17302137193

Committed 28 Aug 2025 04:35PM UTC coverage: 11.965% (-0.4%) from 12.355%

Build # 17302137193

Build Type

Pull #244

github

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web-flow

Commit Message

Merge 4e969b0ee into 3323a35f1

Pull Request Pull Request #244: Use vocabularies with latest version of `nanopub-java`

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src/main/java/com/knowledgepixels/nanodash/component/ReadonlyItem.java

package com.knowledgepixels.nanodash.component;

import com.knowledgepixels.nanodash.RestrictedChoice;
import com.knowledgepixels.nanodash.User;
import com.knowledgepixels.nanodash.Utils;
import com.knowledgepixels.nanodash.component.StatementItem.RepetitionGroup;
import com.knowledgepixels.nanodash.page.ExplorePage;
import com.knowledgepixels.nanodash.page.UserPage;
import com.knowledgepixels.nanodash.template.ContextType;
import com.knowledgepixels.nanodash.template.Template;
import com.knowledgepixels.nanodash.template.TemplateContext;
import com.knowledgepixels.nanodash.template.UnificationException;
import net.trustyuri.TrustyUriUtils;
import org.apache.commons.codec.Charsets;
import org.apache.wicket.behavior.AttributeAppender;
import org.apache.wicket.markup.html.basic.Label;
import org.apache.wicket.markup.html.link.ExternalLink;
import org.apache.wicket.markup.html.panel.Panel;
import org.apache.wicket.model.IModel;
import org.apache.wicket.model.Model;
import org.apache.wicket.validation.IValidatable;
import org.apache.wicket.validation.IValidator;
import org.apache.wicket.validation.Validatable;
import org.apache.wicket.validation.ValidationError;
import org.eclipse.rdf4j.common.net.ParsedIRI;
import org.eclipse.rdf4j.model.IRI;
import org.eclipse.rdf4j.model.Literal;
import org.eclipse.rdf4j.model.Value;
import org.eclipse.rdf4j.model.ValueFactory;
import org.eclipse.rdf4j.model.impl.SimpleValueFactory;
import org.eclipse.rdf4j.model.util.Literals;
import org.eclipse.rdf4j.model.vocabulary.XSD;
import org.nanopub.Nanopub;
import org.nanopub.SimpleCreatorPattern;
import org.nanopub.vocabulary.NTEMPLATE;

import java.net.URISyntaxException;
import java.net.URLEncoder;
import java.util.HashMap;
import java.util.Map;

/**
 * ReadonlyItem is a component that displays a read-only item in the form.
 */
public class ReadonlyItem extends Panel implements ContextComponent {

    // TODO: Make ContextComponent an abstract class with superclass Panel, and move the common code of the form items there.

    private static final long serialVersionUID = 1L;

    private IModel<String> model;
    private TemplateContext context;
    private String prefix;
    private ExternalLink linkComp;
    private Label extraComp, languageComp, datatypeComp;
    private IModel<String> extraModel, languageModel, datatypeModel;
    private IRI iri;
    private RestrictedChoice restrictedChoice;
    private final Template template;

    /**
     * Constructor for ReadonlyItem.
     *
     * @param id              the component id
     * @param parentId        the parent id (e.g., "subj", "obj")
     * @param iriP            the IRI of the item
     * @param objectPosition  whether this is an object position
     * @param statementPartId the statement part ID
     * @param rg              the repetition group
     */
    public ReadonlyItem(String id, String parentId, final IRI iriP, boolean objectPosition, IRI statementPartId, final RepetitionGroup rg) {
        super(id);
        context = rg.getContext();
        this.iri = iriP;
        template = context.getTemplate();
        model = context.getComponentModels().get(iri);
        if (model == null) {
            model = Model.of("");
            context.getComponentModels().put(iri, model);
        }
        String postfix = Utils.getUriPostfix(iri);
        if (context.hasParam(postfix)) {
            model.setObject(context.getParam(postfix));
        }

        final Map<String, String> foafNameMap;
        if (context.getExistingNanopub() == null) {
            foafNameMap = new HashMap<>();
        } else {
            foafNameMap = Utils.getFoafNameMap(context.getExistingNanopub());
        }

        prefix = template.getPrefix(iri);
        if (prefix == null) prefix = "";
        if (template.isRestrictedChoicePlaceholder(iri)) {
            restrictedChoice = new RestrictedChoice(iri, context);
        }
        add(new Label("prefix", new Model<String>() {

            private static final long serialVersionUID = 1L;

            @Override
            public String getObject() {
                String prefixLabel = template.getPrefixLabel(iri);
                String v = getFullValue();
                if (prefixLabel == null || User.isUser(v) || foafNameMap.containsKey(v)) {
                    return "";
                } else {
                    if (prefixLabel.length() > 0 && parentId.equals("subj") && !prefixLabel.matches("https?://.*")) {
                        // Capitalize first letter of label if at subject position:
                        prefixLabel = prefixLabel.substring(0, 1).toUpperCase() + prefixLabel.substring(1);
                    }
                    return prefixLabel;
                }
            }

        }));

        linkComp = new ExternalLink("link", new Model<String>() {

            private static final long serialVersionUID = 1L;

            @Override
            public String getObject() {
                String obj = getFullValue();
                if (obj == null) return "";
                if (obj.equals("local:nanopub")) {
                    if (context.getExistingNanopub() != null) {
                        obj = context.getExistingNanopub().getUri().stringValue();
                        return ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);
                    } else {
                        return "";
                    }
                } else if (obj.equals("local:assertion")) {
                    if (context.getExistingNanopub() != null) {
                        obj = context.getExistingNanopub().getAssertionUri().stringValue();
                        return ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);
                    } else {
                        return "";
                    }
                } else if (User.isUser(obj)) {
                    return UserPage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);
                } else if (obj.matches("https?://.+")) {
                    return ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);
                } else {
                    return "";
                }
            }

        }, new Model<String>() {

            private static final long serialVersionUID = 1L;

            @Override
            public String getObject() {
                String obj = getFullValue();
                if (obj != null && obj.matches("https?://.+")) {
                    IRI objIri = vf.createIRI(obj);
                    if (iri.equals(NTEMPLATE.CREATOR_PLACEHOLDER)) {
                        if (objectPosition) {
                            return "me (" + User.getShortDisplayName(objIri) + ")";
                        } else {
                            return "I (" + User.getShortDisplayName(objIri) + ")";
                        }
                    } else if (isAssertionValue(objIri)) {
                        if (context.getType() == ContextType.ASSERTION) {
                            return "this assertion";
                        } else {
                            return "the assertion above";
                        }
                    } else if (isNanopubValue(objIri)) {
                        return "this nanopublication";
                    } else if (User.isUser(obj)) {
                        return User.getShortDisplayName(objIri);
                    } else if (foafNameMap.containsKey(obj)) {
                        return foafNameMap.get(obj);
                    }
                    return getLabelString(objIri);
                }
                return obj;
            }

        });
        if (template.isIntroducedResource(iri) || template.isEmbeddedResource(iri)) {
            linkComp.add(AttributeAppender.append("class", "introduced"));
        }
        add(linkComp);
        add(new Label("description", new Model<String>() {

            private static final long serialVersionUID = 1L;

            @Override
            public String getObject() {
                String obj = getFullValue();
                if (obj != null && obj.matches("https?://.+")) {
                    IRI objIri = vf.createIRI(obj);
                    if (isAssertionValue(objIri)) {
                        return "This is the identifier for the assertion of this nanopublication.";
                    } else if (isNanopubValue(objIri)) {
                        return "This is the identifier for this whole nanopublication.";
                    } else if (context.isReadOnly() && obj.startsWith(context.getExistingNanopub().getUri().stringValue())) {
                        return "This is a local identifier minted within the nanopublication.";
                    }
                    String labelString = getLabelString(objIri);
                    String description = "";
                    if (labelString.contains(" - ")) description = labelString.replaceFirst("^.* - ", "");
                    return description;
                } else if (obj != null && obj.startsWith("\"")) {
                    return "(this is a literal)";
                }
                return "";
            }

        }));
        Model<String> uriModel = new Model<String>() {

            private static final long serialVersionUID = 1L;

            @Override
            public String getObject() {
                String obj = getFullValue();
                if (obj != null && obj.startsWith("\"")) return "";
                if (isAssertionValue(obj)) {
                    return getAssertionValue();
                } else if (isNanopubValue(obj)) {
                    return getNanopubValue();
                }
                return obj;
            }

        };
        add(Utils.getUriLink("uri", uriModel));
        extraModel = Model.of("");
        extraComp = new Label("extra", extraModel);
        extraComp.setVisible(false);
        add(extraComp);
        languageModel = Model.of("");
        languageComp = new Label("language", languageModel);
        languageComp.setVisible(false);
        add(languageComp);
        datatypeModel = Model.of("");
        datatypeComp = new Label("datatype", datatypeModel);
        datatypeComp.setVisible(false);
        add(datatypeComp);
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public void fillFinished() {
        String obj = getFullValue();
        if (obj != null) {
            if (isAssertionValue(obj)) {
                linkComp.add(new AttributeAppender("class", "this-assertion"));
            } else if (isNanopubValue(obj)) {
                linkComp.add(new AttributeAppender("class", "this-nanopub"));
            } else if (context.getExistingNanopub() != null) {
                Nanopub np = context.getExistingNanopub();
                if (Utils.getIntroducedIriIds(np).contains(obj) || Utils.getEmbeddedIriIds(np).contains(obj)) {
                    linkComp.add(AttributeAppender.append("class", "introduced"));
                }
            }
        }
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public void finalizeValues() {
    }

    private String getLabelString(IRI iri) {
        if (template.getLabel(iri) != null) {
            return template.getLabel(iri).replaceFirst(" - .*$", "");
        } else if (context.getLabel(iri) != null) {
            return context.getLabel(iri).replaceFirst(" - .*$", "");
        } else {
            return IriItem.getShortNameFromURI(iri.stringValue());
        }
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public void removeFromContext() {
        // Nothing to be done here.
    }

    private String getFullValue() {
        String s = model.getObject();
        if (s == null) return null;
        if (template.isAutoEscapePlaceholder(iri)) {
            s = Utils.urlEncode(s);
        }
        if (!prefix.isEmpty()) {
            s = prefix + s;
        }
        return s;
    }

    private boolean isNanopubValue(Object obj) {
        if (obj == null) return false;
        if (obj.toString().equals("local:nanopub")) return true;
        if (context.getExistingNanopub() == null) return false;
        return obj.toString().equals(context.getExistingNanopub().getUri().stringValue());
    }

    private String getNanopubValue() {
        if (context.getExistingNanopub() != null) {
            return context.getExistingNanopub().getUri().stringValue();
        } else {
            return "local:nanopub";
        }
    }

    private boolean isAssertionValue(Object obj) {
        if (obj == null) return false;
        if (obj.toString().equals("local:assertion")) return true;
        if (context.getExistingNanopub() == null) return false;
        return obj.toString().equals(context.getExistingNanopub().getAssertionUri().stringValue());
    }

    private String getAssertionValue() {
        if (context.getExistingNanopub() != null) {
            return context.getExistingNanopub().getAssertionUri().stringValue();
        } else {
            return "local:assertion";
        }
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public boolean isUnifiableWith(Value v) {
        if (v == null) return true;
        if (v instanceof IRI) {
            String vs = v.stringValue();
            if (vs.equals("local:nanopub")) {
                vs = getNanopubValue();
            } else if (vs.equals("local:assertion")) {
                vs = getAssertionValue();
            }
            if (vs.startsWith(prefix)) vs = vs.substring(prefix.length());
//                        if (vs.startsWith("local:")) vs = vs.replaceFirst("^local:", "");
            if (template.isAutoEscapePlaceholder(iri)) {
                vs = Utils.urlDecode(vs);
            }
            Validatable<String> validatable = new Validatable<>(vs);
//                        if (template.isLocalResource(iri) && !Utils.isUriPostfix(vs)) {
//                                vs = Utils.getUriPostfix(vs);
//                        }
            new Validator().validate(validatable);
            if (!validatable.isValid()) {
                return false;
            }
            if (model.getObject().isEmpty()) {
                return true;
            }
            return vs.equals(model.getObject());
        } else if (v instanceof Literal vL) {
            if (template.getRegex(iri) != null && !v.stringValue().matches(template.getRegex(iri))) {
                return false;
            }
            String languagetag = template.getLanguageTag(iri);
            IRI datatype = template.getDatatype(iri);
            if (languagetag != null) {
                if (!vL.getLanguage().isPresent() || !Literals.normalizeLanguageTag(vL.getLanguage().get()).equals(languagetag)) {
                    return false;
                }
            } else if (datatype != null) {
                if (!vL.getDatatype().equals(datatype)) {
                    return false;
                }
            }
            if (linkComp.getDefaultModelObject() == null || linkComp.getDefaultModelObject().toString().isEmpty()) {
                return true;
            }
            return linkComp.getDefaultModelObject().equals("\"" + v.stringValue() + "\"");
        }
        return false;
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public void unifyWith(Value v) throws UnificationException {
        if (v == null) return;
        String vs = v.stringValue();
        if (!isUnifiableWith(v)) throw new UnificationException(vs);
        if (v instanceof IRI) {
            if (vs.equals("local:nanopub")) {
                vs = getNanopubValue();
            } else if (vs.equals("local:assertion")) {
                vs = getAssertionValue();
            }
            if (!prefix.isEmpty() && vs.startsWith(prefix)) {
                vs = vs.substring(prefix.length());
                // With read-only items, we don't need preliminary local identifiers:
//                        } else if (vs.startsWith("local:")) {
//                                vs = vs.replaceFirst("^local:", "");
//                        } else if (template.isLocalResource(iri) && !Utils.isUriPostfix(vs)) {
//                                vs = Utils.getUriPostfix(vs);
            }
            if (template.isAutoEscapePlaceholder(iri)) {
                vs = Utils.urlDecode(vs);
            }
            model.setObject(vs);
        } else if (v instanceof Literal vL) {
            if (vL.getLanguage().isPresent()) {
                model.setObject("\"" + vs + "\"");
                languageModel.setObject("(" + Literals.normalizeLanguageTag(vL.getLanguage().get()) + ")");
                languageComp.setVisible(true);
            } else if (!vL.getDatatype().equals(XSD.STRING)) {
                model.setObject("\"" + vs + "\"");
                datatypeModel.setObject("(" + vL.getDatatype().stringValue().replace(XSD.NAMESPACE, "xsd:") + ")");
                datatypeComp.setVisible(true);
            } else {
                model.setObject("\"" + vs + "\"");
            }
            // TODO Didn't manage to encode this into a working regex:
            if (vs.startsWith("<p>") || vs.startsWith("<p ") || vs.startsWith("<div>") || vs.startsWith("<div ") || vs.startsWith("<span>") || vs.startsWith("<span ") || vs.startsWith("<img ")) {
                linkComp.setVisible(false);
                extraModel.setObject("<span class=\"internal\">" + Utils.sanitizeHtml(vs) + "</span>");
                extraComp.setEscapeModelStrings(false);
                extraComp.setVisible(true);
            }
        }
    }


    protected class Validator extends InvalidityHighlighting implements IValidator<String> {

        private static final long serialVersionUID = 1L;

        /**
         * Default constructor for Validator.
         */
        public Validator() {
        }

        @Override
        public void validate(IValidatable<String> s) {
            String sv = s.getValue();
            String p = prefix;
            if (template.isAutoEscapePlaceholder(iri)) {
                sv = Utils.urlEncode(sv);
            }
            if (sv.matches("https?://.+")) {
                p = "";
            } else if (sv.contains(":")) {
                s.error(new ValidationError("Colon character is not allowed in postfix"));
            }
            String iriString = p + sv;
            if (iriString.matches("[^:# ]+")) {
                p = "local:";
                iriString = p + sv;
            }
            try {
                ParsedIRI piri = new ParsedIRI(iriString);
                if (!piri.isAbsolute()) {
                    s.error(new ValidationError("IRI not well-formed"));
                }
                if (p.isEmpty() && !sv.startsWith("local:") && !sv.matches("https?://.+")) {
                    s.error(new ValidationError("Only http(s):// IRIs are allowed here"));
                }
            } catch (URISyntaxException ex) {
                s.error(new ValidationError("IRI not well-formed"));
            }
            String regex = template.getRegex(iri);
            if (regex != null) {
                if (!sv.matches(regex)) {
                    s.error(new ValidationError("Value '" + sv + "' doesn't match the pattern '" + regex + "'"));
                }
            }
            if (template.isRestrictedChoicePlaceholder(iri)) {
                if (!restrictedChoice.getPossibleValues().contains(iriString) && !restrictedChoice.hasPossibleRefValues()) {
                    // not checking the possible ref values can overgenerate, but normally works
                    s.error(new ValidationError("Invalid choice"));
                }
            }
            if (template.isExternalUriPlaceholder(iri)) {
                if (!iriString.matches("https?://.+")) {
                    s.error(new ValidationError("Not an external IRI"));
                }
            }
            if (template.isTrustyUriPlaceholder(iri)) {
                if (!TrustyUriUtils.isPotentialTrustyUri(iriString)) {
                    s.error(new ValidationError("Not a trusty URI"));
                }
            }
            if (iri.equals(NTEMPLATE.CREATOR_PLACEHOLDER) && context.getExistingNanopub() != null) {
                boolean found = false;
                for (IRI creator : SimpleCreatorPattern.getCreators(context.getExistingNanopub())) {
                    if (creator.stringValue().equals(iriString)) {
                        found = true;
                        break;
                    }
                }
                if (!found) {
                    s.error(new ValidationError("Not a creator of nanopub"));
                }
            }
        }

    }

    /**
     * <p>toString.</p>
     *
     * @return a {@link java.lang.String} object
     */
    public String toString() {
        return "[read-only IRI item: " + iri + "]";
    }

    static final ValueFactory vf = SimpleValueFactory.getInstance();

}

1	package com.knowledgepixels.nanodash.component;
2
3	import com.knowledgepixels.nanodash.RestrictedChoice;
4	import com.knowledgepixels.nanodash.User;
5	import com.knowledgepixels.nanodash.Utils;
6	import com.knowledgepixels.nanodash.component.StatementItem.RepetitionGroup;
7	import com.knowledgepixels.nanodash.page.ExplorePage;
8	import com.knowledgepixels.nanodash.page.UserPage;
9	import com.knowledgepixels.nanodash.template.ContextType;
10	import com.knowledgepixels.nanodash.template.Template;
11	import com.knowledgepixels.nanodash.template.TemplateContext;
12	import com.knowledgepixels.nanodash.template.UnificationException;
13	import net.trustyuri.TrustyUriUtils;
14	import org.apache.commons.codec.Charsets;
15	import org.apache.wicket.behavior.AttributeAppender;
16	import org.apache.wicket.markup.html.basic.Label;
17	import org.apache.wicket.markup.html.link.ExternalLink;
18	import org.apache.wicket.markup.html.panel.Panel;
19	import org.apache.wicket.model.IModel;
20	import org.apache.wicket.model.Model;
21	import org.apache.wicket.validation.IValidatable;
22	import org.apache.wicket.validation.IValidator;
23	import org.apache.wicket.validation.Validatable;
24	import org.apache.wicket.validation.ValidationError;
25	import org.eclipse.rdf4j.common.net.ParsedIRI;
26	import org.eclipse.rdf4j.model.IRI;
27	import org.eclipse.rdf4j.model.Literal;
28	import org.eclipse.rdf4j.model.Value;
29	import org.eclipse.rdf4j.model.ValueFactory;
30	import org.eclipse.rdf4j.model.impl.SimpleValueFactory;
31	import org.eclipse.rdf4j.model.util.Literals;
32	import org.eclipse.rdf4j.model.vocabulary.XSD;
33	import org.nanopub.Nanopub;
34	import org.nanopub.SimpleCreatorPattern;
35	import org.nanopub.vocabulary.NTEMPLATE;
36
37	import java.net.URISyntaxException;
38	import java.net.URLEncoder;
39	import java.util.HashMap;
40	import java.util.Map;
41
42	/**
43	* ReadonlyItem is a component that displays a read-only item in the form.
44	*/
45	public class ReadonlyItem extends Panel implements ContextComponent {
46
47	// TODO: Make ContextComponent an abstract class with superclass Panel, and move the common code of the form items there.
48
49	private static final long serialVersionUID = 1L;
50
51	private IModel<String> model;
52	private TemplateContext context;
53	private String prefix;
54	private ExternalLink linkComp;
55	private Label extraComp, languageComp, datatypeComp;
56	private IModel<String> extraModel, languageModel, datatypeModel;
57	private IRI iri;
58	private RestrictedChoice restrictedChoice;
59	private final Template template;
60
61	/**
62	* Constructor for ReadonlyItem.
63	*
64	* @param id the component id
65	* @param parentId the parent id (e.g., "subj", "obj")
66	* @param iriP the IRI of the item
67	* @param objectPosition whether this is an object position
68	* @param statementPartId the statement part ID
69	* @param rg the repetition group
70	*/
71	public ReadonlyItem(String id, String parentId, final IRI iriP, boolean objectPosition, IRI statementPartId, final RepetitionGroup rg) {
72	super(id);	×
73	context = rg.getContext();	×
74	this.iri = iriP;	×
75	template = context.getTemplate();	×
76	model = context.getComponentModels().get(iri);	×
77	if (model == null) {	×
78	model = Model.of("");	×
79	context.getComponentModels().put(iri, model);	×
80	}
81	String postfix = Utils.getUriPostfix(iri);	×
82	if (context.hasParam(postfix)) {	×
83	model.setObject(context.getParam(postfix));	×
84	}
85
86	final Map<String, String> foafNameMap;
87	if (context.getExistingNanopub() == null) {	×
88	foafNameMap = new HashMap<>();	×
89	} else {
90	foafNameMap = Utils.getFoafNameMap(context.getExistingNanopub());	×
91	}
92
93	prefix = template.getPrefix(iri);	×
94	if (prefix == null) prefix = "";	×
95	if (template.isRestrictedChoicePlaceholder(iri)) {	×
96	restrictedChoice = new RestrictedChoice(iri, context);	×
97	}
98	add(new Label("prefix", new Model<String>() {	×
99
100	private static final long serialVersionUID = 1L;
101
102	@Override
103	public String getObject() {
104	String prefixLabel = template.getPrefixLabel(iri);	×
105	String v = getFullValue();	×
106	if (prefixLabel == null \|\| User.isUser(v) \|\| foafNameMap.containsKey(v)) {	×
107	return "";	×
108	} else {
109	if (prefixLabel.length() > 0 && parentId.equals("subj") && !prefixLabel.matches("https?://.*")) {	×
110	// Capitalize first letter of label if at subject position:
111	prefixLabel = prefixLabel.substring(0, 1).toUpperCase() + prefixLabel.substring(1);	×
112	}
113	return prefixLabel;	×
114	}
115	}
116
117	}));
118
119	linkComp = new ExternalLink("link", new Model<String>() {	×
120
121	private static final long serialVersionUID = 1L;
122
123	@Override
124	public String getObject() {
125	String obj = getFullValue();	×
126	if (obj == null) return "";	×
127	if (obj.equals("local:nanopub")) {	×
128	if (context.getExistingNanopub() != null) {	×
129	obj = context.getExistingNanopub().getUri().stringValue();	×
130	return ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);	×
131	} else {
132	return "";	×
133	}
134	} else if (obj.equals("local:assertion")) {	×
135	if (context.getExistingNanopub() != null) {	×
136	obj = context.getExistingNanopub().getAssertionUri().stringValue();	×
137	return ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);	×
138	} else {
139	return "";	×
140	}
141	} else if (User.isUser(obj)) {	×
142	return UserPage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);	×
143	} else if (obj.matches("https?://.+")) {	×
144	return ExplorePage.MOUNT_PATH + "?id=" + URLEncoder.encode(obj, Charsets.UTF_8);	×
145	} else {
146	return "";	×
147	}
148	}
149
150	}, new Model<String>() {	×
151
152	private static final long serialVersionUID = 1L;
153
154	@Override
155	public String getObject() {
156	String obj = getFullValue();	×
157	if (obj != null && obj.matches("https?://.+")) {	×
158	IRI objIri = vf.createIRI(obj);	×
159	if (iri.equals(NTEMPLATE.CREATOR_PLACEHOLDER)) {	×
160	if (objectPosition) {	×
161	return "me (" + User.getShortDisplayName(objIri) + ")";	×
162	} else {
163	return "I (" + User.getShortDisplayName(objIri) + ")";	×
164	}
165	} else if (isAssertionValue(objIri)) {	×
166	if (context.getType() == ContextType.ASSERTION) {	×
167	return "this assertion";	×
168	} else {
169	return "the assertion above";	×
170	}
171	} else if (isNanopubValue(objIri)) {	×
172	return "this nanopublication";	×
173	} else if (User.isUser(obj)) {	×
174	return User.getShortDisplayName(objIri);	×
175	} else if (foafNameMap.containsKey(obj)) {	×
176	return foafNameMap.get(obj);	×
177	}
178	return getLabelString(objIri);	×
179	}
180	return obj;	×
181	}
182
183	});
184	if (template.isIntroducedResource(iri) \|\| template.isEmbeddedResource(iri)) {	×
185	linkComp.add(AttributeAppender.append("class", "introduced"));	×
186	}
187	add(linkComp);	×
188	add(new Label("description", new Model<String>() {	×
189
190	private static final long serialVersionUID = 1L;
191
192	@Override
193	public String getObject() {
194	String obj = getFullValue();	×
195	if (obj != null && obj.matches("https?://.+")) {	×
196	IRI objIri = vf.createIRI(obj);	×
197	if (isAssertionValue(objIri)) {	×
198	return "This is the identifier for the assertion of this nanopublication.";	×
199	} else if (isNanopubValue(objIri)) {	×
200	return "This is the identifier for this whole nanopublication.";	×
201	} else if (context.isReadOnly() && obj.startsWith(context.getExistingNanopub().getUri().stringValue())) {	×
202	return "This is a local identifier minted within the nanopublication.";	×
203	}
204	String labelString = getLabelString(objIri);	×
205	String description = "";	×
206	if (labelString.contains(" - ")) description = labelString.replaceFirst("^.* - ", "");	×
207	return description;	×
208	} else if (obj != null && obj.startsWith("\"")) {	×
209	return "(this is a literal)";	×
210	}
211	return "";	×
212	}
213
214	}));
215	Model<String> uriModel = new Model<String>() {	×
216
217	private static final long serialVersionUID = 1L;
218
219	@Override
220	public String getObject() {
221	String obj = getFullValue();	×
222	if (obj != null && obj.startsWith("\"")) return "";	×
223	if (isAssertionValue(obj)) {	×
224	return getAssertionValue();	×
225	} else if (isNanopubValue(obj)) {	×
226	return getNanopubValue();	×
227	}
228	return obj;	×
229	}
230
231	};
232	add(Utils.getUriLink("uri", uriModel));	×
233	extraModel = Model.of("");	×
234	extraComp = new Label("extra", extraModel);	×
235	extraComp.setVisible(false);	×
236	add(extraComp);	×
237	languageModel = Model.of("");	×
238	languageComp = new Label("language", languageModel);	×
239	languageComp.setVisible(false);	×
240	add(languageComp);	×
241	datatypeModel = Model.of("");	×
242	datatypeComp = new Label("datatype", datatypeModel);	×
243	datatypeComp.setVisible(false);	×
244	add(datatypeComp);	×
245	}	×
246
247	/**
248	* {@inheritDoc}
249	*/
250	@Override
251	public void fillFinished() {
252	String obj = getFullValue();	×
253	if (obj != null) {	×
254	if (isAssertionValue(obj)) {	×
255	linkComp.add(new AttributeAppender("class", "this-assertion"));	×
256	} else if (isNanopubValue(obj)) {	×
257	linkComp.add(new AttributeAppender("class", "this-nanopub"));	×
258	} else if (context.getExistingNanopub() != null) {	×
259	Nanopub np = context.getExistingNanopub();	×
260	if (Utils.getIntroducedIriIds(np).contains(obj) \|\| Utils.getEmbeddedIriIds(np).contains(obj)) {	×
261	linkComp.add(AttributeAppender.append("class", "introduced"));	×
262	}
263	}
264	}
265	}	×
266
267	/**
268	* {@inheritDoc}
269	*/
270	@Override
271	public void finalizeValues() {
272	}	×
273
274	private String getLabelString(IRI iri) {
275	if (template.getLabel(iri) != null) {	×
276	return template.getLabel(iri).replaceFirst(" - .*$", "");	×
277	} else if (context.getLabel(iri) != null) {	×
278	return context.getLabel(iri).replaceFirst(" - .*$", "");	×
279	} else {
280	return IriItem.getShortNameFromURI(iri.stringValue());	×
281	}
282	}
283
284	/**
285	* {@inheritDoc}
286	*/
287	@Override
288	public void removeFromContext() {
289	// Nothing to be done here.
290	}	×
291
292	private String getFullValue() {
293	String s = model.getObject();	×
294	if (s == null) return null;	×
295	if (template.isAutoEscapePlaceholder(iri)) {	×
296	s = Utils.urlEncode(s);	×
297	}
298	if (!prefix.isEmpty()) {	×
299	s = prefix + s;	×
300	}
301	return s;	×
302	}
303
304	private boolean isNanopubValue(Object obj) {
305	if (obj == null) return false;	×
306	if (obj.toString().equals("local:nanopub")) return true;	×
307	if (context.getExistingNanopub() == null) return false;	×
308	return obj.toString().equals(context.getExistingNanopub().getUri().stringValue());	×
309	}
310
311	private String getNanopubValue() {
312	if (context.getExistingNanopub() != null) {	×
313	return context.getExistingNanopub().getUri().stringValue();	×
314	} else {
315	return "local:nanopub";	×
316	}
317	}
318
319	private boolean isAssertionValue(Object obj) {
320	if (obj == null) return false;	×
321	if (obj.toString().equals("local:assertion")) return true;	×
322	if (context.getExistingNanopub() == null) return false;	×
323	return obj.toString().equals(context.getExistingNanopub().getAssertionUri().stringValue());	×
324	}
325
326	private String getAssertionValue() {
327	if (context.getExistingNanopub() != null) {	×
328	return context.getExistingNanopub().getAssertionUri().stringValue();	×
329	} else {
330	return "local:assertion";	×
331	}
332	}
333
334	/**
335	* {@inheritDoc}
336	*/
337	@Override
338	public boolean isUnifiableWith(Value v) {
339	if (v == null) return true;	×
340	if (v instanceof IRI) {	×
341	String vs = v.stringValue();	×
342	if (vs.equals("local:nanopub")) {	×
343	vs = getNanopubValue();	×
344	} else if (vs.equals("local:assertion")) {	×
345	vs = getAssertionValue();	×
346	}
347	if (vs.startsWith(prefix)) vs = vs.substring(prefix.length());	×
348	// if (vs.startsWith("local:")) vs = vs.replaceFirst("^local:", "");
349	if (template.isAutoEscapePlaceholder(iri)) {	×
350	vs = Utils.urlDecode(vs);	×
351	}
352	Validatable<String> validatable = new Validatable<>(vs);	×
353	// if (template.isLocalResource(iri) && !Utils.isUriPostfix(vs)) {
354	// vs = Utils.getUriPostfix(vs);
355	// }
356	new Validator().validate(validatable);	×
357	if (!validatable.isValid()) {	×
358	return false;	×
359	}
360	if (model.getObject().isEmpty()) {	×
361	return true;	×
362	}
363	return vs.equals(model.getObject());	×
364	} else if (v instanceof Literal vL) {	×
365	if (template.getRegex(iri) != null && !v.stringValue().matches(template.getRegex(iri))) {	×
366	return false;	×
367	}
368	String languagetag = template.getLanguageTag(iri);	×
369	IRI datatype = template.getDatatype(iri);	×
370	if (languagetag != null) {	×
371	if (!vL.getLanguage().isPresent() \|\| !Literals.normalizeLanguageTag(vL.getLanguage().get()).equals(languagetag)) {	×
372	return false;	×
373	}
374	} else if (datatype != null) {	×
375	if (!vL.getDatatype().equals(datatype)) {	×
376	return false;	×
377	}
378	}
379	if (linkComp.getDefaultModelObject() == null \|\| linkComp.getDefaultModelObject().toString().isEmpty()) {	×
380	return true;	×
381	}
382	return linkComp.getDefaultModelObject().equals("\"" + v.stringValue() + "\"");	×
383	}
384	return false;	×
385	}
386
387	/**
388	* {@inheritDoc}
389	*/
390	@Override
391	public void unifyWith(Value v) throws UnificationException {
392	if (v == null) return;	×
393	String vs = v.stringValue();	×
394	if (!isUnifiableWith(v)) throw new UnificationException(vs);	×
395	if (v instanceof IRI) {	×
396	if (vs.equals("local:nanopub")) {	×
397	vs = getNanopubValue();	×
398	} else if (vs.equals("local:assertion")) {	×
399	vs = getAssertionValue();	×
400	}
401	if (!prefix.isEmpty() && vs.startsWith(prefix)) {	×
402	vs = vs.substring(prefix.length());	×
403	// With read-only items, we don't need preliminary local identifiers:
404	// } else if (vs.startsWith("local:")) {
405	// vs = vs.replaceFirst("^local:", "");
406	// } else if (template.isLocalResource(iri) && !Utils.isUriPostfix(vs)) {
407	// vs = Utils.getUriPostfix(vs);
408	}
409	if (template.isAutoEscapePlaceholder(iri)) {	×
410	vs = Utils.urlDecode(vs);	×
411	}
412	model.setObject(vs);	×
413	} else if (v instanceof Literal vL) {	×
414	if (vL.getLanguage().isPresent()) {	×
415	model.setObject("\"" + vs + "\"");	×
416	languageModel.setObject("(" + Literals.normalizeLanguageTag(vL.getLanguage().get()) + ")");	×
417	languageComp.setVisible(true);	×
418	} else if (!vL.getDatatype().equals(XSD.STRING)) {	×
419	model.setObject("\"" + vs + "\"");	×
420	datatypeModel.setObject("(" + vL.getDatatype().stringValue().replace(XSD.NAMESPACE, "xsd:") + ")");	×
421	datatypeComp.setVisible(true);	×
422	} else {
423	model.setObject("\"" + vs + "\"");	×
424	}
425	// TODO Didn't manage to encode this into a working regex:
426	if (vs.startsWith("<p>") \|\| vs.startsWith("<p ") \|\| vs.startsWith("<div>") \|\| vs.startsWith("<div ") \|\| vs.startsWith("<span>") \|\| vs.startsWith("<span ") \|\| vs.startsWith("<img ")) {	×
427	linkComp.setVisible(false);	×
428	extraModel.setObject("<span class=\"internal\">" + Utils.sanitizeHtml(vs) + "</span>");	×
429	extraComp.setEscapeModelStrings(false);	×
430	extraComp.setVisible(true);	×
431	}
432	}
433	}	×
434
435
436	protected class Validator extends InvalidityHighlighting implements IValidator<String> {
437
438	private static final long serialVersionUID = 1L;
439
440	/**
441	* Default constructor for Validator.
442	*/
443	public Validator() {	×
444	}	×
445
446	@Override
447	public void validate(IValidatable<String> s) {
448	String sv = s.getValue();	×
449	String p = prefix;	×
450	if (template.isAutoEscapePlaceholder(iri)) {	×
451	sv = Utils.urlEncode(sv);	×
452	}
453	if (sv.matches("https?://.+")) {	×
454	p = "";	×
455	} else if (sv.contains(":")) {	×
456	s.error(new ValidationError("Colon character is not allowed in postfix"));	×
457	}
458	String iriString = p + sv;	×
459	if (iriString.matches("[^:# ]+")) {	×
460	p = "local:";	×
461	iriString = p + sv;	×
462	}
463	try {
464	ParsedIRI piri = new ParsedIRI(iriString);	×
465	if (!piri.isAbsolute()) {	×
466	s.error(new ValidationError("IRI not well-formed"));	×
467	}
468	if (p.isEmpty() && !sv.startsWith("local:") && !sv.matches("https?://.+")) {	×
469	s.error(new ValidationError("Only http(s):// IRIs are allowed here"));	×
470	}
471	} catch (URISyntaxException ex) {	×
472	s.error(new ValidationError("IRI not well-formed"));	×
473	}	×
474	String regex = template.getRegex(iri);	×
475	if (regex != null) {	×
476	if (!sv.matches(regex)) {	×
477	s.error(new ValidationError("Value '" + sv + "' doesn't match the pattern '" + regex + "'"));	×
478	}
479	}
480	if (template.isRestrictedChoicePlaceholder(iri)) {	×
481	if (!restrictedChoice.getPossibleValues().contains(iriString) && !restrictedChoice.hasPossibleRefValues()) {	×
482	// not checking the possible ref values can overgenerate, but normally works
483	s.error(new ValidationError("Invalid choice"));	×
484	}
485	}
486	if (template.isExternalUriPlaceholder(iri)) {	×
487	if (!iriString.matches("https?://.+")) {	×
488	s.error(new ValidationError("Not an external IRI"));	×
489	}
490	}
491	if (template.isTrustyUriPlaceholder(iri)) {	×
492	if (!TrustyUriUtils.isPotentialTrustyUri(iriString)) {	×
493	s.error(new ValidationError("Not a trusty URI"));	×
494	}
495	}
496	if (iri.equals(NTEMPLATE.CREATOR_PLACEHOLDER) && context.getExistingNanopub() != null) {	×
497	boolean found = false;	×
498	for (IRI creator : SimpleCreatorPattern.getCreators(context.getExistingNanopub())) {	×
499	if (creator.stringValue().equals(iriString)) {	×
500	found = true;	×
501	break;	×
502	}
503	}	×
504	if (!found) {	×
505	s.error(new ValidationError("Not a creator of nanopub"));	×
506	}
507	}
508	}	×
509
510	}
511
512	/**
513	* <p>toString.</p>
514	*
515	* @return a {@link java.lang.String} object
516	*/
517	public String toString() {
518	return "[read-only IRI item: " + iri + "]";	×
519	}
520
521	static final ValueFactory vf = SimpleValueFactory.getInstance();	×
522
523	}

knowledgepixels / nanodash / 17302137193

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