16725814017

Committed 04 Aug 2025 02:09PM UTC coverage: 86.311% (-3.3%) from 89.629%

Build # 16725814017

Build Type

push

github

Committed by

web-flow

Commit Message

Release v1.1.0

Run Details

350 of 449 new or added lines in 22 files covered. (77.95%)

9 existing lines in 2 files now uncovered.

2396 of 2776 relevant lines covered (86.31%)

0.86 hits per line

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47.83

/src/parser/impl/Dataset_infoParser.py

1	from typing import List	1✔
2
3	from src.model.SchemaConcepts.Acquisition_simplified import Acquisition	1✔
4	from src.model.SchemaConcepts.Dataset_simplified import Dataset	1✔
5	from src.model.SetupMD import SetupMD	1✔
6	from src.parser.SetupMD_Parser import SetupMD_Parser	1✔
7	from src.parser.mapping_util import map_a_dict	1✔
8	from src.resources.maps.mapping import setup_tescan	1✔
9	from src.util import input_to_dict	1✔
10	from src.Preprocessor import Preprocessor	1✔
11
12
13	class Dataset_infoParser(SetupMD_Parser):	1✔
14
15	@staticmethod	1✔
16	def supported_input_sources() -> List[str]:	1✔
NEW 17	return ['Tescan Solaris']	×
18
19	def __init__(self):	1✔
20	self.internal_mapping = input_to_dict(setup_tescan.read_text())	1✔
21
22	def parse_setup(self, payload) -> tuple[SetupMD, dict]:	1✔
NEW 23	parsed = self._read_input(payload)	×
24	#print("..............",parsed)
NEW 25	mapping_dict = self.internal_mapping	×
NEW 26	ac_md = map_a_dict(parsed, mapping_dict)	×
27
NEW 28	Preprocessor.normalize_all_units(ac_md)	×
29
NEW 30	acquisition = self._create_acquisition(ac_md)	×
NEW 31	datasets = self._create_datasets(ac_md)	×
NEW 32	if not datasets:	×
NEW 33	return acquisition, parsed	×
34
NEW 35	if len(datasets) == 1:	×
NEW 36	acquisition.dataset_template = datasets[0]	×
37	else:
NEW 38	acquisition.datasets = datasets	×
NEW 39	return SetupMD(acquisition_metadata=acquisition), parsed	×
40
41	def _create_acquisition(self, ac_md) -> Acquisition:	1✔
42
NEW 43	ac_md_format = {	×
44	"genericMetadata": ac_md["genericMetadata"]
45	}
46
NEW 47	acquisition = Acquisition(**ac_md_format)	×
48	#datasets = self._create_datasets(metadata_dict)
49	#acquisition.datasets = datasets
NEW 50	return acquisition	×
51
52	def _create_datasets(self, ac_md) -> list:	1✔
NEW 53	datasets = []	×
NEW 54	for ds in ac_md["dataset"]:	×
NEW 55	datasets.append(self._create_dataset(ds))	×
NEW 56	return datasets	×
57
58	def _create_dataset(self, ds_dict) -> Dataset:	1✔
NEW 59	ds = Dataset(**ds_dict)	×
NEW 60	return ds	×
61
62
63	@staticmethod	1✔
64	def retrievable_datasets():	1✔
NEW 65	return True	×
66
67	@staticmethod	1✔
68	def expected_input_format():	1✔
NEW 69	return "text/plain"	×

kit-data-manager / tomo_mapper / 16725814017

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