IGVF-DACC / checkfiles / 110b6182-4dd7-4ec6-b84c-6c9b00c14b44

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110b6182-4dd7-4ec6-b84c-6c9b00c14b44

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circleci

mingjiecn 
add schema and update function for checking content type barcode to sample mapping

24 of 25 new or added lines in 3 files covered. (96.0%)

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87.5
/src/checkfiles/barcode_to_sample_mapping_check.py
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from frictionless import Check, errors
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class BarcodeToSampleMappingCheck(Check):




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    Errors = [errors.RowConstraintError]




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    def validate_row(self, row):




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        # for row position, parse barcode type and well, if any of them is not empty, then the other two must not be empty











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        if (row['position'] and row['parse barcode type'] and row['well']) or (not row['position'] and not row['parse barcode type'] and not row['well']):




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            pass




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        else:











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            note = 'position, parse barcode type and well must be all empty or all not empty'




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            yield errors.RowConstraintError.from_row(row, note=note)




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