17760079101

Committed 16 Sep 2025 08:42AM UTC coverage: 13.879% (+0.08%) from 13.799%

Build # 17760079101

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push

github

Committed by

ashleycaselli

Commit Message

refactor: replace hardcoded local URI prefix with LocalUri constant and checks with Utils methods

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src/main/java/com/knowledgepixels/nanodash/component/ReadonlyItem.java

package com.knowledgepixels.nanodash.component;

import com.knowledgepixels.nanodash.LocalUri;
import com.knowledgepixels.nanodash.RestrictedChoice;
import com.knowledgepixels.nanodash.User;
import com.knowledgepixels.nanodash.Utils;
import com.knowledgepixels.nanodash.component.StatementItem.RepetitionGroup;
import com.knowledgepixels.nanodash.page.ExplorePage;
import com.knowledgepixels.nanodash.page.UserPage;
import com.knowledgepixels.nanodash.template.ContextType;
import com.knowledgepixels.nanodash.template.Template;
import com.knowledgepixels.nanodash.template.TemplateContext;
import com.knowledgepixels.nanodash.template.UnificationException;
import net.trustyuri.TrustyUriUtils;
import org.apache.commons.codec.Charsets;
import org.apache.wicket.behavior.AttributeAppender;
import org.apache.wicket.markup.html.basic.Label;
import org.apache.wicket.markup.html.link.ExternalLink;
import org.apache.wicket.markup.html.panel.Panel;
import org.apache.wicket.model.IModel;
import org.apache.wicket.model.Model;
import org.apache.wicket.validation.IValidatable;
import org.apache.wicket.validation.IValidator;
import org.apache.wicket.validation.Validatable;
import org.apache.wicket.validation.ValidationError;
import org.eclipse.rdf4j.common.net.ParsedIRI;
import org.eclipse.rdf4j.model.IRI;
import org.eclipse.rdf4j.model.Literal;
import org.eclipse.rdf4j.model.Value;
import org.eclipse.rdf4j.model.ValueFactory;
import org.eclipse.rdf4j.model.impl.SimpleValueFactory;
import org.eclipse.rdf4j.model.util.Literals;
import org.eclipse.rdf4j.model.vocabulary.XSD;
import org.nanopub.Nanopub;
import org.nanopub.SimpleCreatorPattern;
import org.nanopub.vocabulary.NTEMPLATE;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

import java.net.URISyntaxException;
import java.net.URLEncoder;
import java.util.HashMap;
import java.util.Map;

/**
 * ReadonlyItem is a component that displays a read-only item in the form.
 */
public class ReadonlyItem extends Panel implements ContextComponent {

    // TODO: Make ContextComponent an abstract class with superclass Panel, and move the common code of the form items there.

    private static final long serialVersionUID = 1L;
    private static final int LONG_LITERAL_LENGTH = 100;
    private static final Logger logger = LoggerFactory.getLogger(ReadonlyItem.class);
    private static final ValueFactory vf = SimpleValueFactory.getInstance();

    private IModel<String> model;
    private TemplateContext context;
    private String prefix;
    private ExternalLink linkComp;
    private Label extraComp, languageComp, datatypeComp;
    private IModel<String> extraModel, languageModel, datatypeModel;
    private IRI iri;
    private RestrictedChoice restrictedChoice;
    private Label showMoreLabelLiteral, showMoreLabelHTML;
    private final Template template;

    /**
     * Constructor for ReadonlyItem.
     *
     * @param id              the component id
     * @param parentId        the parent id (e.g., "subj", "obj")
     * @param iriP            the IRI of the item
     * @param objectPosition  whether this is an object position
     * @param statementPartId the statement part ID
     * @param rg              the repetition group
     */
    public ReadonlyItem(String id, String parentId, final IRI iriP, boolean objectPosition, IRI statementPartId, final RepetitionGroup rg) {
        super(id);
        context = rg.getContext();
        this.iri = iriP;
        template = context.getTemplate();
        model = context.getComponentModels().get(iri);
        if (model == null) {
            model = Model.of("");
            context.getComponentModels().put(iri, model);
        }
        String postfix = Utils.getUriPostfix(iri);
        if (context.hasParam(postfix)) {
            model.setObject(context.getParam(postfix));
        }

        final Map<String, String> foafNameMap;
        if (context.getExistingNanopub() == null) {
            foafNameMap = new HashMap<>();
        } else {
            foafNameMap = Utils.getFoafNameMap(context.getExistingNanopub());
        }

        prefix = template.getPrefix(iri);
        if (prefix == null) prefix = "";
        if (template.isRestrictedChoicePlaceholder(iri)) {
            restrictedChoice = new RestrictedChoice(iri, context);
        }
        add(new Label("prefix", new Model<String>() {

            private static final long serialVersionUID = 1L;

            @Override
            public String getObject() {
                String prefixLabel = template.getPrefixLabel(iri);
                String v = getFullValue();
                if (prefixLabel == null || User.isUser(v) || foafNameMap.containsKey(v)) {
                    return "";
                } else {
                    if (!prefixLabel.isEmpty() && parentId.equals("subj") && !prefixLabel.matches("https?://.*")) {
                        // Capitalize first letter of label if at subject position:
                        prefixLabel = prefixLabel.substring(0, 1).toUpperCase() + prefixLabel.substring(1);
                    }
                    return prefixLabel;
                }
            }

        }));

        linkComp = new ExternalLink("link", new Model<String>() {

            private static final long serialVersionUID = 1L;

            @Override
            public String getObject() {
                String obj = getFullValue();
                if (obj == null) return "";
                if (obj.equals(LocalUri.PREFIX + "nanopub")) {
                    if (context.getExistingNanopub() != null) {
                        obj = context.getExistingNanopub().getUri().stringValue();
                        return ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);
                    } else {
                        return "";
                    }
                } else if (obj.equals(LocalUri.PREFIX + "assertion")) {
                    if (context.getExistingNanopub() != null) {
                        obj = context.getExistingNanopub().getAssertionUri().stringValue();
                        return ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);
                    } else {
                        return "";
                    }
                } else if (User.isUser(obj)) {
                    return UserPage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);
                } else if (obj.matches("https?://.+")) {
                    return ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);
                } else {
                    return "";
                }
            }

        }, new Model<String>() {

            private static final long serialVersionUID = 1L;

            @Override
            public String getObject() {
                String obj = getFullValue();
                if (obj != null && obj.matches("https?://.+")) {
                    IRI objIri = vf.createIRI(obj);
                    if (iri.equals(NTEMPLATE.CREATOR_PLACEHOLDER)) {
                        if (objectPosition) {
                            return "me (" + User.getShortDisplayName(objIri) + ")";
                        } else {
                            return "I (" + User.getShortDisplayName(objIri) + ")";
                        }
                    } else if (isAssertionValue(objIri)) {
                        if (context.getType() == ContextType.ASSERTION) {
                            return "this assertion";
                        } else {
                            return "the assertion above";
                        }
                    } else if (isNanopubValue(objIri)) {
                        return "this nanopublication";
                    } else if (User.isUser(obj)) {
                        return User.getShortDisplayName(objIri);
                    } else if (foafNameMap.containsKey(obj)) {
                        return foafNameMap.get(obj);
                    }
                    return getLabelString(objIri);
                }
                return obj;
            }

        });
        if (template.isIntroducedResource(iri) || template.isEmbeddedResource(iri)) {
            linkComp.add(AttributeAppender.append("class", "introduced"));
        }
        add(linkComp);
        add(new Label("description", new Model<String>() {

            private static final long serialVersionUID = 1L;

            @Override
            public String getObject() {
                String obj = getFullValue();
                if (obj != null && obj.matches("https?://.+")) {
                    IRI objIri = vf.createIRI(obj);
                    if (isAssertionValue(objIri)) {
                        return "This is the identifier for the assertion of this nanopublication.";
                    } else if (isNanopubValue(objIri)) {
                        return "This is the identifier for this whole nanopublication.";
                    } else if (context.isReadOnly() && obj.startsWith(context.getExistingNanopub().getUri().stringValue())) {
                        return "This is a local identifier minted within the nanopublication.";
                    }
                    String labelString = getLabelString(objIri);
                    String description = "";
                    if (labelString.contains(" - ")) description = labelString.replaceFirst("^.* - ", "");
                    return description;
                } else if (obj != null && obj.startsWith("\"")) {
                    return "(this is a literal)";
                }
                return "";
            }

        }));
        Model<String> uriModel = new Model<String>() {

            private static final long serialVersionUID = 1L;

            @Override
            public String getObject() {
                String obj = getFullValue();
                if (obj != null && obj.startsWith("\"")) return "";
                if (isAssertionValue(obj)) {
                    return getAssertionValue();
                } else if (isNanopubValue(obj)) {
                    return getNanopubValue();
                }
                return obj;
            }

        };
        add(Utils.getUriLink("uri", uriModel));
        extraModel = Model.of("");
        extraComp = new Label("extra", extraModel);
        extraComp.setVisible(false);
        add(extraComp);
        languageModel = Model.of("");
        languageComp = new Label("language", languageModel);
        languageComp.setVisible(false);
        add(languageComp);
        datatypeModel = Model.of("");
        datatypeComp = new Label("datatype", datatypeModel);
        datatypeComp.setVisible(false);
        add(datatypeComp);

        showMoreLabelLiteral = new Label("show-more-literal", "");
        add(showMoreLabelLiteral);
        showMoreLabelLiteral.setVisible(false);

        showMoreLabelHTML = new Label("show-more-html", "");
        add(showMoreLabelHTML);
        showMoreLabelHTML.setVisible(false);
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public void fillFinished() {
        String obj = getFullValue();
        if (obj != null) {
            if (isAssertionValue(obj)) {
                linkComp.add(new AttributeAppender("class", "this-assertion"));
            } else if (isNanopubValue(obj)) {
                linkComp.add(new AttributeAppender("class", "this-nanopub"));
            } else if (context.getExistingNanopub() != null) {
                Nanopub np = context.getExistingNanopub();
                if (Utils.getIntroducedIriIds(np).contains(obj) || Utils.getEmbeddedIriIds(np).contains(obj)) {
                    linkComp.add(AttributeAppender.append("class", "introduced"));
                }
            }
        }
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public void finalizeValues() {
    }

    private String getLabelString(IRI iri) {
        if (template.getLabel(iri) != null) {
            return template.getLabel(iri).replaceFirst(" - .*$", "");
        } else if (context.getLabel(iri) != null) {
            return context.getLabel(iri).replaceFirst(" - .*$", "");
        } else {
            return IriItem.getShortNameFromURI(iri.stringValue());
        }
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public void removeFromContext() {
        // Nothing to be done here.
    }

    private String getFullValue() {
        String s = model.getObject();
        if (s == null) return null;
        if (template.isAutoEscapePlaceholder(iri)) {
            s = Utils.urlEncode(s);
        }
        if (!prefix.isEmpty()) {
            s = prefix + s;
        }
        return s;
    }

    private boolean isNanopubValue(Object obj) {
        if (obj == null) return false;
        if (obj.toString().equals(LocalUri.PREFIX + "nanopub")) return true;
        if (context.getExistingNanopub() == null) return false;
        return obj.toString().equals(context.getExistingNanopub().getUri().stringValue());
    }

    private String getNanopubValue() {
        if (context.getExistingNanopub() != null) {
            return context.getExistingNanopub().getUri().stringValue();
        } else {
            return LocalUri.PREFIX + "nanopub";
        }
    }

    private boolean isAssertionValue(Object obj) {
        if (obj == null) return false;
        if (obj.toString().equals(LocalUri.PREFIX + "assertion")) return true;
        if (context.getExistingNanopub() == null) return false;
        return obj.toString().equals(context.getExistingNanopub().getAssertionUri().stringValue());
    }

    private String getAssertionValue() {
        if (context.getExistingNanopub() != null) {
            return context.getExistingNanopub().getAssertionUri().stringValue();
        } else {
            return LocalUri.PREFIX + "assertion";
        }
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public boolean isUnifiableWith(Value v) {
        if (v == null) return true;
        if (v instanceof IRI) {
            String vs = v.stringValue();
            if (vs.equals(LocalUri.PREFIX + "nanopub")) {
                vs = getNanopubValue();
            } else if (vs.equals(LocalUri.PREFIX + "assertion")) {
                vs = getAssertionValue();
            }
            if (vs.startsWith(prefix)) vs = vs.substring(prefix.length());
//                        if (Utils.isLocalURI(vs)) vs = vs.replaceFirst("^" + LocalUri.PREFIX, "");
            if (template.isAutoEscapePlaceholder(iri)) {
                vs = Utils.urlDecode(vs);
            }
            Validatable<String> validatable = new Validatable<>(vs);
//                        if (template.isLocalResource(iri) && !Utils.isUriPostfix(vs)) {
//                                vs = Utils.getUriPostfix(vs);
//                        }
            new Validator().validate(validatable);
            if (!validatable.isValid()) {
                return false;
            }
            if (model.getObject().isEmpty()) {
                return true;
            }
            return vs.equals(model.getObject());
        } else if (v instanceof Literal vL) {
            if (template.getRegex(iri) != null && !v.stringValue().matches(template.getRegex(iri))) {
                return false;
            }
            String languagetag = template.getLanguageTag(iri);
            IRI datatype = template.getDatatype(iri);
            if (languagetag != null) {
                if (vL.getLanguage().isEmpty() || !Literals.normalizeLanguageTag(vL.getLanguage().get()).equals(languagetag)) {
                    return false;
                }
            } else if (datatype != null) {
                if (!vL.getDatatype().equals(datatype)) {
                    return false;
                }
            }
            if (linkComp.getDefaultModelObject() == null || linkComp.getDefaultModelObject().toString().isEmpty()) {
                return true;
            }
            return linkComp.getDefaultModelObject().equals("\"" + v.stringValue() + "\"");
        }
        return false;
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public void unifyWith(Value v) throws UnificationException {
        if (v == null) return;
        String vs = v.stringValue();
        if (!isUnifiableWith(v)) {
            logger.error("Cannot unify {}", v);
            throw new UnificationException(vs);
        }
        if (v instanceof IRI) {
            if (vs.equals(LocalUri.PREFIX + "nanopub")) {
                vs = getNanopubValue();
            } else if (vs.equals(LocalUri.PREFIX + "assertion")) {
                vs = getAssertionValue();
            }
            if (!prefix.isEmpty() && vs.startsWith(prefix)) {
                vs = vs.substring(prefix.length());
                // With read-only items, we don't need preliminary local identifiers:
//                        } else if (Utils.isLocalURI(vs)) {
//                                vs = vs.replaceFirst("^" + LocalUri.PREFIX, "");
//                        } else if (template.isLocalResource(iri) && !Utils.isUriPostfix(vs)) {
//                                vs = Utils.getUriPostfix(vs);
            }
            if (template.isAutoEscapePlaceholder(iri)) {
                vs = Utils.urlDecode(vs);
            }
            model.setObject(vs);
        } else if (v instanceof Literal vL) {
            if (vs.length() >= LONG_LITERAL_LENGTH) {
                linkComp.add(AttributeAppender.append("class", "long-literal collapsed"));
                showMoreLabelLiteral.setVisible(true);
            }
            if (vL.getLanguage().isPresent()) {
                model.setObject("\"" + vs + "\"");
                languageModel.setObject("(" + Literals.normalizeLanguageTag(vL.getLanguage().get()) + ")");
                languageComp.setVisible(true);
            } else if (!vL.getDatatype().equals(XSD.STRING)) {
                model.setObject("\"" + vs + "\"");
                datatypeModel.setObject("(" + vL.getDatatype().stringValue().replace(XSD.NAMESPACE, "xsd:") + ")");
                datatypeComp.setVisible(true);
            } else {
                model.setObject("\"" + vs + "\"");
            }
            // TODO Didn't manage to encode this into a working regex:
            if (vs.startsWith("<p>") || vs.startsWith("<p ") || vs.startsWith("<div>") || vs.startsWith("<div ") || vs.startsWith("<span>") || vs.startsWith("<span ") || vs.startsWith("<img ")) {
                linkComp.setVisible(false);
                extraModel.setObject(Utils.sanitizeHtml(vs));
                extraComp.setEscapeModelStrings(false);
                extraComp.setVisible(true);
                showMoreLabelLiteral.setVisible(false);
                showMoreLabelHTML.setVisible(true);
            }
        }
    }

    protected class Validator extends InvalidityHighlighting implements IValidator<String> {

        private static final long serialVersionUID = 1L;

        /**
         * Default constructor for Validator.
         */
        public Validator() {
        }

        @Override
        public void validate(IValidatable<String> s) {
            String sv = s.getValue();
            String p = prefix;
            if (template.isAutoEscapePlaceholder(iri)) {
                sv = Utils.urlEncode(sv);
            }
            if (sv.matches("https?://.+")) {
                p = "";
            } else if (sv.contains(":")) {
                s.error(new ValidationError("Colon character is not allowed in postfix"));
            }
            String iriString = p + sv;
            if (iriString.matches("[^:# ]+")) {
                p = LocalUri.PREFIX;
                iriString = p + sv;
            }
            try {
                ParsedIRI piri = new ParsedIRI(iriString);
                if (!piri.isAbsolute()) {
                    s.error(new ValidationError("IRI not well-formed"));
                }
                if (p.isEmpty() && !Utils.isLocalURI(sv) && !sv.matches("https?://.+")) {
                    s.error(new ValidationError("Only http(s):// IRIs are allowed here"));
                }
            } catch (URISyntaxException ex) {
                s.error(new ValidationError("IRI not well-formed"));
            }
            String regex = template.getRegex(iri);
            if (regex != null) {
                if (!sv.matches(regex)) {
                    s.error(new ValidationError("Value '" + sv + "' doesn't match the pattern '" + regex + "'"));
                }
            }
            if (template.isRestrictedChoicePlaceholder(iri)) {
                if (!restrictedChoice.getPossibleValues().contains(iriString) && !restrictedChoice.hasPossibleRefValues()) {
                    // not checking the possible ref values can overgenerate, but normally works
                    s.error(new ValidationError("Invalid choice"));
                }
            }
            if (template.isExternalUriPlaceholder(iri)) {
                if (!iriString.matches("https?://.+")) {
                    s.error(new ValidationError("Not an external IRI"));
                }
            }
            if (template.isTrustyUriPlaceholder(iri)) {
                if (!TrustyUriUtils.isPotentialTrustyUri(iriString)) {
                    s.error(new ValidationError("Not a trusty URI"));
                }
            }
            if (iri.equals(NTEMPLATE.CREATOR_PLACEHOLDER) && context.getExistingNanopub() != null) {
                boolean found = false;
                for (IRI creator : SimpleCreatorPattern.getCreators(context.getExistingNanopub())) {
                    if (creator.stringValue().equals(iriString)) {
                        found = true;
                        break;
                    }
                }
                if (!found) {
                    s.error(new ValidationError("Not a creator of nanopub"));
                }
            }
        }

    }

    /**
     * <p>toString.</p>
     *
     * @return a {@link java.lang.String} object
     */
    public String toString() {
        return "[read-only IRI item: " + iri + "]";
    }

}

1	package com.knowledgepixels.nanodash.component;
2
3	import com.knowledgepixels.nanodash.LocalUri;
4	import com.knowledgepixels.nanodash.RestrictedChoice;
5	import com.knowledgepixels.nanodash.User;
6	import com.knowledgepixels.nanodash.Utils;
7	import com.knowledgepixels.nanodash.component.StatementItem.RepetitionGroup;
8	import com.knowledgepixels.nanodash.page.ExplorePage;
9	import com.knowledgepixels.nanodash.page.UserPage;
10	import com.knowledgepixels.nanodash.template.ContextType;
11	import com.knowledgepixels.nanodash.template.Template;
12	import com.knowledgepixels.nanodash.template.TemplateContext;
13	import com.knowledgepixels.nanodash.template.UnificationException;
14	import net.trustyuri.TrustyUriUtils;
15	import org.apache.commons.codec.Charsets;
16	import org.apache.wicket.behavior.AttributeAppender;
17	import org.apache.wicket.markup.html.basic.Label;
18	import org.apache.wicket.markup.html.link.ExternalLink;
19	import org.apache.wicket.markup.html.panel.Panel;
20	import org.apache.wicket.model.IModel;
21	import org.apache.wicket.model.Model;
22	import org.apache.wicket.validation.IValidatable;
23	import org.apache.wicket.validation.IValidator;
24	import org.apache.wicket.validation.Validatable;
25	import org.apache.wicket.validation.ValidationError;
26	import org.eclipse.rdf4j.common.net.ParsedIRI;
27	import org.eclipse.rdf4j.model.IRI;
28	import org.eclipse.rdf4j.model.Literal;
29	import org.eclipse.rdf4j.model.Value;
30	import org.eclipse.rdf4j.model.ValueFactory;
31	import org.eclipse.rdf4j.model.impl.SimpleValueFactory;
32	import org.eclipse.rdf4j.model.util.Literals;
33	import org.eclipse.rdf4j.model.vocabulary.XSD;
34	import org.nanopub.Nanopub;
35	import org.nanopub.SimpleCreatorPattern;
36	import org.nanopub.vocabulary.NTEMPLATE;
37	import org.slf4j.Logger;
38	import org.slf4j.LoggerFactory;
39
40	import java.net.URISyntaxException;
41	import java.net.URLEncoder;
42	import java.util.HashMap;
43	import java.util.Map;
44
45	/**
46	* ReadonlyItem is a component that displays a read-only item in the form.
47	*/
48	public class ReadonlyItem extends Panel implements ContextComponent {
49
50	// TODO: Make ContextComponent an abstract class with superclass Panel, and move the common code of the form items there.
51
52	private static final long serialVersionUID = 1L;
53	private static final int LONG_LITERAL_LENGTH = 100;
54	private static final Logger logger = LoggerFactory.getLogger(ReadonlyItem.class);	×
55	private static final ValueFactory vf = SimpleValueFactory.getInstance();	×
56
57	private IModel<String> model;
58	private TemplateContext context;
59	private String prefix;
60	private ExternalLink linkComp;
61	private Label extraComp, languageComp, datatypeComp;
62	private IModel<String> extraModel, languageModel, datatypeModel;
63	private IRI iri;
64	private RestrictedChoice restrictedChoice;
65	private Label showMoreLabelLiteral, showMoreLabelHTML;
66	private final Template template;
67
68	/**
69	* Constructor for ReadonlyItem.
70	*
71	* @param id the component id
72	* @param parentId the parent id (e.g., "subj", "obj")
73	* @param iriP the IRI of the item
74	* @param objectPosition whether this is an object position
75	* @param statementPartId the statement part ID
76	* @param rg the repetition group
77	*/
78	public ReadonlyItem(String id, String parentId, final IRI iriP, boolean objectPosition, IRI statementPartId, final RepetitionGroup rg) {
79	super(id);	×
80	context = rg.getContext();	×
81	this.iri = iriP;	×
82	template = context.getTemplate();	×
83	model = context.getComponentModels().get(iri);	×
84	if (model == null) {	×
85	model = Model.of("");	×
86	context.getComponentModels().put(iri, model);	×
87	}
88	String postfix = Utils.getUriPostfix(iri);	×
89	if (context.hasParam(postfix)) {	×
90	model.setObject(context.getParam(postfix));	×
91	}
92
93	final Map<String, String> foafNameMap;
94	if (context.getExistingNanopub() == null) {	×
95	foafNameMap = new HashMap<>();	×
96	} else {
97	foafNameMap = Utils.getFoafNameMap(context.getExistingNanopub());	×
98	}
99
100	prefix = template.getPrefix(iri);	×
101	if (prefix == null) prefix = "";	×
102	if (template.isRestrictedChoicePlaceholder(iri)) {	×
103	restrictedChoice = new RestrictedChoice(iri, context);	×
104	}
105	add(new Label("prefix", new Model<String>() {	×
106
107	private static final long serialVersionUID = 1L;
108
109	@Override
110	public String getObject() {
111	String prefixLabel = template.getPrefixLabel(iri);	×
112	String v = getFullValue();	×
113	if (prefixLabel == null \|\| User.isUser(v) \|\| foafNameMap.containsKey(v)) {	×
114	return "";	×
115	} else {
116	if (!prefixLabel.isEmpty() && parentId.equals("subj") && !prefixLabel.matches("https?://.*")) {	×
117	// Capitalize first letter of label if at subject position:
118	prefixLabel = prefixLabel.substring(0, 1).toUpperCase() + prefixLabel.substring(1);	×
119	}
120	return prefixLabel;	×
121	}
122	}
123
124	}));
125
126	linkComp = new ExternalLink("link", new Model<String>() {	×
127
128	private static final long serialVersionUID = 1L;
129
130	@Override
131	public String getObject() {
132	String obj = getFullValue();	×
133	if (obj == null) return "";	×
134	if (obj.equals(LocalUri.PREFIX + "nanopub")) {	×
135	if (context.getExistingNanopub() != null) {	×
136	obj = context.getExistingNanopub().getUri().stringValue();	×
137	return ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);	×
138	} else {
139	return "";	×
140	}
141	} else if (obj.equals(LocalUri.PREFIX + "assertion")) {	×
142	if (context.getExistingNanopub() != null) {	×
143	obj = context.getExistingNanopub().getAssertionUri().stringValue();	×
144	return ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);	×
145	} else {
146	return "";	×
147	}
148	} else if (User.isUser(obj)) {	×
149	return UserPage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);	×
150	} else if (obj.matches("https?://.+")) {	×
151	return ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);	×
152	} else {
153	return "";	×
154	}
155	}
156
157	}, new Model<String>() {	×
158
159	private static final long serialVersionUID = 1L;
160
161	@Override
162	public String getObject() {
163	String obj = getFullValue();	×
164	if (obj != null && obj.matches("https?://.+")) {	×
165	IRI objIri = vf.createIRI(obj);	×
166	if (iri.equals(NTEMPLATE.CREATOR_PLACEHOLDER)) {	×
167	if (objectPosition) {	×
168	return "me (" + User.getShortDisplayName(objIri) + ")";	×
169	} else {
170	return "I (" + User.getShortDisplayName(objIri) + ")";	×
171	}
172	} else if (isAssertionValue(objIri)) {	×
173	if (context.getType() == ContextType.ASSERTION) {	×
174	return "this assertion";	×
175	} else {
176	return "the assertion above";	×
177	}
178	} else if (isNanopubValue(objIri)) {	×
179	return "this nanopublication";	×
180	} else if (User.isUser(obj)) {	×
181	return User.getShortDisplayName(objIri);	×
182	} else if (foafNameMap.containsKey(obj)) {	×
183	return foafNameMap.get(obj);	×
184	}
185	return getLabelString(objIri);	×
186	}
187	return obj;	×
188	}
189
190	});
191	if (template.isIntroducedResource(iri) \|\| template.isEmbeddedResource(iri)) {	×
192	linkComp.add(AttributeAppender.append("class", "introduced"));	×
193	}
194	add(linkComp);	×
195	add(new Label("description", new Model<String>() {	×
196
197	private static final long serialVersionUID = 1L;
198
199	@Override
200	public String getObject() {
201	String obj = getFullValue();	×
202	if (obj != null && obj.matches("https?://.+")) {	×
203	IRI objIri = vf.createIRI(obj);	×
204	if (isAssertionValue(objIri)) {	×
205	return "This is the identifier for the assertion of this nanopublication.";	×
206	} else if (isNanopubValue(objIri)) {	×
207	return "This is the identifier for this whole nanopublication.";	×
208	} else if (context.isReadOnly() && obj.startsWith(context.getExistingNanopub().getUri().stringValue())) {	×
209	return "This is a local identifier minted within the nanopublication.";	×
210	}
211	String labelString = getLabelString(objIri);	×
212	String description = "";	×
213	if (labelString.contains(" - ")) description = labelString.replaceFirst("^.* - ", "");	×
214	return description;	×
215	} else if (obj != null && obj.startsWith("\"")) {	×
216	return "(this is a literal)";	×
217	}
218	return "";	×
219	}
220
221	}));
222	Model<String> uriModel = new Model<String>() {	×
223
224	private static final long serialVersionUID = 1L;
225
226	@Override
227	public String getObject() {
228	String obj = getFullValue();	×
229	if (obj != null && obj.startsWith("\"")) return "";	×
230	if (isAssertionValue(obj)) {	×
231	return getAssertionValue();	×
232	} else if (isNanopubValue(obj)) {	×
233	return getNanopubValue();	×
234	}
235	return obj;	×
236	}
237
238	};
239	add(Utils.getUriLink("uri", uriModel));	×
240	extraModel = Model.of("");	×
241	extraComp = new Label("extra", extraModel);	×
242	extraComp.setVisible(false);	×
243	add(extraComp);	×
244	languageModel = Model.of("");	×
245	languageComp = new Label("language", languageModel);	×
246	languageComp.setVisible(false);	×
247	add(languageComp);	×
248	datatypeModel = Model.of("");	×
249	datatypeComp = new Label("datatype", datatypeModel);	×
250	datatypeComp.setVisible(false);	×
251	add(datatypeComp);	×
252
253	showMoreLabelLiteral = new Label("show-more-literal", "");	×
254	add(showMoreLabelLiteral);	×
255	showMoreLabelLiteral.setVisible(false);	×
256
257	showMoreLabelHTML = new Label("show-more-html", "");	×
258	add(showMoreLabelHTML);	×
259	showMoreLabelHTML.setVisible(false);	×
260	}	×
261
262	/**
263	* {@inheritDoc}
264	*/
265	@Override
266	public void fillFinished() {
267	String obj = getFullValue();	×
268	if (obj != null) {	×
269	if (isAssertionValue(obj)) {	×
270	linkComp.add(new AttributeAppender("class", "this-assertion"));	×
271	} else if (isNanopubValue(obj)) {	×
272	linkComp.add(new AttributeAppender("class", "this-nanopub"));	×
273	} else if (context.getExistingNanopub() != null) {	×
274	Nanopub np = context.getExistingNanopub();	×
275	if (Utils.getIntroducedIriIds(np).contains(obj) \|\| Utils.getEmbeddedIriIds(np).contains(obj)) {	×
276	linkComp.add(AttributeAppender.append("class", "introduced"));	×
277	}
278	}
279	}
280	}	×
281
282	/**
283	* {@inheritDoc}
284	*/
285	@Override
286	public void finalizeValues() {
287	}	×
288
289	private String getLabelString(IRI iri) {
290	if (template.getLabel(iri) != null) {	×
291	return template.getLabel(iri).replaceFirst(" - .*$", "");	×
292	} else if (context.getLabel(iri) != null) {	×
293	return context.getLabel(iri).replaceFirst(" - .*$", "");	×
294	} else {
295	return IriItem.getShortNameFromURI(iri.stringValue());	×
296	}
297	}
298
299	/**
300	* {@inheritDoc}
301	*/
302	@Override
303	public void removeFromContext() {
304	// Nothing to be done here.
305	}	×
306
307	private String getFullValue() {
308	String s = model.getObject();	×
309	if (s == null) return null;	×
310	if (template.isAutoEscapePlaceholder(iri)) {	×
311	s = Utils.urlEncode(s);	×
312	}
313	if (!prefix.isEmpty()) {	×
314	s = prefix + s;	×
315	}
316	return s;	×
317	}
318
319	private boolean isNanopubValue(Object obj) {
320	if (obj == null) return false;	×
321	if (obj.toString().equals(LocalUri.PREFIX + "nanopub")) return true;	×
322	if (context.getExistingNanopub() == null) return false;	×
323	return obj.toString().equals(context.getExistingNanopub().getUri().stringValue());	×
324	}
325
326	private String getNanopubValue() {
327	if (context.getExistingNanopub() != null) {	×
328	return context.getExistingNanopub().getUri().stringValue();	×
329	} else {
330	return LocalUri.PREFIX + "nanopub";	×
331	}
332	}
333
334	private boolean isAssertionValue(Object obj) {
335	if (obj == null) return false;	×
336	if (obj.toString().equals(LocalUri.PREFIX + "assertion")) return true;	×
337	if (context.getExistingNanopub() == null) return false;	×
338	return obj.toString().equals(context.getExistingNanopub().getAssertionUri().stringValue());	×
339	}
340
341	private String getAssertionValue() {
342	if (context.getExistingNanopub() != null) {	×
343	return context.getExistingNanopub().getAssertionUri().stringValue();	×
344	} else {
345	return LocalUri.PREFIX + "assertion";	×
346	}
347	}
348
349	/**
350	* {@inheritDoc}
351	*/
352	@Override
353	public boolean isUnifiableWith(Value v) {
354	if (v == null) return true;	×
355	if (v instanceof IRI) {	×
356	String vs = v.stringValue();	×
357	if (vs.equals(LocalUri.PREFIX + "nanopub")) {	×
358	vs = getNanopubValue();	×
359	} else if (vs.equals(LocalUri.PREFIX + "assertion")) {	×
360	vs = getAssertionValue();	×
361	}
362	if (vs.startsWith(prefix)) vs = vs.substring(prefix.length());	×
363	// if (Utils.isLocalURI(vs)) vs = vs.replaceFirst("^" + LocalUri.PREFIX, "");
364	if (template.isAutoEscapePlaceholder(iri)) {	×
365	vs = Utils.urlDecode(vs);	×
366	}
367	Validatable<String> validatable = new Validatable<>(vs);	×
368	// if (template.isLocalResource(iri) && !Utils.isUriPostfix(vs)) {
369	// vs = Utils.getUriPostfix(vs);
370	// }
371	new Validator().validate(validatable);	×
372	if (!validatable.isValid()) {	×
373	return false;	×
374	}
375	if (model.getObject().isEmpty()) {	×
376	return true;	×
377	}
378	return vs.equals(model.getObject());	×
379	} else if (v instanceof Literal vL) {	×
380	if (template.getRegex(iri) != null && !v.stringValue().matches(template.getRegex(iri))) {	×
381	return false;	×
382	}
383	String languagetag = template.getLanguageTag(iri);	×
384	IRI datatype = template.getDatatype(iri);	×
385	if (languagetag != null) {	×
386	if (vL.getLanguage().isEmpty() \|\| !Literals.normalizeLanguageTag(vL.getLanguage().get()).equals(languagetag)) {	×
387	return false;	×
388	}
389	} else if (datatype != null) {	×
390	if (!vL.getDatatype().equals(datatype)) {	×
391	return false;	×
392	}
393	}
394	if (linkComp.getDefaultModelObject() == null \|\| linkComp.getDefaultModelObject().toString().isEmpty()) {	×
395	return true;	×
396	}
397	return linkComp.getDefaultModelObject().equals("\"" + v.stringValue() + "\"");	×
398	}
399	return false;	×
400	}
401
402	/**
403	* {@inheritDoc}
404	*/
405	@Override
406	public void unifyWith(Value v) throws UnificationException {
407	if (v == null) return;	×
408	String vs = v.stringValue();	×
409	if (!isUnifiableWith(v)) {	×
410	logger.error("Cannot unify {}", v);	×
411	throw new UnificationException(vs);	×
412	}
413	if (v instanceof IRI) {	×
414	if (vs.equals(LocalUri.PREFIX + "nanopub")) {	×
415	vs = getNanopubValue();	×
416	} else if (vs.equals(LocalUri.PREFIX + "assertion")) {	×
417	vs = getAssertionValue();	×
418	}
419	if (!prefix.isEmpty() && vs.startsWith(prefix)) {	×
420	vs = vs.substring(prefix.length());	×
421	// With read-only items, we don't need preliminary local identifiers:
422	// } else if (Utils.isLocalURI(vs)) {
423	// vs = vs.replaceFirst("^" + LocalUri.PREFIX, "");
424	// } else if (template.isLocalResource(iri) && !Utils.isUriPostfix(vs)) {
425	// vs = Utils.getUriPostfix(vs);
426	}
427	if (template.isAutoEscapePlaceholder(iri)) {	×
428	vs = Utils.urlDecode(vs);	×
429	}
430	model.setObject(vs);	×
431	} else if (v instanceof Literal vL) {	×
432	if (vs.length() >= LONG_LITERAL_LENGTH) {	×
433	linkComp.add(AttributeAppender.append("class", "long-literal collapsed"));	×
434	showMoreLabelLiteral.setVisible(true);	×
435	}
436	if (vL.getLanguage().isPresent()) {	×
437	model.setObject("\"" + vs + "\"");	×
438	languageModel.setObject("(" + Literals.normalizeLanguageTag(vL.getLanguage().get()) + ")");	×
439	languageComp.setVisible(true);	×
440	} else if (!vL.getDatatype().equals(XSD.STRING)) {	×
441	model.setObject("\"" + vs + "\"");	×
442	datatypeModel.setObject("(" + vL.getDatatype().stringValue().replace(XSD.NAMESPACE, "xsd:") + ")");	×
443	datatypeComp.setVisible(true);	×
444	} else {
445	model.setObject("\"" + vs + "\"");	×
446	}
447	// TODO Didn't manage to encode this into a working regex:
448	if (vs.startsWith("<p>") \|\| vs.startsWith("<p ") \|\| vs.startsWith("<div>") \|\| vs.startsWith("<div ") \|\| vs.startsWith("<span>") \|\| vs.startsWith("<span ") \|\| vs.startsWith("<img ")) {	×
449	linkComp.setVisible(false);	×
450	extraModel.setObject(Utils.sanitizeHtml(vs));	×
451	extraComp.setEscapeModelStrings(false);	×
452	extraComp.setVisible(true);	×
453	showMoreLabelLiteral.setVisible(false);	×
454	showMoreLabelHTML.setVisible(true);	×
455	}
456	}
457	}	×
458
459	protected class Validator extends InvalidityHighlighting implements IValidator<String> {
460
461	private static final long serialVersionUID = 1L;
462
463	/**
464	* Default constructor for Validator.
465	*/
466	public Validator() {	×
467	}	×
468
469	@Override
470	public void validate(IValidatable<String> s) {
471	String sv = s.getValue();	×
472	String p = prefix;	×
473	if (template.isAutoEscapePlaceholder(iri)) {	×
474	sv = Utils.urlEncode(sv);	×
475	}
476	if (sv.matches("https?://.+")) {	×
477	p = "";	×
478	} else if (sv.contains(":")) {	×
479	s.error(new ValidationError("Colon character is not allowed in postfix"));	×
480	}
481	String iriString = p + sv;	×
482	if (iriString.matches("[^:# ]+")) {	×
483	p = LocalUri.PREFIX;	×
484	iriString = p + sv;	×
485	}
486	try {
487	ParsedIRI piri = new ParsedIRI(iriString);	×
488	if (!piri.isAbsolute()) {	×
489	s.error(new ValidationError("IRI not well-formed"));	×
490	}
491	if (p.isEmpty() && !Utils.isLocalURI(sv) && !sv.matches("https?://.+")) {	×
492	s.error(new ValidationError("Only http(s):// IRIs are allowed here"));	×
493	}
494	} catch (URISyntaxException ex) {	×
495	s.error(new ValidationError("IRI not well-formed"));	×
496	}	×
497	String regex = template.getRegex(iri);	×
498	if (regex != null) {	×
499	if (!sv.matches(regex)) {	×
500	s.error(new ValidationError("Value '" + sv + "' doesn't match the pattern '" + regex + "'"));	×
501	}
502	}
503	if (template.isRestrictedChoicePlaceholder(iri)) {	×
504	if (!restrictedChoice.getPossibleValues().contains(iriString) && !restrictedChoice.hasPossibleRefValues()) {	×
505	// not checking the possible ref values can overgenerate, but normally works
506	s.error(new ValidationError("Invalid choice"));	×
507	}
508	}
509	if (template.isExternalUriPlaceholder(iri)) {	×
510	if (!iriString.matches("https?://.+")) {	×
511	s.error(new ValidationError("Not an external IRI"));	×
512	}
513	}
514	if (template.isTrustyUriPlaceholder(iri)) {	×
515	if (!TrustyUriUtils.isPotentialTrustyUri(iriString)) {	×
516	s.error(new ValidationError("Not a trusty URI"));	×
517	}
518	}
519	if (iri.equals(NTEMPLATE.CREATOR_PLACEHOLDER) && context.getExistingNanopub() != null) {	×
520	boolean found = false;	×
521	for (IRI creator : SimpleCreatorPattern.getCreators(context.getExistingNanopub())) {	×
522	if (creator.stringValue().equals(iriString)) {	×
523	found = true;	×
524	break;	×
525	}
526	}	×
527	if (!found) {	×
528	s.error(new ValidationError("Not a creator of nanopub"));	×
529	}
530	}
531	}	×
532
533	}
534
535	/**
536	* <p>toString.</p>
537	*
538	* @return a {@link java.lang.String} object
539	*/
540	public String toString() {
541	return "[read-only IRI item: " + iri + "]";	×
542	}
543
544	}

knowledgepixels / nanodash / 17760079101

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