17725645560

Committed 15 Sep 2025 07:36AM UTC coverage: 13.735% (-0.001%) from 13.736%

Build # 17725645560

Build Type

push

github

Committed by

tkuhn

Commit Message

Include existing journals in Spaces

Run Details

433 of 3988 branches covered (10.86%)

Branch coverage included in aggregate %.

1113 of 7268 relevant lines covered (15.31%)

0.68 hits per line

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0.0

src/main/java/com/knowledgepixels/nanodash/connector/ConnectorConfig.java

package com.knowledgepixels.nanodash.connector;

import com.knowledgepixels.nanodash.connector.ios.DsConfig;
import com.knowledgepixels.nanodash.connector.pensoft.BdjConfig;
import com.knowledgepixels.nanodash.connector.pensoft.RioConfig;
import org.eclipse.rdf4j.model.IRI;

import java.io.Serializable;
import java.util.*;

/**
 * Abstract class representing the configuration for different connectors in the Nanodash application.
 */
public abstract class ConnectorConfig implements Serializable {

    /**
     * Returns the ConnectorConfig instance for a given connector ID.
     *
     * @param connectorId the ID of the connector
     * @return the ConnectorConfig instance corresponding to the connector ID.
     */
    public static ConnectorConfig get(String connectorId) {
        if (connectorId.equals("ios/ds")) {
            return DsConfig.get();
        } else if (connectorId.equals("pensoft/bdj")) {
            return BdjConfig.get();
        } else if (connectorId.equals("pensoft/rio")) {
            return RioConfig.get();
        } else {
            return null;
        }
    }

    /**
     * Returns the logo file name for the connector.
     *
     * @return the logo file name
     */
    public abstract String getLogoFileName();

    /**
     * Returns the file name for the submit image.
     *
     * @return the submit image file name
     */
    public abstract String getSubmitImageFileName();

    /**
     * Returns the name of the journal associated with the connector.
     *
     * @return the journal name
     */
    public abstract String getJournalName();

    /**
     * Returns the abbreviation of the journal associated with the connector.
     *
     * @return the journal abbreviation
     */
    public abstract String getJournalAbbrev();

    /**
     * Returns the URL of the journal's homepage.
     *
     * @return the journal URL
     */
    public abstract String getJournalUrl();

    /**
     * Returns the ISSN of the journal associated with the connector.
     *
     * @return the journal ISSN
     */
    public abstract String getJournalIssn();

    /**
     * Returns the prefix URL for review pages associated with the connector.
     *
     * @return the review URL prefix
     */
    public abstract String getReviewUrlPrefix();

    /**
     * Returns the API call URL to fetch candidate nanopublications.
     *
     * @return the API call URL for candidate nanopublications
     */
    public abstract String getCandidateNanopubsApiCall();

    /**
     * Returns the connection instruction for the connector.
     *
     * @return the connection instruction
     */
    public abstract String getConnectInstruction();

    /**
     * Returns a list of option groups for the connector.
     *
     * @return a list of ConnectorOptionGroup instances
     */
    public abstract List<ConnectorOptionGroup> getOptions();

    /**
     * Returns the general reactions API call.
     *
     * @return the general reactions API call, or {@code null} if not applicable
     */
    public String getGeneralReactionsApiCall() {
        return null;
    }

    /**
     * Returns the accepted nanopublications API call.
     *
     * @return the accepted nanopublications API call
     */
    public String getAcceptedNanopubsApiCall() {
        return null;
    }

    /**
     * Returns the IDs of technical editors for the connector.
     *
     * @return a set of IRI IDs representing technical editors, or an empty set if not applicable
     */
    public Set<IRI> getTechnicalEditorIds() {
        return Collections.emptySet();
    }

    /**
     * Returns the IRI of the nanopublication type for this connector.
     *
     * @return the IRI of the nanopublication type, or null if not applicable
     */
    public IRI getNanopubType() {
        return null;
    }

    /**
     * Returns the target namespace for the connector.
     *
     * @return the target namespace as a String, or null if not applicable
     */
    public String getTargetNamespace() {
        return null;
    }

    /**
     * Returns any extra instructions for the connector.
     *
     * @return extra instructions as a String, or an empty string if there are none
     */
    public String getExtraInstructions() {
        return "";
    }

    private static Map<String, String> queryIds = new HashMap<>();

    static {
        load("RAkoDiXZG_CYt978-dZ_vffK-UTbN6e1bmtFy6qdmFzC4/get-latest-accepted-bdj");
        load("RAgnLJH8kcI_e488VdoyQ0g3-wcumj4mSiusxPmeAYsSI/get-latest-biodiv-candidates");
        load("RATpsBysLf8yXeMpY7PHKj-aKNCa4-4Okg1hi97OLDXIo/get-latest-accepted-ds");
        load("RAFNTW3jhWKnNvhMSOfYvG53ZAurxrFv_-vnIJkZyfAuo/get-latest-ds-candidates");
        load("RA0FiH8gukovvEHPBMn72zUDdMQylQmUwtIGNLYBZXGfk/get-ds-reactions");
        load("RAAXmnJdXHO86GqJs8VTdqapUWqCrHKRgRT2b4NfjAfgk/get-latest-accepted-rio");
        load("RAehKOCOnZ3uDBmI0kkCNTh5k9Nl6YYNj7tyc20tVymxY/get-latest-rio-candidates");
        load("RAe7k3L0oElPOrFoUMkUhqU9dGUqfBaUSw3cVplOUn3Fk/get-reactions");
    }

    private static void load(String queryId) {
        queryIds.put(queryId.substring(46), queryId);
    }

    /**
     * Returns the query ID for a given query name.
     *
     * @param queryName the name of the query
     * @return the query ID if it exists, otherwise null
     */
    public static String getQueryId(String queryName) {
        return queryIds.get(queryName);
    }

}

1	package com.knowledgepixels.nanodash.connector;
2
3	import com.knowledgepixels.nanodash.connector.ios.DsConfig;
4	import com.knowledgepixels.nanodash.connector.pensoft.BdjConfig;
5	import com.knowledgepixels.nanodash.connector.pensoft.RioConfig;
6	import org.eclipse.rdf4j.model.IRI;
7
8	import java.io.Serializable;
9	import java.util.*;
10
11	/**
12	* Abstract class representing the configuration for different connectors in the Nanodash application.
13	*/
14	public abstract class ConnectorConfig implements Serializable {	×
15
16	/**
17	* Returns the ConnectorConfig instance for a given connector ID.
18	*
19	* @param connectorId the ID of the connector
20	* @return the ConnectorConfig instance corresponding to the connector ID.
21	*/
22	public static ConnectorConfig get(String connectorId) {
23	if (connectorId.equals("ios/ds")) {	×
24	return DsConfig.get();	×
25	} else if (connectorId.equals("pensoft/bdj")) {	×
26	return BdjConfig.get();	×
27	} else if (connectorId.equals("pensoft/rio")) {	×
28	return RioConfig.get();	×
29	} else {
30	return null;	×
31	}
32	}
33
34	/**
35	* Returns the logo file name for the connector.
36	*
37	* @return the logo file name
38	*/
39	public abstract String getLogoFileName();
40
41	/**
42	* Returns the file name for the submit image.
43	*
44	* @return the submit image file name
45	*/
46	public abstract String getSubmitImageFileName();
47
48	/**
49	* Returns the name of the journal associated with the connector.
50	*
51	* @return the journal name
52	*/
53	public abstract String getJournalName();
54
55	/**
56	* Returns the abbreviation of the journal associated with the connector.
57	*
58	* @return the journal abbreviation
59	*/
60	public abstract String getJournalAbbrev();
61
62	/**
63	* Returns the URL of the journal's homepage.
64	*
65	* @return the journal URL
66	*/
67	public abstract String getJournalUrl();
68
69	/**
70	* Returns the ISSN of the journal associated with the connector.
71	*
72	* @return the journal ISSN
73	*/
74	public abstract String getJournalIssn();
75
76	/**
77	* Returns the prefix URL for review pages associated with the connector.
78	*
79	* @return the review URL prefix
80	*/
81	public abstract String getReviewUrlPrefix();
82
83	/**
84	* Returns the API call URL to fetch candidate nanopublications.
85	*
86	* @return the API call URL for candidate nanopublications
87	*/
88	public abstract String getCandidateNanopubsApiCall();
89
90	/**
91	* Returns the connection instruction for the connector.
92	*
93	* @return the connection instruction
94	*/
95	public abstract String getConnectInstruction();
96
97	/**
98	* Returns a list of option groups for the connector.
99	*
100	* @return a list of ConnectorOptionGroup instances
101	*/
102	public abstract List<ConnectorOptionGroup> getOptions();
103
104	/**
105	* Returns the general reactions API call.
106	*
107	* @return the general reactions API call, or {@code null} if not applicable
108	*/
109	public String getGeneralReactionsApiCall() {
110	return null;	×
111	}
112
113	/**
114	* Returns the accepted nanopublications API call.
115	*
116	* @return the accepted nanopublications API call
117	*/
118	public String getAcceptedNanopubsApiCall() {
119	return null;	×
120	}
121
122	/**
123	* Returns the IDs of technical editors for the connector.
124	*
125	* @return a set of IRI IDs representing technical editors, or an empty set if not applicable
126	*/
127	public Set<IRI> getTechnicalEditorIds() {
128	return Collections.emptySet();	×
129	}
130
131	/**
132	* Returns the IRI of the nanopublication type for this connector.
133	*
134	* @return the IRI of the nanopublication type, or null if not applicable
135	*/
136	public IRI getNanopubType() {
137	return null;	×
138	}
139
140	/**
141	* Returns the target namespace for the connector.
142	*
143	* @return the target namespace as a String, or null if not applicable
144	*/
145	public String getTargetNamespace() {
146	return null;	×
147	}
148
149	/**
150	* Returns any extra instructions for the connector.
151	*
152	* @return extra instructions as a String, or an empty string if there are none
153	*/
154	public String getExtraInstructions() {
155	return "";	×
156	}
157
158	private static Map<String, String> queryIds = new HashMap<>();	×
159
160	static {
161	load("RAkoDiXZG_CYt978-dZ_vffK-UTbN6e1bmtFy6qdmFzC4/get-latest-accepted-bdj");	×
162	load("RAgnLJH8kcI_e488VdoyQ0g3-wcumj4mSiusxPmeAYsSI/get-latest-biodiv-candidates");	×
163	load("RATpsBysLf8yXeMpY7PHKj-aKNCa4-4Okg1hi97OLDXIo/get-latest-accepted-ds");	×
164	load("RAFNTW3jhWKnNvhMSOfYvG53ZAurxrFv_-vnIJkZyfAuo/get-latest-ds-candidates");	×
165	load("RA0FiH8gukovvEHPBMn72zUDdMQylQmUwtIGNLYBZXGfk/get-ds-reactions");	×
166	load("RAAXmnJdXHO86GqJs8VTdqapUWqCrHKRgRT2b4NfjAfgk/get-latest-accepted-rio");	×
167	load("RAehKOCOnZ3uDBmI0kkCNTh5k9Nl6YYNj7tyc20tVymxY/get-latest-rio-candidates");	×
168	load("RAe7k3L0oElPOrFoUMkUhqU9dGUqfBaUSw3cVplOUn3Fk/get-reactions");	×
169	}	×
170
171	private static void load(String queryId) {
172	queryIds.put(queryId.substring(46), queryId);	×
173	}	×
174
175	/**
176	* Returns the query ID for a given query name.
177	*
178	* @param queryName the name of the query
179	* @return the query ID if it exists, otherwise null
180	*/
181	public static String getQueryId(String queryName) {
182	return queryIds.get(queryName);	×
183	}
184
185	}

knowledgepixels / nanodash / 17725645560

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