kit-data-manager / tomo_mapper / 16725814017

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Release v1.1.0

350 of 449 new or added lines in 22 files covered. (77.95%)

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93.75
/tests/parser_tests/test_txtparser.py
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import glob
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import os
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from pprint import pprint
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import pytest




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from src.config import MappingConfig




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from src.parser.ImageParser import ParserMode




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from src.parser.impl.TxtParser import TxtParser




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from src.resources.maps.mapping import textparser_sem_tescan, textparser_sem_jeol




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from src.util import load_json, input_to_dict




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class TestTXTparser:




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    def test_sem_tescan(self):




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        parser = TxtParser(ParserMode.SEM)




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        MappingConfig.set_working_dir("/")




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        dir_to_testscript = os.path.split(__file__)[0]




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        tesc_glob = glob.glob(os.path.normpath(os.path.join(dir_to_testscript, "../sampleData/images/SEM/TESCAN/*.hdr")))




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        if len(tesc_glob) == 0:




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            pytest.skip("Test files not included, skipping test")




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        mapping_dict = input_to_dict(textparser_sem_tescan.read_text())




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        for zg in tesc_glob:




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            img, raw = parser.parse(zg, mapping_dict)




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            #pprint(raw)










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            pprint(img.image_metadata.to_schema_dict())




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    def test_sem_jeol(self):




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        parser = TxtParser(ParserMode.SEM)




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        MappingConfig.set_working_dir("/")




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        dir_to_testscript = os.path.split(__file__)[0]




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        tesc_glob = glob.glob(os.path.normpath(os.path.join(dir_to_testscript, "../sampleData/images/SEM/JEOL/*.txt")))




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        if len(tesc_glob) == 0:




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            pytest.skip("Test files not included, skipping test")




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        mapping_dict = input_to_dict(textparser_sem_jeol.read_text())




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        for zg in tesc_glob:




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            img, raw = parser.parse(zg, mapping_dict)




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            #pprint(raw)










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            pprint(img.image_metadata.to_schema_dict())



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