17302137193

Committed 28 Aug 2025 04:35PM UTC coverage: 11.965% (-0.4%) from 12.355%

Build # 17302137193

Build Type

Pull #244

github

Committed by

web-flow

Commit Message

Merge 4e969b0ee into 3323a35f1

Pull Request Pull Request #244: Use vocabularies with latest version of `nanopub-java`

Run Details

331 of 3840 branches covered (8.62%)

Branch coverage included in aggregate %.

943 of 6808 relevant lines covered (13.85%)

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0.0

src/main/java/com/knowledgepixels/nanodash/page/ProjectPage.java

package com.knowledgepixels.nanodash.page;

import com.knowledgepixels.nanodash.QueryApiAccess;
import com.knowledgepixels.nanodash.Utils;
import com.knowledgepixels.nanodash.component.QueryResultTable;
import com.knowledgepixels.nanodash.component.TemplateResults;
import com.knowledgepixels.nanodash.component.TitleBar;
import com.knowledgepixels.nanodash.component.UserList;
import com.knowledgepixels.nanodash.template.Template;
import com.knowledgepixels.nanodash.template.TemplateData;
import org.apache.commons.lang3.tuple.Pair;
import org.apache.wicket.markup.html.basic.Label;
import org.apache.wicket.markup.html.link.BookmarkablePageLink;
import org.apache.wicket.markup.html.link.ExternalLink;
import org.apache.wicket.markup.repeater.Item;
import org.apache.wicket.markup.repeater.data.DataView;
import org.apache.wicket.markup.repeater.data.ListDataProvider;
import org.apache.wicket.request.mapper.parameter.PageParameters;
import org.eclipse.rdf4j.model.IRI;
import org.eclipse.rdf4j.model.Literal;
import org.eclipse.rdf4j.model.Statement;
import org.eclipse.rdf4j.model.vocabulary.DCTERMS;
import org.eclipse.rdf4j.model.vocabulary.RDFS;
import org.nanopub.Nanopub;
import org.nanopub.extra.services.ApiResponse;
import org.nanopub.extra.services.FailedApiCallException;
import org.nanopub.vocabulary.NTEMPLATE;

import java.util.*;

import static com.knowledgepixels.nanodash.Utils.vf;

/**
 * The ProjectPage class represents a project page in the Nanodash application.
 */
public class ProjectPage extends NanodashPage {

    private static final long serialVersionUID = 1L;

    /**
     * The mount path for this page.
     */
    public static final String MOUNT_PATH = "/project";

    /**
     * {@inheritDoc}
     */
    @Override
    public String getMountPath() {
        return MOUNT_PATH;
    }

    /**
     * The predicate for the owner of the project.
     */
    public static final IRI HAS_OWNER = vf.createIRI("https://w3id.org/kpxl/gen/terms/hasOwner");

    /**
     * The predicate for pinned templates in the project.
     */
    public static final IRI HAS_PINNED_TEMPLATE = vf.createIRI("https://w3id.org/kpxl/gen/terms/hasPinnedTemplate");

    /**
     * The predicate for pinned queries in the project.
     */
    public static final IRI HAS_PINNED_QUERY = vf.createIRI("https://w3id.org/kpxl/gen/terms/hasPinnedQuery");

    /**
     * Constructor for the ProjectPage.
     *
     * @param parameters the page parameters
     * @throws org.nanopub.extra.services.FailedApiCallException if the API call fails
     */
    public ProjectPage(final PageParameters parameters) throws FailedApiCallException {
        super(parameters);

        String id = parameters.get("id").toString();
        ApiResponse resp = QueryApiAccess.get("get-introducing-np", "thing", id);
        String npId = resp.getData().get(0).get("np");
        Nanopub np = Utils.getAsNanopub(npId);

        add(new TitleBar("titlebar", this, null));
        String label = id.replaceFirst("^.*/", "");

        String description = null;
        List<IRI> owners = new ArrayList<>();
        List<Template> templates = new ArrayList<>();
        Set<String> templateTags = new HashSet<>();
        Map<String, List<Template>> templatesPerTag = new HashMap<>();
        List<IRI> queryIds = new ArrayList<>();
        IRI defaultProvenance = null;

        for (Statement st : np.getAssertion()) {
            if (st.getSubject().stringValue().equals(id)) {
                if (st.getPredicate().equals(DCTERMS.DESCRIPTION)) {
                    description = st.getObject().stringValue();
                } else if (st.getPredicate().equals(RDFS.LABEL)) {
                    label = st.getObject().stringValue();
                } else if (st.getPredicate().equals(HAS_OWNER) && st.getObject() instanceof IRI obj) {
                    owners.add(obj);
                } else if (st.getPredicate().equals(HAS_PINNED_TEMPLATE) && st.getObject() instanceof IRI obj) {
                    templates.add(TemplateData.get().getTemplate(obj.stringValue()));
                } else if (st.getPredicate().equals(HAS_PINNED_QUERY) && st.getObject() instanceof IRI obj) {
                    queryIds.add(obj);
                } else if (st.getPredicate().equals(NTEMPLATE.HAS_DEFAULT_PROVENANCE) && st.getObject() instanceof IRI obj) {
                    defaultProvenance = obj;
                }
            } else if (st.getPredicate().equals(NTEMPLATE.HAS_TAG) && st.getObject() instanceof Literal l) {
                templateTags.add(l.stringValue());
                List<Template> list = templatesPerTag.get(l.stringValue());
                if (list == null) {
                    list = new ArrayList<>();
                    templatesPerTag.put(l.stringValue(), list);
                }
                list.add(TemplateData.get().getTemplate(st.getSubject().stringValue()));
            }
        }

        add(new Label("pagetitle", label + " (project) | nanodash"));
        add(new Label("projectname", label));
        add(new ExternalLink("id", id, id));
        add(new BookmarkablePageLink<Void>("np", ExplorePage.class, new PageParameters().add("id", np.getUri())));
        add(new Label("description", "<span class=\"internal\">" + Utils.sanitizeHtml(description) + "</span>").setEscapeModelStrings(false));

        final PageParameters params = new PageParameters();
        if (defaultProvenance != null) {
            params.add("prtemplate", defaultProvenance.stringValue());
        }
        List<Pair<String, List<Template>>> templateLists = new ArrayList<>();
        List<String> templateTagList = new ArrayList<>(templateTags);
        Collections.sort(templateTagList);
        for (String tag : templateTagList) {
            for (Template t : templatesPerTag.get(tag)) {
                if (templates.contains(t)) templates.remove(t);
            }
            templateLists.add(Pair.of(tag, templatesPerTag.get(tag)));
        }
        if (!templates.isEmpty()) {
            String l = templateLists.isEmpty() ? "Templates" : "Other Templates";
            templateLists.add(Pair.of(l, templates));
        }
        add(new DataView<Pair<String, List<Template>>>("template-lists", new ListDataProvider<Pair<String, List<Template>>>(templateLists)) {

            private static final long serialVersionUID = 1L;

            @Override
            protected void populateItem(Item<Pair<String, List<Template>>> item) {
                item.add(new Label("label", item.getModelObject().getLeft()));
                item.add(TemplateResults.fromList("templates", item.getModelObject().getRight(), params));
            }

        });
        add(TemplateResults.fromList("templates", templates, params));
        add(new UserList("owners", owners));

        add(new DataView<IRI>("queries", new ListDataProvider<IRI>(queryIds)) {

            private static final long serialVersionUID = 1L;

            @Override
            protected void populateItem(Item<IRI> item) {
                String queryId = QueryApiAccess.getQueryId(item.getModelObject());
                item.add(QueryResultTable.createComponent("query", queryId, false));
            }

        });
    }

    /**
     * Checks if auto-refresh is enabled for this page.
     *
     * @return true if auto-refresh is enabled, false otherwise
     */
    protected boolean hasAutoRefreshEnabled() {
        return true;
    }

}

1	package com.knowledgepixels.nanodash.page;
2
3	import com.knowledgepixels.nanodash.QueryApiAccess;
4	import com.knowledgepixels.nanodash.Utils;
5	import com.knowledgepixels.nanodash.component.QueryResultTable;
6	import com.knowledgepixels.nanodash.component.TemplateResults;
7	import com.knowledgepixels.nanodash.component.TitleBar;
8	import com.knowledgepixels.nanodash.component.UserList;
9	import com.knowledgepixels.nanodash.template.Template;
10	import com.knowledgepixels.nanodash.template.TemplateData;
11	import org.apache.commons.lang3.tuple.Pair;
12	import org.apache.wicket.markup.html.basic.Label;
13	import org.apache.wicket.markup.html.link.BookmarkablePageLink;
14	import org.apache.wicket.markup.html.link.ExternalLink;
15	import org.apache.wicket.markup.repeater.Item;
16	import org.apache.wicket.markup.repeater.data.DataView;
17	import org.apache.wicket.markup.repeater.data.ListDataProvider;
18	import org.apache.wicket.request.mapper.parameter.PageParameters;
19	import org.eclipse.rdf4j.model.IRI;
20	import org.eclipse.rdf4j.model.Literal;
21	import org.eclipse.rdf4j.model.Statement;
22	import org.eclipse.rdf4j.model.vocabulary.DCTERMS;
23	import org.eclipse.rdf4j.model.vocabulary.RDFS;
24	import org.nanopub.Nanopub;
25	import org.nanopub.extra.services.ApiResponse;
26	import org.nanopub.extra.services.FailedApiCallException;
27	import org.nanopub.vocabulary.NTEMPLATE;
28
29	import java.util.*;
30
31	import static com.knowledgepixels.nanodash.Utils.vf;
32
33	/**
34	* The ProjectPage class represents a project page in the Nanodash application.
35	*/
36	public class ProjectPage extends NanodashPage {
37
38	private static final long serialVersionUID = 1L;
39
40	/**
41	* The mount path for this page.
42	*/
43	public static final String MOUNT_PATH = "/project";
44
45	/**
46	* {@inheritDoc}
47	*/
48	@Override
49	public String getMountPath() {
50	return MOUNT_PATH;	×
51	}
52
53	/**
54	* The predicate for the owner of the project.
55	*/
56	public static final IRI HAS_OWNER = vf.createIRI("https://w3id.org/kpxl/gen/terms/hasOwner");	×
57
58	/**
59	* The predicate for pinned templates in the project.
60	*/
61	public static final IRI HAS_PINNED_TEMPLATE = vf.createIRI("https://w3id.org/kpxl/gen/terms/hasPinnedTemplate");	×
62
63	/**
64	* The predicate for pinned queries in the project.
65	*/
66	public static final IRI HAS_PINNED_QUERY = vf.createIRI("https://w3id.org/kpxl/gen/terms/hasPinnedQuery");	×
67
68	/**
69	* Constructor for the ProjectPage.
70	*
71	* @param parameters the page parameters
72	* @throws org.nanopub.extra.services.FailedApiCallException if the API call fails
73	*/
74	public ProjectPage(final PageParameters parameters) throws FailedApiCallException {
75	super(parameters);	×
76
77	String id = parameters.get("id").toString();	×
78	ApiResponse resp = QueryApiAccess.get("get-introducing-np", "thing", id);	×
79	String npId = resp.getData().get(0).get("np");	×
80	Nanopub np = Utils.getAsNanopub(npId);	×
81
82	add(new TitleBar("titlebar", this, null));	×
83	String label = id.replaceFirst("^.*/", "");	×
84
85	String description = null;	×
86	List<IRI> owners = new ArrayList<>();	×
87	List<Template> templates = new ArrayList<>();	×
88	Set<String> templateTags = new HashSet<>();	×
89	Map<String, List<Template>> templatesPerTag = new HashMap<>();	×
90	List<IRI> queryIds = new ArrayList<>();	×
91	IRI defaultProvenance = null;	×
92
93	for (Statement st : np.getAssertion()) {	×
94	if (st.getSubject().stringValue().equals(id)) {	×
95	if (st.getPredicate().equals(DCTERMS.DESCRIPTION)) {	×
96	description = st.getObject().stringValue();	×
97	} else if (st.getPredicate().equals(RDFS.LABEL)) {	×
98	label = st.getObject().stringValue();	×
99	} else if (st.getPredicate().equals(HAS_OWNER) && st.getObject() instanceof IRI obj) {	×
100	owners.add(obj);	×
101	} else if (st.getPredicate().equals(HAS_PINNED_TEMPLATE) && st.getObject() instanceof IRI obj) {	×
102	templates.add(TemplateData.get().getTemplate(obj.stringValue()));	×
103	} else if (st.getPredicate().equals(HAS_PINNED_QUERY) && st.getObject() instanceof IRI obj) {	×
104	queryIds.add(obj);	×
105	} else if (st.getPredicate().equals(NTEMPLATE.HAS_DEFAULT_PROVENANCE) && st.getObject() instanceof IRI obj) {	×
106	defaultProvenance = obj;	×
107	}
108	} else if (st.getPredicate().equals(NTEMPLATE.HAS_TAG) && st.getObject() instanceof Literal l) {	×
109	templateTags.add(l.stringValue());	×
110	List<Template> list = templatesPerTag.get(l.stringValue());	×
111	if (list == null) {	×
112	list = new ArrayList<>();	×
113	templatesPerTag.put(l.stringValue(), list);	×
114	}
115	list.add(TemplateData.get().getTemplate(st.getSubject().stringValue()));	×
116	}
117	}	×
118
119	add(new Label("pagetitle", label + " (project) \| nanodash"));	×
120	add(new Label("projectname", label));	×
121	add(new ExternalLink("id", id, id));	×
122	add(new BookmarkablePageLink<Void>("np", ExplorePage.class, new PageParameters().add("id", np.getUri())));	×
123	add(new Label("description", "<span class=\"internal\">" + Utils.sanitizeHtml(description) + "</span>").setEscapeModelStrings(false));	×
124
125	final PageParameters params = new PageParameters();	×
126	if (defaultProvenance != null) {	×
127	params.add("prtemplate", defaultProvenance.stringValue());	×
128	}
129	List<Pair<String, List<Template>>> templateLists = new ArrayList<>();	×
130	List<String> templateTagList = new ArrayList<>(templateTags);	×
131	Collections.sort(templateTagList);	×
132	for (String tag : templateTagList) {	×
133	for (Template t : templatesPerTag.get(tag)) {	×
134	if (templates.contains(t)) templates.remove(t);	×
135	}	×
136	templateLists.add(Pair.of(tag, templatesPerTag.get(tag)));	×
137	}	×
138	if (!templates.isEmpty()) {	×
139	String l = templateLists.isEmpty() ? "Templates" : "Other Templates";	×
140	templateLists.add(Pair.of(l, templates));	×
141	}
142	add(new DataView<Pair<String, List<Template>>>("template-lists", new ListDataProvider<Pair<String, List<Template>>>(templateLists)) {	×
143
144	private static final long serialVersionUID = 1L;
145
146	@Override
147	protected void populateItem(Item<Pair<String, List<Template>>> item) {
148	item.add(new Label("label", item.getModelObject().getLeft()));	×
149	item.add(TemplateResults.fromList("templates", item.getModelObject().getRight(), params));	×
150	}	×
151
152	});
153	add(TemplateResults.fromList("templates", templates, params));	×
154	add(new UserList("owners", owners));	×
155
156	add(new DataView<IRI>("queries", new ListDataProvider<IRI>(queryIds)) {	×
157
158	private static final long serialVersionUID = 1L;
159
160	@Override
161	protected void populateItem(Item<IRI> item) {
162	String queryId = QueryApiAccess.getQueryId(item.getModelObject());	×
163	item.add(QueryResultTable.createComponent("query", queryId, false));	×
164	}	×
165
166	});
167	}	×
168
169	/**
170	* Checks if auto-refresh is enabled for this page.
171	*
172	* @return true if auto-refresh is enabled, false otherwise
173	*/
174	protected boolean hasAutoRefreshEnabled() {
175	return true;	×
176	}
177
178	}

knowledgepixels / nanodash / 17302137193

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