17380144000

Committed 01 Sep 2025 02:12PM UTC coverage: 12.03% (+0.05%) from 11.978%

Build # 17380144000

Build Type

push

github

Committed by

ashleycaselli

Commit Message

refactor: replace printStackTrace with logger.error for better error handling

Run Details

330 of 3850 branches covered (8.57%)

Branch coverage included in aggregate %.

958 of 6857 relevant lines covered (13.97%)

0.62 hits per line

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85.59

src/main/java/com/knowledgepixels/nanodash/WicketApplication.java

package com.knowledgepixels.nanodash;

import com.knowledgepixels.nanodash.connector.*;
import com.knowledgepixels.nanodash.connector.ios.DsNanopubPage;
import com.knowledgepixels.nanodash.connector.ios.DsOverviewPage;
import com.knowledgepixels.nanodash.connector.pensoft.BdjNanopubPage;
import com.knowledgepixels.nanodash.connector.pensoft.BdjOverviewPage;
import com.knowledgepixels.nanodash.connector.pensoft.RioNanopubPage;
import com.knowledgepixels.nanodash.connector.pensoft.RioOverviewPage;
import com.knowledgepixels.nanodash.page.*;
import org.apache.http.HttpResponse;
import org.apache.http.client.methods.HttpGet;
import org.apache.http.impl.client.CloseableHttpClient;
import org.apache.http.impl.client.HttpClientBuilder;
import org.apache.wicket.RuntimeConfigurationType;
import org.apache.wicket.Session;
import org.apache.wicket.protocol.http.WebApplication;
import org.apache.wicket.request.Request;
import org.apache.wicket.request.Response;
import org.apache.wicket.settings.ExceptionSettings;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

import java.awt.*;
import java.io.BufferedReader;
import java.io.IOException;
import java.io.InputStreamReader;
import java.net.URI;
import java.net.URISyntaxException;
import java.util.Properties;

/**
 * WicketApplication is the main application class for the Nanodash web application.
 * It initializes the application, mounts pages, and provides version information.
 */
public class WicketApplication extends WebApplication {

    /**
     * URL to fetch the latest release information from GitHub.
     * This URL points to the releases of the Nanodash repository.
     */
    public static final String LATEST_RELEASE_URL = "https://api.github.com/repos/knowledgepixels/nanodash/releases";
    private static final Logger logger = LoggerFactory.getLogger(WicketApplication.class);

    /**
     * Constructor for the WicketApplication.
     * Displays version information and provides instructions for accessing the application.
     */
    public WicketApplication() {
        if (Desktop.isDesktopSupported() && Desktop.getDesktop().isSupported(Desktop.Action.BROWSE)) {
            try {
                Desktop.getDesktop().browse(new URI("http://localhost:37373"));
            } catch (IOException | URISyntaxException ex) {
                logger.error("Error in opening browser", ex);
            }
        }
        String v = getThisVersion();
        String lv = getLatestVersion();
        System.err.println("");
        System.err.println("----------------------------------------");
        System.err.println("               Nanodash");
        System.err.println("----------------------------------------");
        System.err.println(" You are using version: " + v);
        System.err.println(" Latest public version: " + lv);
        System.err.println("----------------------------------------");
        System.err.println(" Your browser should show the Nanodash");
        System.err.println(" interface in a few seconds.");
        System.err.println("");
        System.err.println(" If not, point your browser to:");
        System.err.println(" http://localhost:37373");
        System.err.println("----------------------------------------");
        System.err.println("");
    }

    /**
     * Returns the home page class for the application.
     *
     * @return The HomePage class.
     */
    public Class<HomePage> getHomePage() {
        return HomePage.class;
    }

    /**
     * {@inheritDoc}
     * <p>
     * Initializes the application settings and mounts pages.
     */
    @Override
    protected void init() {
        super.init();

        getMarkupSettings().setDefaultMarkupEncoding("UTF-8");

        getExceptionSettings().setUnexpectedExceptionDisplay(ExceptionSettings.SHOW_NO_EXCEPTION_PAGE);

        mountPage(ErrorPage.MOUNT_PATH, ErrorPage.class);
        mountPage("/error/404", ErrorPage.class);
        mountPage("/error/500", ErrorPage.class);

        mountPage(UserPage.MOUNT_PATH, UserPage.class);
        mountPage(ChannelPage.MOUNT_PATH, ChannelPage.class);
        mountPage(SearchPage.MOUNT_PATH, SearchPage.class);
        mountPage(ExplorePage.MOUNT_PATH, ExplorePage.class);
        mountPage(ReferenceTablePage.MOUNT_PATH, ReferenceTablePage.class);
        mountPage(PublishPage.MOUNT_PATH, PublishPage.class);
        mountPage(PublishConfirmPage.MOUNT_PATH, PublishConfirmPage.class);
        mountPage(ProfilePage.MOUNT_PATH, ProfilePage.class);
        mountPage(UserListPage.MOUNT_PATH, UserListPage.class);
        mountPage(GroupDemoPage.MOUNT_PATH, GroupDemoPage.class);
        mountPage(GroupDemoPageSoc.MOUNT_PATH, GroupDemoPageSoc.class);
        mountPage(OrcidLinkingPage.MOUNT_PATH, OrcidLinkingPage.class);
        mountPage(OrcidLoginPage.MOUNT_PATH, OrcidLoginPage.class);
        mountPage(ConnectorListPage.MOUNT_PATH, ConnectorListPage.class);
        mountPage(MyChannelPage.MOUNT_PATH, MyChannelPage.class);
        mountPage(TermForwarder.MOUNT_PATH, TermForwarder.class);
        mountPage(ViewPage.MOUNT_PATH, ViewPage.class);
        mountPage(GetViewPage.MOUNT_PATH, GetViewPage.class);
        mountPage(DsOverviewPage.MOUNT_PATH, DsOverviewPage.class);
        mountPage(DsNanopubPage.MOUNT_PATH, DsNanopubPage.class);
        mountPage(RioOverviewPage.MOUNT_PATH, RioOverviewPage.class);
        mountPage(RioNanopubPage.MOUNT_PATH, RioNanopubPage.class);
        mountPage(BdjOverviewPage.MOUNT_PATH, BdjOverviewPage.class);
        mountPage(BdjNanopubPage.MOUNT_PATH, BdjNanopubPage.class);
        mountPage(FdoForwarder.MOUNT_PATH, FdoForwarder.class);
        mountPage(GetNamePage.MOUNT_PATH, GetNamePage.class);
        mountPage(TypePage.MOUNT_PATH, TypePage.class);
        mountPage(TestPage.MOUNT_PATH, TestPage.class);
        mountPage(ThingListPage.MOUNT_PATH, ThingListPage.class);
        mountPage(ResultTablePage.MOUNT_PATH, ResultTablePage.class);
        mountPage(GenOverviewPage.MOUNT_PATH, GenOverviewPage.class);
        mountPage(GenSelectPage.MOUNT_PATH, GenSelectPage.class);
        mountPage(GenPublishPage.MOUNT_PATH, GenPublishPage.class);
        mountPage(GenConnectPage.MOUNT_PATH, GenConnectPage.class);
        mountPage(GenNanopubPage.MOUNT_PATH, GenNanopubPage.class);
        mountPage(ProjectPage.MOUNT_PATH, ProjectPage.class);
        mountPage(QueryPage.MOUNT_PATH, QueryPage.class);
        mountPage(QueryListPage.MOUNT_PATH, QueryListPage.class);

        getCspSettings().blocking().disabled();
    }

    /**
     * {@inheritDoc}
     * <p>
     * Returns the runtime configuration type for the application.
     */
    @Override
    public RuntimeConfigurationType getConfigurationType() {
        return RuntimeConfigurationType.DEPLOYMENT;
    }


    private static String latestVersion = null;

    /**
     * Retrieves the latest version of the application from the GitHub API.
     *
     * @return The latest version as a string.
     */
    public static String getLatestVersion() {
        if (latestVersion != null) return latestVersion;
        try (CloseableHttpClient client = HttpClientBuilder.create().build()) {
            HttpResponse resp = client.execute(new HttpGet(LATEST_RELEASE_URL));
            int c = resp.getStatusLine().getStatusCode();
            if (c < 200 || c >= 300) throw new RuntimeException("HTTP error: " + c);
            try (BufferedReader reader = new BufferedReader(new InputStreamReader(resp.getEntity().getContent()))) {
                while (reader.ready()) {
                    String line = reader.readLine();
                    // TODO: Do proper JSON parsing
                    if (line.matches(".*\"tag_name\":\\s*\"nanodash-[0-9]+\\.[0-9]+\".*")) {
                        latestVersion = line.replaceFirst(".*?\"tag_name\":\\s*\"nanodash-([0-9]+\\.[0-9]+)\".*", "$1");
                        break;
                    }
                }
            }
        } catch (Exception ex) {
            logger.error("Error in fetching latest version", ex);
        }
        return latestVersion;
    }

    /**
     * Properties object to hold application properties.
     */
    public final static Properties properties = new Properties();

    static {
        try {
            properties.load(WicketApplication.class.getClassLoader().getResourceAsStream("nanodash.properties"));
        } catch (IOException ex) {
            logger.error("Error in loading properties", ex);
        }
    }

    /**
     * Retrieves the current version of the application.
     *
     * @return The current version as a string.
     */
    public static String getThisVersion() {
        return properties.getProperty("nanodash.version");
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public Session newSession(Request request, Response response) {
        return new NanodashSession(request);
    }

}

1	package com.knowledgepixels.nanodash;
2
3	import com.knowledgepixels.nanodash.connector.*;
4	import com.knowledgepixels.nanodash.connector.ios.DsNanopubPage;
5	import com.knowledgepixels.nanodash.connector.ios.DsOverviewPage;
6	import com.knowledgepixels.nanodash.connector.pensoft.BdjNanopubPage;
7	import com.knowledgepixels.nanodash.connector.pensoft.BdjOverviewPage;
8	import com.knowledgepixels.nanodash.connector.pensoft.RioNanopubPage;
9	import com.knowledgepixels.nanodash.connector.pensoft.RioOverviewPage;
10	import com.knowledgepixels.nanodash.page.*;
11	import org.apache.http.HttpResponse;
12	import org.apache.http.client.methods.HttpGet;
13	import org.apache.http.impl.client.CloseableHttpClient;
14	import org.apache.http.impl.client.HttpClientBuilder;
15	import org.apache.wicket.RuntimeConfigurationType;
16	import org.apache.wicket.Session;
17	import org.apache.wicket.protocol.http.WebApplication;
18	import org.apache.wicket.request.Request;
19	import org.apache.wicket.request.Response;
20	import org.apache.wicket.settings.ExceptionSettings;
21	import org.slf4j.Logger;
22	import org.slf4j.LoggerFactory;
23
24	import java.awt.*;
25	import java.io.BufferedReader;
26	import java.io.IOException;
27	import java.io.InputStreamReader;
28	import java.net.URI;
29	import java.net.URISyntaxException;
30	import java.util.Properties;
31
32	/**
33	* WicketApplication is the main application class for the Nanodash web application.
34	* It initializes the application, mounts pages, and provides version information.
35	*/
36	public class WicketApplication extends WebApplication {
37
38	/**
39	* URL to fetch the latest release information from GitHub.
40	* This URL points to the releases of the Nanodash repository.
41	*/
42	public static final String LATEST_RELEASE_URL = "https://api.github.com/repos/knowledgepixels/nanodash/releases";
43	private static final Logger logger = LoggerFactory.getLogger(WicketApplication.class);	3✔
44
45	/**
46	* Constructor for the WicketApplication.
47	* Displays version information and provides instructions for accessing the application.
48	*/
49	public WicketApplication() {	2✔
50	if (Desktop.isDesktopSupported() && Desktop.getDesktop().isSupported(Desktop.Action.BROWSE)) {	2!
51	try {
52	Desktop.getDesktop().browse(new URI("http://localhost:37373"));	×
53	} catch (IOException \| URISyntaxException ex) {	×
54	logger.error("Error in opening browser", ex);	×
55	}	×
56	}
57	String v = getThisVersion();	2✔
58	String lv = getLatestVersion();	2✔
59	System.err.println("");	3✔
60	System.err.println("----------------------------------------");	3✔
61	System.err.println(" Nanodash");	3✔
62	System.err.println("----------------------------------------");	3✔
63	System.err.println(" You are using version: " + v);	4✔
64	System.err.println(" Latest public version: " + lv);	4✔
65	System.err.println("----------------------------------------");	3✔
66	System.err.println(" Your browser should show the Nanodash");	3✔
67	System.err.println(" interface in a few seconds.");	3✔
68	System.err.println("");	3✔
69	System.err.println(" If not, point your browser to:");	3✔
70	System.err.println(" http://localhost:37373");	3✔
71	System.err.println("----------------------------------------");	3✔
72	System.err.println("");	3✔
73	}	1✔
74
75	/**
76	* Returns the home page class for the application.
77	*
78	* @return The HomePage class.
79	*/
80	public Class<HomePage> getHomePage() {
81	return HomePage.class;	2✔
82	}
83
84	/**
85	* {@inheritDoc}
86	* <p>
87	* Initializes the application settings and mounts pages.
88	*/
89	@Override
90	protected void init() {
91	super.init();	2✔
92
93	getMarkupSettings().setDefaultMarkupEncoding("UTF-8");	5✔
94
95	getExceptionSettings().setUnexpectedExceptionDisplay(ExceptionSettings.SHOW_NO_EXCEPTION_PAGE);	5✔
96
97	mountPage(ErrorPage.MOUNT_PATH, ErrorPage.class);	5✔
98	mountPage("/error/404", ErrorPage.class);	5✔
99	mountPage("/error/500", ErrorPage.class);	5✔
100
101	mountPage(UserPage.MOUNT_PATH, UserPage.class);	5✔
102	mountPage(ChannelPage.MOUNT_PATH, ChannelPage.class);	5✔
103	mountPage(SearchPage.MOUNT_PATH, SearchPage.class);	5✔
104	mountPage(ExplorePage.MOUNT_PATH, ExplorePage.class);	5✔
105	mountPage(ReferenceTablePage.MOUNT_PATH, ReferenceTablePage.class);	5✔
106	mountPage(PublishPage.MOUNT_PATH, PublishPage.class);	5✔
107	mountPage(PublishConfirmPage.MOUNT_PATH, PublishConfirmPage.class);	5✔
108	mountPage(ProfilePage.MOUNT_PATH, ProfilePage.class);	5✔
109	mountPage(UserListPage.MOUNT_PATH, UserListPage.class);	5✔
110	mountPage(GroupDemoPage.MOUNT_PATH, GroupDemoPage.class);	5✔
111	mountPage(GroupDemoPageSoc.MOUNT_PATH, GroupDemoPageSoc.class);	5✔
112	mountPage(OrcidLinkingPage.MOUNT_PATH, OrcidLinkingPage.class);	5✔
113	mountPage(OrcidLoginPage.MOUNT_PATH, OrcidLoginPage.class);	5✔
114	mountPage(ConnectorListPage.MOUNT_PATH, ConnectorListPage.class);	5✔
115	mountPage(MyChannelPage.MOUNT_PATH, MyChannelPage.class);	5✔
116	mountPage(TermForwarder.MOUNT_PATH, TermForwarder.class);	5✔
117	mountPage(ViewPage.MOUNT_PATH, ViewPage.class);	5✔
118	mountPage(GetViewPage.MOUNT_PATH, GetViewPage.class);	5✔
119	mountPage(DsOverviewPage.MOUNT_PATH, DsOverviewPage.class);	5✔
120	mountPage(DsNanopubPage.MOUNT_PATH, DsNanopubPage.class);	5✔
121	mountPage(RioOverviewPage.MOUNT_PATH, RioOverviewPage.class);	5✔
122	mountPage(RioNanopubPage.MOUNT_PATH, RioNanopubPage.class);	5✔
123	mountPage(BdjOverviewPage.MOUNT_PATH, BdjOverviewPage.class);	5✔
124	mountPage(BdjNanopubPage.MOUNT_PATH, BdjNanopubPage.class);	5✔
125	mountPage(FdoForwarder.MOUNT_PATH, FdoForwarder.class);	5✔
126	mountPage(GetNamePage.MOUNT_PATH, GetNamePage.class);	5✔
127	mountPage(TypePage.MOUNT_PATH, TypePage.class);	5✔
128	mountPage(TestPage.MOUNT_PATH, TestPage.class);	5✔
129	mountPage(ThingListPage.MOUNT_PATH, ThingListPage.class);	5✔
130	mountPage(ResultTablePage.MOUNT_PATH, ResultTablePage.class);	5✔
131	mountPage(GenOverviewPage.MOUNT_PATH, GenOverviewPage.class);	5✔
132	mountPage(GenSelectPage.MOUNT_PATH, GenSelectPage.class);	5✔
133	mountPage(GenPublishPage.MOUNT_PATH, GenPublishPage.class);	5✔
134	mountPage(GenConnectPage.MOUNT_PATH, GenConnectPage.class);	5✔
135	mountPage(GenNanopubPage.MOUNT_PATH, GenNanopubPage.class);	5✔
136	mountPage(ProjectPage.MOUNT_PATH, ProjectPage.class);	5✔
137	mountPage(QueryPage.MOUNT_PATH, QueryPage.class);	5✔
138	mountPage(QueryListPage.MOUNT_PATH, QueryListPage.class);	5✔
139
140	getCspSettings().blocking().disabled();	5✔
141	}	1✔
142
143	/**
144	* {@inheritDoc}
145	* <p>
146	* Returns the runtime configuration type for the application.
147	*/
148	@Override
149	public RuntimeConfigurationType getConfigurationType() {
150	return RuntimeConfigurationType.DEPLOYMENT;	2✔
151	}
152
153
154	private static String latestVersion = null;	2✔
155
156	/**
157	* Retrieves the latest version of the application from the GitHub API.
158	*
159	* @return The latest version as a string.
160	*/
161	public static String getLatestVersion() {
162	if (latestVersion != null) return latestVersion;	4✔
163	try (CloseableHttpClient client = HttpClientBuilder.create().build()) {	3✔
164	HttpResponse resp = client.execute(new HttpGet(LATEST_RELEASE_URL));	7✔
165	int c = resp.getStatusLine().getStatusCode();	4✔
166	if (c < 200 \|\| c >= 300) throw new RuntimeException("HTTP error: " + c);	6!
167	try (BufferedReader reader = new BufferedReader(new InputStreamReader(resp.getEntity().getContent()))) {	10✔
168	while (reader.ready()) {	3!
169	String line = reader.readLine();	3✔
170	// TODO: Do proper JSON parsing
171	if (line.matches(".\"tag_name\":\\s\"nanodash-[0-9]+\\.[0-9]+\".*")) {	4!
172	latestVersion = line.replaceFirst(".?\"tag_name\":\\s\"nanodash-([0-9]+\\.[0-9]+)\".*", "$1");	5✔
173	break;	1✔
174	}
175	}	×
176	}
177	} catch (Exception ex) {	×
178	logger.error("Error in fetching latest version", ex);	×
179	}	1✔
180	return latestVersion;	2✔
181	}
182
183	/**
184	* Properties object to hold application properties.
185	*/
186	public final static Properties properties = new Properties();	4✔
187
188	static {
189	try {
190	properties.load(WicketApplication.class.getClassLoader().getResourceAsStream("nanodash.properties"));	6✔
191	} catch (IOException ex) {	×
192	logger.error("Error in loading properties", ex);	×
193	}	1✔
194	}	1✔
195
196	/**
197	* Retrieves the current version of the application.
198	*
199	* @return The current version as a string.
200	*/
201	public static String getThisVersion() {
202	return properties.getProperty("nanodash.version");	4✔
203	}
204
205	/**
206	* {@inheritDoc}
207	*/
208	@Override
209	public Session newSession(Request request, Response response) {
210	return new NanodashSession(request);	5✔
211	}
212
213	}

knowledgepixels / nanodash / 17380144000

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