17101643433

Committed 20 Aug 2025 02:36PM UTC coverage: 77.484% (+77.5%) from 0.0%

Build # 17101643433

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Committed by

kunzaatko

Commit Message

fix(tests): Correct the error types thrown and fix the unbound args

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60.0

/src/psf/point-spread-function.jl

using InterfaceFunctions

"""
    PointSpreadFunction{N} <: LinearShiftInvariantTransferFunction{N}
A point spread function is a description of a transfer functions specifying the intensity transfer of a single point
source in the object plane into a region of the image plane.

# Implementation
To create a new Point spread function (PSF) `A <: PointSpreadFunction`, you must define the __intensity__ at a given
[length](@extref Unitful `Length`) coordinate `intensity(psf::A, x::Length, y::Length)`.
"""
abstract type PointSpreadFunction{N} <: LinearShiftInvariantTransferFunction{N} end
Broadcast.broadcastable(tf::PointSpreadFunction) = Ref(tf)

"""
    PointSpreadFunctionSymmetry
A marker type that indicates the symmetries of a `PointSpreadFunction` which may lead to optimized methods.

Subtypes thus far include [`ZAxisRadialSymmetry`](@ref) and [`NoSymmetry`](@ref).
"""
abstract type PointSpreadFunctionSymmetry end
Broadcast.broadcastable(s::PointSpreadFunctionSymmetry) = Ref(s)

"""
    ZAxisRadialSymmetry <: PointSpreadFunctionSymmetry
``z`` axis radial symmetry of a `PointSpreadFunction` indicates that the PSF is symmetric in the radially around the
z-axis.
"""
struct ZAxisRadialSymmetry <: PointSpreadFunctionSymmetry end

"""
    NoSymmetry <: PointSpreadFunctionSymmetry
`NoSymmetry` marks a `PointSpreadFunction` that is not symmetric in any way. You need to compute every ``x``, ``y``,
``z`` coordinate separately. 
"""
struct NoSymmetry <: PointSpreadFunctionSymmetry end

"""
    symmtery(psf::PointSpreadFunction)
Marks the symmetries of a `PointSpreadFunction`.
"""
@interface symmetry(::PointSpreadFunction) = NoSymmetry()

"""
    intensity(psf::PointSpreadFunction, x::Length, y::Length)
The intensity of a `PSF` at a given location.
"""
@interface response(psf::PointSpreadFunction, args...) = response(symmetry(psf), psf, args...)
@inline response(::ZAxisRadialSymmetry, psf::PointSpreadFunction, x::Length, y::Length) = intensity(psf, hypot(x, y))
@inline response(::ZAxisRadialSymmetry, psf::PointSpreadFunction{3}, x::Length, y::Length, z::Length) = intensity(psf, hypot(x, y), z)
@inline response(::NoSymmetry, psf::PointSpreadFunction, x::Length, y::Length) = intensity(psf, x, y)
@inline response(::NoSymmetry, psf::PointSpreadFunction{3}, x::Length, y::Length, z::Length) = intensity(psf, x, y, z)

"""
    PSFModel <: PointSpreadFunction 
`PointSpreadFunction` subtype for PSF models. A `PSF` model is a `PointSpreadFunction` that has parameters accessible
through [`params`](@ref) and can be fitted to data.
"""
abstract type PSFModel{N} <: PointSpreadFunction{N} end

include("methods.jl")

# Augmentations
include("./rotated-psf.jl")
include("./scaled-psf.jl")

include("./psf-array.jl")

# Models
include("./models/airy-disc.jl")
include("./models/gaussian.jl")

include("./models/gibson-lanni.jl")
include("./models/born-wolf.jl")


include("./estimation.jl")

export response, psf
export BornWolf, GibsonLanni, PSFArray

1	using InterfaceFunctions
2
3	"""
4	PointSpreadFunction{N} <: LinearShiftInvariantTransferFunction{N}
5	A point spread function is a description of a transfer functions specifying the intensity transfer of a single point
6	source in the object plane into a region of the image plane.
7
8	# Implementation
9	To create a new Point spread function (PSF) `A <: PointSpreadFunction`, you must define the __intensity__ at a given
10	[length](@extref Unitful `Length`) coordinate `intensity(psf::A, x::Length, y::Length)`.
11	"""
12	abstract type PointSpreadFunction{N} <: LinearShiftInvariantTransferFunction{N} end
13	Broadcast.broadcastable(tf::PointSpreadFunction) = Ref(tf)	20✔
14
15	"""
16	PointSpreadFunctionSymmetry
17	A marker type that indicates the symmetries of a `PointSpreadFunction` which may lead to optimized methods.
18
19	Subtypes thus far include [`ZAxisRadialSymmetry`](@ref) and [`NoSymmetry`](@ref).
20	"""
21	abstract type PointSpreadFunctionSymmetry end
22	Broadcast.broadcastable(s::PointSpreadFunctionSymmetry) = Ref(s)	×
23
24	"""
25	ZAxisRadialSymmetry <: PointSpreadFunctionSymmetry
26	``z`` axis radial symmetry of a `PointSpreadFunction` indicates that the PSF is symmetric in the radially around the
27	z-axis.
28	"""
29	struct ZAxisRadialSymmetry <: PointSpreadFunctionSymmetry end	89,354✔
30
31	"""
32	NoSymmetry <: PointSpreadFunctionSymmetry
33	`NoSymmetry` marks a `PointSpreadFunction` that is not symmetric in any way. You need to compute every ``x``, ``y``,
34	``z`` coordinate separately.
35	"""
36	struct NoSymmetry <: PointSpreadFunctionSymmetry end	2✔
37
38	"""
39	symmtery(psf::PointSpreadFunction)
40	Marks the symmetries of a `PointSpreadFunction`.
41	"""
42	@interface symmetry(::PointSpreadFunction) = NoSymmetry()	×
43
44	"""
45	intensity(psf::PointSpreadFunction, x::Length, y::Length)
46	The intensity of a `PSF` at a given location.
47	"""
48	@interface response(psf::PointSpreadFunction, args...) = response(symmetry(psf), psf, args...)	×
49	@inline response(::ZAxisRadialSymmetry, psf::PointSpreadFunction, x::Length, y::Length) = intensity(psf, hypot(x, y))	1,470✔
NEW 50	@inline response(::ZAxisRadialSymmetry, psf::PointSpreadFunction{3}, x::Length, y::Length, z::Length) = intensity(psf, hypot(x, y), z)	87,880✔
51	@inline response(::NoSymmetry, psf::PointSpreadFunction, x::Length, y::Length) = intensity(psf, x, y)	2✔
NEW 52	@inline response(::NoSymmetry, psf::PointSpreadFunction{3}, x::Length, y::Length, z::Length) = intensity(psf, x, y, z)	×
53
54	"""
55	PSFModel <: PointSpreadFunction
56	`PointSpreadFunction` subtype for PSF models. A `PSF` model is a `PointSpreadFunction` that has parameters accessible
57	through [`params`](@ref) and can be fitted to data.
58	"""
59	abstract type PSFModel{N} <: PointSpreadFunction{N} end
60
61	include("methods.jl")
62
63	# Augmentations
64	include("./rotated-psf.jl")
65	include("./scaled-psf.jl")
66
67	include("./psf-array.jl")
68
69	# Models
70	include("./models/airy-disc.jl")
71	include("./models/gaussian.jl")
72
73	include("./models/gibson-lanni.jl")
74	include("./models/born-wolf.jl")
75
76
77	include("./estimation.jl")
78
79	export response, psf
80	export BornWolf, GibsonLanni, PSFArray

kunzaatko / TransferFunctions.jl / 17101643433

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