurrent.TimeUnit;
12

13
import org.eclipse.rdf4j.model.Value;
14

15
import com.github.jsonldjava.shaded.com.google.common.base.Charsets;
16
import com.knowledgepixels.query.GrlcSpec.InvalidGrlcSpecException;
17

18
import io.micrometer.prometheus.PrometheusMeterRegistry;
19
import io.vertx.core.AbstractVerticle;
20
import io.vertx.core.Future;
21
import io.vertx.core.MultiMap;
22
import io.vertx.core.Promise;
23
import io.vertx.core.buffer.Buffer;
24
import io.vertx.core.http.HttpClient;
25
import io.vertx.core.http.HttpClientOptions;
26
import io.vertx.core.http.HttpMethod;
27
import io.vertx.core.http.HttpServer;
28
import io.vertx.core.http.HttpServerResponse;
29
import io.vertx.core.http.PoolOptions;
30
import io.vertx.ext.web.Router;
31
import io.vertx.ext.web.RoutingContext;
32
import io.vertx.ext.web.handler.CorsHandler;
33
import io.vertx.ext.web.handler.StaticHandler;
34
import io.vertx.ext.web.proxy.handler.ProxyHandler;
35
import io.vertx.httpproxy.Body;
36
import io.vertx.httpproxy.HttpProxy;
37
import io.vertx.httpproxy.ProxyContext;
38
import io.vertx.httpproxy.ProxyInterceptor;
39
import io.vertx.httpproxy.ProxyRequest;
40
import io.vertx.httpproxy.ProxyResponse;
41
import io.vertx.micrometer.PrometheusScrapingHandler;
42
import io.vertx.micrometer.backends.BackendRegistries;
43
import org.slf4j.Logger;
44
import org.slf4j.LoggerFactory;
45

46

47
// TODO merge this class with GrlcQuery of Nanodash and move to a library like nanopub-java
48
/**
49
 * Main verticle that coordinates the incoming HTTP requests.
50
 */
51
@GeneratedFlagForDependentElements
52
public class MainVerticle extends AbstractVerticle {
53

54
    private static String css = null;
55

56
    private static final Logger log = LoggerFactory.getLogger(MainVerticle.class);
57

58
    /**
59
     * Start the main verticle.
60
     *
61
     * @param startPromise the promise to complete when the verticle is started
62
     * @throws Exception if an error occurs during startup
63
     */
64
    @Override
65
    public void start(Promise<Void> startPromise) throws Exception {
66
        HttpClient httpClient = vertx.createHttpClient(
67
                new HttpClientOptions()
68
                        .setConnectTimeout(Utils.getEnvInt("NANOPUB_QUERY_VERTX_CONNECT_TIMEOUT", 1000))
69
                        .setIdleTimeoutUnit(TimeUnit.SECONDS)
70
                        .setIdleTimeout(Utils.getEnvInt("NANOPUB_QUERY_VERTX_IDLE_TIMEOUT", 60))
71
                        .setReadIdleTimeout(Utils.getEnvInt("NANOPUB_QUERY_VERTX_IDLE_TIMEOUT", 60))
72
                        .setWriteIdleTimeout(Utils.getEnvInt("NANOPUB_QUERY_VERTX_IDLE_TIMEOUT", 60)),
73
                new PoolOptions().setHttp1MaxSize(200).setHttp2MaxSize(200)
74
        );
75

76
        HttpServer proxyServer = vertx.createHttpServer();
77
        Router proxyRouter = Router.router(vertx);
78
        proxyRouter.route().handler(CorsHandler.create().addRelativeOrigin(".*"));
79

80
        // Metrics
81
        final var metricsHttpServer = vertx.createHttpServer();
82
        final var metricsRouter = Router.router(vertx);
83
        metricsHttpServer.requestHandler(metricsRouter).listen(9394);
84

85
        final var metricsRegistry = (PrometheusMeterRegistry) BackendRegistries.getDefaultNow();
86
        final var collector = new MetricsCollector(metricsRegistry);
87
        metricsRouter.route("/metrics").handler(PrometheusScrapingHandler.create(metricsRegistry));
88
        // ----------
89
        // This part is only used if the redirection is not done through Nginx.
90
        // See nginx.conf and this bug report: https://github.com/eclipse-rdf4j/rdf4j/discussions/5120
91
        HttpProxy rdf4jProxy = HttpProxy.reverseProxy(httpClient);
92
        String proxy = Utils.getEnvString("RDF4J_PROXY_HOST", "rdf4j");
93
        int proxyPort = Utils.getEnvInt("RDF4J_PROXY_PORT", 8080);
94
        rdf4jProxy.origin(proxyPort, proxy);
95

96
        rdf4jProxy.addInterceptor(new ProxyInterceptor() {
×
97

98
            @Override
99
            @GeneratedFlagForDependentElements
100
            public Future<ProxyResponse> handleProxyRequest(ProxyContext context) {
101
                ProxyRequest request = context.request();
102
                request.setURI(request.getURI().replaceAll("/", "_").replaceFirst("^_repo_", "/rdf4j-server/repositories/"));
103
                // For later to try to get HTML tables out:
104
//                                if (request.headers().get("Accept") == null) {
105
//                                        request.putHeader("Accept", "text/html");
106
//                                }
107
//                                request.putHeader("Accept", "application/json");
108
                return ProxyInterceptor.super.handleProxyRequest(context);
109
            }
110

111
            @Override
112
            @GeneratedFlagForDependentElements
113
            public Future<Void> handleProxyResponse(ProxyContext context) {
114
                ProxyResponse resp = context.response();
115
                resp.putHeader("Access-Control-Allow-Origin", "*");
116
                resp.putHeader("Access-Control-Allow-Methods", "POST, GET, OPTIONS");
117
                // For later to try to get HTML tables out:
118
//                                String acceptHeader = context.request().headers().get("Accept");
119
//                                if (acceptHeader != null && acceptHeader.contains("text/html")) {
120
//                                        resp.putHeader("Content-Type", "text/html");
121
//                                        resp.setBody(Body.body(Buffer.buffer("<html><body><strong>test</strong></body></html>")));
122
//                                }
123
                return ProxyInterceptor.super.handleProxyResponse(context);
124
            }
125

126
        });
127
        // ----------
128

129
        proxyRouter.route(HttpMethod.GET, "/repo").handler(req -> handleRedirect(req, "/repo"));
130
        proxyRouter.route(HttpMethod.GET, "/repo/*").handler(ProxyHandler.create(rdf4jProxy));
131
        proxyRouter.route(HttpMethod.POST, "/repo/*").handler(ProxyHandler.create(rdf4jProxy));
132
        proxyRouter.route(HttpMethod.HEAD, "/repo/*").handler(ProxyHandler.create(rdf4jProxy));
133
        proxyRouter.route(HttpMethod.OPTIONS, "/repo/*").handler(ProxyHandler.create(rdf4jProxy));
134
        proxyRouter.route(HttpMethod.GET, "/tools/*").handler(req -> {
135
            final String yasguiPattern = "^/tools/([a-zA-Z0-9-_]+)(/([a-zA-Z0-9-_]+))?/yasgui\\.html$";
136
            if (req.normalizedPath().matches(yasguiPattern)) {
137
                String repo = req.normalizedPath().replaceFirst(yasguiPattern, "$1$2");
138
                req.response()
139
                        .putHeader("content-type", "text/html")
140
                        .end("<!DOCTYPE html>\n"
141
                                + "<html lang=\"en\">\n"
142
                                + "<head>\n"
143
                                + "<meta charset=\"utf-8\">\n"
144
                                + "<meta http-equiv=\"X-UA-Compatible\" content=\"IE=edge\">\n"
145
                                + "<meta name=\"viewport\" content=\"width=device-width, initial-scale=1\">\n"
146
                                + "<title>Nanopub Query SPARQL Editor for repository: " + repo + "</title>\n"
147
                                + "<link rel=\"stylesheet\" href=\"/style.css\">\n"
148
                                + "<link href='https://cdn.jsdelivr.net/yasgui/2.6.1/yasgui.min.css' rel='stylesheet' type='text/css'/>\n"
149
                                + "<style>.yasgui .endpointText {display:none !important;}</style>\n"
150
                                + "<script type=\"text/javascript\">localStorage.clear();</script>\n"
151
                                + "</head>\n"
152
                                + "<body>\n"
153
                                + "<h3>Nanopub Query SPARQL Editor for repository: " + repo + "</h3>\n"
154
                                + "<div id='yasgui'></div>\n"
155
                                + "<script src='https://cdn.jsdelivr.net/yasgui/2.6.1/yasgui.min.js'></script>\n"
156
                                + "<script type=\"text/javascript\">\n"
157
                                + "var yasgui = YASGUI(document.getElementById(\"yasgui\"), {\n"
158
                                + "  yasqe:{sparql:{endpoint:'/repo/" + repo + "'},value:'" + Utils.defaultQuery.replaceAll("\n", "\\\\n") + "'}\n"
159
                                + "});\n"
160
                                + "</script>\n"
161
                                + "</body>\n"
162
                                + "</html>");
163
            } else {
164
                req.response()
165
                        .putHeader("content-type", "text/plain")
166
                        .setStatusCode(404)
167
                        .end("not found");
168
            }
169
        });
170
        proxyRouter.route(HttpMethod.GET, "/page").handler(req -> handleRedirect(req, "/page"));
171
        proxyRouter.route(HttpMethod.GET, "/page/*").handler(req -> {
172
            final String pagePattern = "^/page/([a-zA-Z0-9-_]+)(/([a-zA-Z0-9-_]+))?$";
173
            if (req.normalizedPath().matches(pagePattern)) {
174
                String repo = req.normalizedPath().replaceFirst(pagePattern, "$1$2");
175
                req.response()
176
                        .putHeader("content-type", "text/html")
177
                        .end("<!DOCTYPE html>\n"
178
                                + "<html lang=\"en\">\n"
179
                                + "<head>\n"
180
                                + "<meta charset=\"utf-8\">\n"
181
                                + "<meta http-equiv=\"X-UA-Compatible\" content=\"IE=edge\">\n"
182
                                + "<meta name=\"viewport\" content=\"width=device-width, initial-scale=1\">\n"
183
                                + "<title>Nanopub Query repo: " + repo + "</title>\n"
184
                                + "<link rel=\"stylesheet\" href=\"/style.css\">\n"
185
                                + "</head>\n"
186
                                + "<body>\n"
187
                                + "<h3>Nanopub Query repo: " + repo + "</h3>\n"
188
                                + "<p>Endpoint: <a href=\"/repo/" + repo + "\">/repo/" + repo + "</a></p>"
189
                                + "<p>YASGUI: <a href=\"/tools/" + repo + "/yasgui.html\">/tools/" + repo + "/yasgui.hml</a></p>"
190
                                + "</body>\n"
191
                                + "</html>");
192
            } else {
193
                req.response()
194
                        .putHeader("content-type", "text/plain")
195
                        .setStatusCode(404)
196
                        .end("not found");
197
            }
198
        });
199
        proxyRouter.route(HttpMethod.GET, "/").handler(req -> {
200
            String repos = "";
201
            List<String> repoList = new ArrayList<>(TripleStore.get().getRepositoryNames());
202
            Collections.sort(repoList);
203
            for (String s : repoList) {
204
                if (s.startsWith("pubkey_") || s.startsWith("type_")) continue;
205
                repos += "<li><code><a href=\"/page/" + s + "\">" + s + "</a></code></li>";
206
            }
207
            String pinnedApisValue = Utils.getEnvString("NANOPUB_QUERY_PINNED_APIS", "");
208
            String[] pinnedApis = pinnedApisValue.split(" ");
209
            String pinnedApiLinks = "";
210
            if (!pinnedApisValue.isEmpty()) {
211
                for (String s : pinnedApis) {
212
                    pinnedApiLinks = pinnedApiLinks + "<li><a href=\"openapi/?url=spec/" + s + "%3Fapi-version=latest\">" + s.replaceFirst("^.*/", "") + "</a></li>";
213
                }
214
                pinnedApiLinks = "<p>Pinned APIs:</p>\n" +
215
                        "<ul>\n" +
216
                        pinnedApiLinks +
217
                        "</ul>\n";
218
            }
219
            req.response()
220
                    .putHeader("content-type", "text/html")
221
                    .end("<!DOCTYPE html>\n"
222
                            + "<html lang='en'>\n"
223
                            + "<head>\n"
224
                            + "<title>Nanopub Query</title>\n"
225
                            + "<meta charset='utf-8'>\n"
226
                            + "<link rel=\"stylesheet\" href=\"/style.css\">\n"
227
                            + "</head>\n"
228
                            + "<body>\n"
229
                            + "<h1>Nanopub Query</h1>"
230
                            + "<p>General repos:</p>"
231
                            + "<ul>" + repos + "</ul>"
232
                            + "<p>Specific repos:</p>"
233
                            + "<ul>"
234
                            + "<li><a href=\"/pubkeys\">Pubkey Repos</a></li>"
235
                            + "<li><a href=\"/types\">Type Repos</a></li>"
236
                            + "</ul>"
237
                            + pinnedApiLinks
238
                            + "</body>\n"
239
                            + "</html>");
240
        });
241
        proxyRouter.route(HttpMethod.GET, "/pubkeys").handler(req -> {
242
            String repos = "";
243
            List<String> repoList = new ArrayList<>(TripleStore.get().getRepositoryNames());
244
            Collections.sort(repoList);
245
            for (String s : repoList) {
246
                if (!s.startsWith("pubkey_")) continue;
247
                String hash = s.replaceFirst("^([a-zA-Z0-9-]+)_([a-zA-Z0-9-_]+)$", "$2");
248
                Value hashObj = Utils.getObjectForHash(hash);
249
                String label;
250
                if (hashObj == null) {
251
                    label = "";
252
                } else {
253
                    label = " (" + Utils.getShortPubkeyName(hashObj.stringValue()) + ")";
254
                }
255
                s = s.replaceFirst("^([a-zA-Z0-9-]+)_([a-zA-Z0-9-_]+)$", "$1/$2");
256
                repos += "<li><code><a href=\"/page/" + s + "\">" + s + "</a>" + label + "</code></li>";
257
            }
258
            req.response()
259
                    .putHeader("content-type", "text/html")
260
                    .end("<!DOCTYPE html>\n"
261
                            + "<html lang='en'>\n"
262
                            + "<head>\n"
263
                            + "<title>Nanopub Query: Pubkey Repos</title>\n"
264
                            + "<meta charset='utf-8'>\n"
265
                            + "<link rel=\"stylesheet\" href=\"/style.css\">\n"
266
                            + "</head>\n"
267
                            + "<body>\n"
268
                            + "<h3>Pubkey Repos</h3>"
269
                            + "<p>Repos:</p>"
270
                            + "<ul>" + repos + "</ul>"
271
                            + "</body>\n"
272
                            + "</html>");
273
        });
274
        proxyRouter.route(HttpMethod.GET, "/types").handler(req -> {
275
            String repos = "";
276
            List<String> repoList = new ArrayList<>(TripleStore.get().getRepositoryNames());
277
            Collections.sort(repoList);
278
            for (String s : repoList) {
279
                if (!s.startsWith("type_")) continue;
280
                String hash = s.replaceFirst("^([a-zA-Z0-9-]+)_([a-zA-Z0-9-_]+)$", "$2");
281
                Value hashObj = Utils.getObjectForHash(hash);
282
                String label;
283
                if (hashObj == null) {
284
                    label = "";
285
                } else {
286
                    label = " (" + hashObj.stringValue() + ")";
287
                }
288
                s = s.replaceFirst("^([a-zA-Z0-9-]+)_([a-zA-Z0-9-_]+)$", "$1/$2");
289
                repos += "<li><code><a href=\"/page/" + s + "\">" + s + "</a>" + label + "</code></li>";
290
            }
291
            req.response()
292
                    .putHeader("content-type", "text/html")
293
                    .end("<!DOCTYPE html>\n"
294
                            + "<html lang='en'>\n"
295
                            + "<head>\n"
296
                            + "<title>Nanopub Query: Type Repos</title>\n"
297
                            + "<meta charset='utf-8'>\n"
298
                            + "<link rel=\"stylesheet\" href=\"/style.css\">\n"
299
                            + "</head>\n"
300
                            + "<body>\n"
301
                            + "<h3>Type Repos</h3>"
302
                            + "<p>Repos:</p>"
303
                            + "<ul>" + repos + "</ul>"
304
                            + "</body>\n"
305
                            + "</html>");
306
        });
307
        proxyRouter.route(HttpMethod.GET, "/style.css").handler(req -> {
308
            if (css == null) {
309
                css = getResourceAsString("style.css");
310
            }
311
            req.response().end(css);
312
        });
313

314
        proxyRouter.route(HttpMethod.GET, "/grlc-spec/*").handler(req -> {
315
            try {
316
                GrlcSpec gsp = new GrlcSpec(req.normalizedPath(), req.queryParams());
317
                req.response().putHeader("content-type", "text/yaml").end(gsp.getSpec());
318
            } catch (InvalidGrlcSpecException ex) {
319
                req.response().setStatusCode(400).end(ex.getMessage());
320
            } catch (Exception ex) {
321
                req.response().setStatusCode(500).end("Unexpected error: " + ex.getMessage());
322
            }
323
        });
324

325
        proxyRouter.route(HttpMethod.GET, "/openapi/spec/*").handler(req -> {
326
            try {
327
                OpenApiSpecPage osp = new OpenApiSpecPage(req.normalizedPath(), req.queryParams());
328
                req.response().putHeader("content-type", "text/yaml").end(osp.getSpec());
329
            } catch (InvalidGrlcSpecException ex) {
330
                req.response().setStatusCode(400).end("Invlid grlc API definition: " + ex.getMessage());
331
            } catch (Exception ex) {
332
                req.response().setStatusCode(500).end("Unexpected error: " + ex.getMessage());
333
            }
334
        });
335

336
        proxyRouter.route("/openapi/*").handler(StaticHandler.create("com/knowledgepixels/query/swagger"));
337

338
        HttpProxy grlcProxy = HttpProxy.reverseProxy(httpClient);
339
        grlcProxy.origin(80, "grlc");
340
        grlcProxy.addInterceptor(new ProxyInterceptor() {
×
341

342
            @Override
343
            @GeneratedFlagForDependentElements
344
            public Future<ProxyResponse> handleProxyRequest(ProxyContext context) {
345
                final String apiPattern = "^/api/(RA[a-zA-Z0-9-_]{43})/([a-zA-Z0-9-_]+)([?].*)?$";
346
                if (context.request().getURI().matches(apiPattern)) {
347
                    String artifactCode = context.request().getURI().replaceFirst(apiPattern, "$1");
348
                    String queryName = context.request().getURI().replaceFirst(apiPattern, "$2");
349
                    String grlcUrlParams = "";
350
                    String grlcSpecUrlParams = "";
351
                    MultiMap pm = context.request().proxiedRequest().params();
352
                    for (Entry<String, String> e : pm) {
353
                        if (e.getKey().equals("api-version")) {
354
                            grlcSpecUrlParams += "&" + e.getKey() + "=" + URLEncoder.encode(e.getValue(), Charsets.UTF_8);
355
                        } else {
356
                            grlcUrlParams += "&" + e.getKey() + "=" + URLEncoder.encode(e.getValue(), Charsets.UTF_8);
357
                        }
358
                    }
359
                    String url = "/api-url/" + queryName +
360
                            "?specUrl=" + URLEncoder.encode(GrlcSpec.nanopubQueryUrl + "grlc-spec/" + artifactCode + "/?" +
361
                            grlcSpecUrlParams, Charsets.UTF_8) + grlcUrlParams;
362
                    context.request().setURI(url);
363
                }
364
                return context.sendRequest();
365
            }
366

367
            @Override
368
            @GeneratedFlagForDependentElements
369
            public Future<Void> handleProxyResponse(ProxyContext context) {
370
                // To avoid double entries:
371
                context.response().headers().remove("Access-Control-Allow-Origin");
372
                return context.sendResponse();
373
            }
374

375
        });
376

377
        HttpProxy grlcxProxy = HttpProxy.reverseProxy(httpClient);
378
        grlcxProxy.origin(proxyPort, proxy);
379

380
        grlcxProxy.addInterceptor(new ProxyInterceptor() {
×
381

382
            @Override
383
            @GeneratedFlagForDependentElements
384
            public Future<ProxyResponse> handleProxyRequest(ProxyContext context) {
385
                final ProxyRequest req = context.request();
386
                final String apiPattern = "^/apix/(RA[a-zA-Z0-9-_]{43})/([a-zA-Z0-9-_]+)([?].*)?$";
387
                if (req.getURI().matches(apiPattern)) {
388
                    try {
389
                        GrlcSpec grlcSpec = new GrlcSpec(req.getURI(), req.proxiedRequest().params());
390
                        req.setMethod(HttpMethod.POST);
391
    
392
                        // Variant 1:
393
                        req.putHeader("Content-Type", "application/sparql-query");
394
                        req.setBody(Body.body(Buffer.buffer(grlcSpec.expandQuery())));
395
                        // Variant 2:
396
                        //req.putHeader("Content-Type", "application/x-www-form-urlencoded");
397
                        //req.setBody(Body.body(Buffer.buffer("query=" + URLEncoder.encode(grlcSpec.getExpandedQueryContent(), Charsets.UTF_8))));
398
    
399
                        req.setURI("/rdf4j-server/repositories/" + grlcSpec.getRepoName());
400
                        log.info("Forwarding apix request to /rdf4j-server/repositories/", grlcSpec.getRepoName());
401
                    } catch (InvalidGrlcSpecException ex) {
402
                        return Future.succeededFuture(context.request()
403
                                .response()
404
                                .setStatusCode(400)
405
                                .putHeader("Content-Type", "text/plain")
406
                                .setBody(Body.body(Buffer.buffer("Bad request: " + ex.getMessage()))));
407
                    } catch (Exception ex) {
408
                        return Future.succeededFuture(context.request()
409
                                .response()
410
                                .setStatusCode(500)
411
                                .putHeader("Content-Type", "text/plain")
412
                                .setBody(Body.body(Buffer.buffer("Unexpected error: " + ex.getMessage()))));
413
                    }
414
                }
415
                return ProxyInterceptor.super.handleProxyRequest(context);
416
            }
417

418
            @Override
419
            @GeneratedFlagForDependentElements
420
            public Future<Void> handleProxyResponse(ProxyContext context) {
421
                log.info("Receiving apix response");
422
                ProxyResponse resp = context.response();
423
                resp.putHeader("Access-Control-Allow-Origin", "*");
424
                resp.putHeader("Access-Control-Allow-Methods", "POST, GET, OPTIONS");
425
                return ProxyInterceptor.super.handleProxyResponse(context);
426
            }
427

428
        });
429
        proxyRouter.route(HttpMethod.GET, "/apix/*").handler(ProxyHandler.create(grlcxProxy));
430

431
        proxyServer.requestHandler(req -> {
432
            applyGlobalHeaders(req.response());
433
            proxyRouter.handle(req);
434
        });
435
        proxyServer.listen(9393);
436

437
        proxyRouter.route("/api/*").handler(ProxyHandler.create(grlcProxy));
438
        proxyRouter.route("/static/*").handler(ProxyHandler.create(grlcProxy));
439

440
        // Periodic metrics update
441
        vertx.setPeriodic(1000, id -> collector.updateMetrics());
442

443

444
        new Thread(() -> {
445
            try {
446
                var status = StatusController.get().initialize();
447
                log.info("Current state: {}, last committed counter: {}", status.state, status.loadCounter);
448
                if (status.state == StatusController.State.LAUNCHING || status.state == StatusController.State.LOADING_INITIAL) {
449
                    // Do the initial nanopublication loading
450
                    StatusController.get().setLoadingInitial(status.loadCounter);
451
                    // Fall back to local nanopub loading if the local files are present
452
                    if (!LocalNanopubLoader.init()) {
453
                        JellyNanopubLoader.loadInitial(status.loadCounter);
454
                    } else {
455
                        log.info("Local nanopublication loading finished");
456
                    }
457
                    StatusController.get().setReady();
458
                } else {
459
                    log.info("Initial load is already done");
460
                    StatusController.get().setReady();
461
                }
462
            } catch (Exception ex) {
463
                log.info("Initial load failed, terminating...", ex);
464
                Runtime.getRuntime().exit(1);
465
            }
466

467
            // Start periodic nanopub loading
468
            log.info("Starting periodic nanopub loading...");
469
            var executor = Executors.newSingleThreadScheduledExecutor();
470
            executor.scheduleWithFixedDelay(
471
                    JellyNanopubLoader::loadUpdates,
472
                    JellyNanopubLoader.UPDATES_POLL_INTERVAL,
473
                    JellyNanopubLoader.UPDATES_POLL_INTERVAL,
474
                    TimeUnit.MILLISECONDS
475
            );
476
        }).start();
477

478
        Runtime.getRuntime().addShutdownHook(new Thread(() -> {
479
            try {
480
                log.info("Gracefully shutting down...");
481
                TripleStore.get().shutdownRepositories();
482
                vertx.close().toCompletionStage().toCompletableFuture().get(5, TimeUnit.SECONDS);
483
                log.info("Graceful shutdown completed");
484
            } catch (Exception ex) {
485
                log.info("Graceful shutdown failed", ex);
486
            }
487
        }));
488
    }
489

490
    private String getResourceAsString(String file) {
491
        InputStream is = getClass().getClassLoader().getResourceAsStream("com/knowledgepixels/query/" + file);
492
        try (Scanner s = new Scanner(is).useDelimiter("\\A")) {
493
            String fileContent = s.hasNext() ? s.next() : "";
494
            return fileContent;
495
        }
496
    }
497

498
    private static void handleRedirect(RoutingContext req, String path) {
499
        String queryString = "";
500
        if (!req.queryParam("query").isEmpty())
501
            queryString = "?query=" + URLEncoder.encode(req.queryParam("query").get(0), Charsets.UTF_8);
502
        if (req.queryParam("for-type").size() == 1) {
503
            String type = req.queryParam("for-type").get(0);
504
            req.response().putHeader("location", path + "/type/" + Utils.createHash(type) + queryString);
505
            req.response().setStatusCode(301).end();
506
        } else if (req.queryParam("for-pubkey").size() == 1) {
507
            String type = req.queryParam("for-pubkey").get(0);
508
            req.response().putHeader("location", path + "/pubkey/" + Utils.createHash(type) + queryString);
509
            req.response().setStatusCode(301).end();
510
        } else if (req.queryParam("for-user").size() == 1) {
511
            String type = req.queryParam("for-user").get(0);
512
            req.response().putHeader("location", path + "/user/" + Utils.createHash(type) + queryString);
513
            req.response().setStatusCode(301).end();
514
        }
515
    }
516

517
    /**
518
     * Apply headers to the response that should be present for all requests.
519
     *
520
     * @param response The response to which the headers should be applied.
521
     */
522
    private static void applyGlobalHeaders(HttpServerResponse response) {
523
        response.putHeader("Nanopub-Query-Status", StatusController.get().getState().state.toString());
524
    }
525
}
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