16730063425

Committed 04 Aug 2025 05:35PM UTC coverage: 86.311%. Remained the same

Build # 16730063425

Build Type

push

github

Committed by

web-flow

Commit Message

Merge pull request #73 from kit-data-manager/fix_issue_61

expected_input_format now always returns proper mimetype string

Run Details

2 of 4 new or added lines in 3 files covered. (50.0%)

2396 of 2776 relevant lines covered (86.31%)

0.86 hits per line

Source File
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52.94

/src/parser/MetadataParser.py

from abc import ABC, abstractmethod
from typing import List
from io import StringIO

import xmltodict
import json
import logging

import configparser
#from configparser import ConfigParser, NoInterpolation

class MetadataParser(ABC):

    @staticmethod
    @abstractmethod
    def expected_input_format() -> str:
        pass

    @staticmethod
    @abstractmethod
    def supported_input_sources() -> List[str]:
        """
        Provides informative output about the input sources that are supported by implementation of this parser.
        The output is not specified and should only be used for informative reasons (such as logging and printing)
        :return:
        """
        pass

    def _read_input(self, payload):
        """
        creates metadata dictionary from payload
        :param payload: input String
        :return: metadata dict
        """
        if self.expected_input_format() == "text/xml":
            self.parsed_data = xmltodict.parse(payload)
            return self.parsed_data
        if self.expected_input_format() == "application/json":
            self.parsed_data = json.loads(payload)
            return self.parsed_data
        if self.expected_input_format() == "text/plain":
            self.parsed_data = {}
            config = configparser.ConfigParser(interpolation=configparser.Interpolation()) # disables interpolation explicitly
            config.optionxform = str # do this if you do not want to read in data as lowercase
            config.read_string(payload)
            for section in config.sections():
                items = config.items(section)
                self.parsed_data[section] = dict(items)
            return self.parsed_data
        logging.error("Parsing of input format not implemented: {}",format(self.expected_input_format()))
        return None

1	from abc import ABC, abstractmethod	1✔
2	from typing import List	1✔
3	from io import StringIO	1✔
4
5	import xmltodict	1✔
6	import json	1✔
7	import logging	1✔
8
9	import configparser	1✔
10	#from configparser import ConfigParser, NoInterpolation
11
12	class MetadataParser(ABC):	1✔
13
14	@staticmethod	1✔
15	@abstractmethod	1✔
16	def expected_input_format() -> str:	1✔
17	pass	×
18
19	@staticmethod	1✔
20	@abstractmethod	1✔
21	def supported_input_sources() -> List[str]:	1✔
22	"""
23	Provides informative output about the input sources that are supported by implementation of this parser.
24	The output is not specified and should only be used for informative reasons (such as logging and printing)
25	:return:
26	"""
27	pass	×
28
29	def _read_input(self, payload):	1✔
30	"""
31	creates metadata dictionary from payload
32	:param payload: input String
33	:return: metadata dict
34	"""
35	if self.expected_input_format() == "text/xml":	1✔
36	self.parsed_data = xmltodict.parse(payload)	1✔
37	return self.parsed_data	1✔
NEW 38	if self.expected_input_format() == "application/json":	×
39	self.parsed_data = json.loads(payload)	×
40	return self.parsed_data	×
41	if self.expected_input_format() == "text/plain":	×
42	self.parsed_data = {}	×
43	config = configparser.ConfigParser(interpolation=configparser.Interpolation()) # disables interpolation explicitly	×
44	config.optionxform = str # do this if you do not want to read in data as lowercase	×
45	config.read_string(payload)	×
46	for section in config.sections():	×
47	items = config.items(section)	×
48	self.parsed_data[section] = dict(items)	×
49	return self.parsed_data	×
50	logging.error("Parsing of input format not implemented: {}",format(self.expected_input_format()))	×
51	return None	×

kit-data-manager / tomo_mapper / 16730063425

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